BP918369
Clone id YMU001_000112_F11
Library
Length 584
Definition Adiantum capillus-veneris mRNA. clone: YMU001_000112_F11.
Accession
Tissue type prothallium
Developmental stage -
Contig ID
Sequence
CCCCGAGTTTATCTCAAAAAGAATAGAGCAATTACAAAGGACCTCTTCAGTTGTGCAAAA
AACTTCCTGAAGTTCCAACTCTTAGCATACAGAGTACCCCACAAACCTATTCAATTGCCT
CATGTCCTTCGGTGAGAACTTTTCACCTCATGAATCATAAGAAAATAACAGGGTTGAGGT
AGGAATAGCCAGACATTCATAAACCCACCTATGCGCTGACCCTGTTATCTAAAGCTGAAG
TGCAGAATTCATATCAAAGAGGAAACTCATTTTCCTGCCTCTGCACGCTTTTTGAAAGAA
AGCAAAACTCCATTCTGGCATACCATGGAATCTTACCAAGATGCCCCTATTCTATTGGCA
CCCAACGCCTATACATTGACTCATCATGTGCATAGTGTCAAAACCTTATGTCATCTTGTT
TTGAATCTGCCGGTGAACGTGGACAAGGTACTCCACATACGAAAGACCCAAAGCATTCTT
GTCCTCCACAAGAAGTGAAAAGAAAAGAAACTCCAACGGATCTCCTCTTCGGCACCAGTG
GAATCGCAAGTAAGAGCATCGTTCTTTTCGAATCTCATTGACCA
■■Homology search results ■■ -
sp_hit_id Q9M291
Definition sp|Q9M291|SC24C_ARATH Protein transport protein Sec24-like CEF OS=Arabidopsis thaliana
Align length 58
Score (bit) 68.2
E-value 3.0e-11
Report
BLASTX 2.2.19 [Nov-02-2008]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.

Query= BP918369|Adiantum capillus-veneris mRNA, clone:
YMU001_000112_F11.
(584 letters)

Database: uniprot_sprot.fasta
412,525 sequences; 148,809,765 total letters

Searching..................................................done



Score E
Sequences producing significant alignments: (bits) Value

sp|Q9M291|SC24C_ARATH Protein transport protein Sec24-like CEF O... 68 3e-11
sp|P53992|SC24C_HUMAN Protein transport protein Sec24C OS=Homo s... 45 3e-04
sp|A6QNT8|SC24A_BOVIN Protein transport protein Sec24A OS=Bos ta... 36 0.12
sp|O95486|SC24A_HUMAN Protein transport protein Sec24A OS=Homo s... 34 0.47
sp|O95487|SC24B_HUMAN Protein transport protein Sec24B OS=Homo s... 34 0.61
sp|Q3U2P1|SC24A_MOUSE Protein transport protein Sec24A OS=Mus mu... 33 0.80
sp|A0KSR5|MUTL_SHESA DNA mismatch repair protein mutL OS=Shewane... 33 1.0
sp|Q07XW5|MUTL_SHEFN DNA mismatch repair protein mutL OS=Shewane... 32 2.3
sp|P34756|FAB1_YEAST 1-phosphatidylinositol-3-phosphate 5-kinase... 32 3.0
sp|Q32DE2|DNLJ_SHIDS DNA ligase OS=Shigella dysenteriae serotype... 31 3.9
sp|Q0HR40|MUTL_SHESR DNA mismatch repair protein mutL OS=Shewane... 31 5.2
sp|Q0HMP1|MUTL_SHESM DNA mismatch repair protein mutL OS=Shewane... 31 5.2
sp|Q8EJ70|MUTL_SHEON DNA mismatch repair protein mutL OS=Shewane... 31 5.2
sp|A6WSV4|MUTL_SHEB8 DNA mismatch repair protein mutL OS=Shewane... 31 5.2
sp|Q9EQW7|KI13A_MOUSE Kinesin-like protein KIF13A OS=Mus musculu... 30 6.7
sp|A3D022|MUTL_SHEB5 DNA mismatch repair protein mutL OS=Shewane... 30 8.8
sp|Q9H1H9|KI13A_HUMAN Kinesin-like protein KIF13A OS=Homo sapien... 30 8.8

>sp|Q9M291|SC24C_ARATH Protein transport protein Sec24-like CEF
OS=Arabidopsis thaliana GN=CEF PE=1 SV=2
Length = 1097

Score = 68.2 bits (165), Expect = 3e-11
Identities = 33/58 (56%), Positives = 44/58 (75%), Gaps = 1/58 (1%)
Frame = -3

Query: 582 VNEIRKERCSYLRFHWCRRGDPL-EFLFFSLLVEDKNALGLSYVEYLVHVHRQIQNKM 412
VNEIR++R SYLR C++GDP LF S +VED+ + G SYV++LV VHRQIQ+K+
Sbjct: 1039 VNEIRRQRSSYLRIKLCKKGDPAGNMLFQSYMVEDRGSGGASYVDFLVSVHRQIQHKL 1096


>sp|P53992|SC24C_HUMAN Protein transport protein Sec24C OS=Homo
sapiens GN=SEC24C PE=1 SV=2
Length = 1094

Score = 44.7 bits (104), Expect = 3e-04
Identities = 20/59 (33%), Positives = 39/59 (66%), Gaps = 1/59 (1%)
Frame = -3

Query: 582 VNEIRKERCSYLRFHWCRRGDPLEFLFFSLLVEDKN-ALGLSYVEYLVHVHRQIQNKMT 409
++ +R +R Y++ ++ D +E LF LVEDK+ + G SYV++L H+H++I+ ++
Sbjct: 1036 IDSLRAQRSRYMKLTVVKQEDKMEMLFKHFLVEDKSLSGGASYVDFLCHMHKEIRQLLS 1094


>sp|A6QNT8|SC24A_BOVIN Protein transport protein Sec24A OS=Bos taurus
GN=SEC24A PE=2 SV=1
Length = 1099

Score = 36.2 bits (82), Expect = 0.12
Identities = 16/53 (30%), Positives = 31/53 (58%)
Frame = -3

Query: 582 VNEIRKERCSYLRFHWCRRGDPLEFLFFSLLVEDKNALGLSYVEYLVHVHRQI 424
++ +R++R Y + R P++ F +VED+ LSY E+L+H+ +Q+
Sbjct: 1045 ISWLREQRPFYPILYVIRDESPMKANFLQNMVEDRTESALSYYEFLLHIQQQV 1097


>sp|O95486|SC24A_HUMAN Protein transport protein Sec24A OS=Homo
sapiens GN=SEC24A PE=1 SV=2
Length = 1093

Score = 34.3 bits (77), Expect = 0.47
Identities = 14/53 (26%), Positives = 31/53 (58%)
Frame = -3

Query: 582 VNEIRKERCSYLRFHWCRRGDPLEFLFFSLLVEDKNALGLSYVEYLVHVHRQI 424
++ +R++R + + R P++ F ++ED+ LSY E+L+H+ +Q+
Sbjct: 1039 ISWLREQRPFFPILYVIRDESPMKANFLQNMIEDRTESALSYYEFLLHIQQQV 1091


>sp|O95487|SC24B_HUMAN Protein transport protein Sec24B OS=Homo
sapiens GN=SEC24B PE=1 SV=2
Length = 1268

Score = 33.9 bits (76), Expect = 0.61
Identities = 15/39 (38%), Positives = 22/39 (56%)
Frame = -3

Query: 540 HWCRRGDPLEFLFFSLLVEDKNALGLSYVEYLVHVHRQI 424
H + P + FF L+ED+ SY E+L+HV +QI
Sbjct: 1228 HIVKDESPAKAEFFQHLIEDRTEAAFSYYEFLLHVQQQI 1266


>sp|Q3U2P1|SC24A_MOUSE Protein transport protein Sec24A OS=Mus
musculus GN=Sec24a PE=1 SV=1
Length = 1090

Score = 33.5 bits (75), Expect = 0.80
Identities = 15/53 (28%), Positives = 30/53 (56%)
Frame = -3

Query: 582 VNEIRKERCSYLRFHWCRRGDPLEFLFFSLLVEDKNALGLSYVEYLVHVHRQI 424
++ +R++R + + R ++ F LVED+ LSY E+L+H+ +Q+
Sbjct: 1036 ISWLREQRPFFPVLYVIREESLMKAAFLQSLVEDRTESALSYYEFLLHIQQQV 1088


>sp|A0KSR5|MUTL_SHESA DNA mismatch repair protein mutL OS=Shewanella
sp. (strain ANA-3) GN=mutL PE=3 SV=1
Length = 648

Score = 33.1 bits (74), Expect = 1.0
Identities = 20/66 (30%), Positives = 31/66 (46%)
Frame = +1

Query: 274 PASARFLKESKTPFWHTMESYQDAPILLAPNAYTLTHHVHSVKTLCHLVLNLPVNVDKVL 453
PA RFLK KT F H E + ++ +TLTH+ V+ C +N P + ++
Sbjct: 155 PARRRFLKSDKTEFTHIDEWLKRIALVRGDIHFTLTHNGKIVRN-CRPAMNEPQYLQRLT 213

Query: 454 HIRKTQ 471
+ Q
Sbjct: 214 QVAGRQ 219


>sp|Q07XW5|MUTL_SHEFN DNA mismatch repair protein mutL OS=Shewanella
frigidimarina (strain NCIMB 400) GN=mutL PE=3 SV=1
Length = 619

Score = 32.0 bits (71), Expect = 2.3
Identities = 17/43 (39%), Positives = 23/43 (53%)
Frame = +1

Query: 274 PASARFLKESKTPFWHTMESYQDAPILLAPNAYTLTHHVHSVK 402
PA RFLK KT F H E + I+ + +TLTH+ V+
Sbjct: 155 PARRRFLKSDKTEFTHIDEWLKRIAIVRSDIHFTLTHNAKLVR 197


>sp|P34756|FAB1_YEAST 1-phosphatidylinositol-3-phosphate 5-kinase FAB1
OS=Saccharomyces cerevisiae GN=FAB1 PE=1 SV=1
Length = 2278

Score = 31.6 bits (70), Expect = 3.0
Identities = 23/78 (29%), Positives = 32/78 (41%)
Frame = +3

Query: 66 PEVPTLSIQSTPQTYSIASCPSVRTFHLMNHKKITGLR*E*PDIHKPTYALTLLSKAEVQ 245
P ++S TPQT T M H K T P+I K + +L A +
Sbjct: 1584 PSASSVSSSLTPQTEERPPISRSGTGISMTHDKSTR-----PNIRKMSSDSSLCGLASLA 1638

Query: 246 NSYQRGNSFSCLCTLFER 299
N Y + N S L T F++
Sbjct: 1639 NEYSKNNKVSKLATFFDQ 1656


>sp|Q32DE2|DNLJ_SHIDS DNA ligase OS=Shigella dysenteriae serotype 1
(strain Sd197) GN=ligA PE=3 SV=1
Length = 671

Score = 31.2 bits (69), Expect = 3.9
Identities = 27/92 (29%), Positives = 44/92 (47%)
Frame = -3

Query: 525 GDPLEFLFFSLLVEDKNALGLSYVEYLVHVHRQIQNKMT*GFDTMHMMSQCIGVGCQ*NR 346
G L+F + L V D+ L S E LV H+ +++ T GFD ++ + + Q
Sbjct: 241 GRLLQFKKWGLPVSDRVTLCESAEEVLVFYHKVEEDRPTLGFDIDGVVIKVNSLAQQEQL 300

Query: 345 GILVRFHGMPEWSFAFFQKACRGRKMSFLFDM 250
G + R P W+ AF K +M+F+ D+
Sbjct: 301 GFVAR---APRWAVAF--KFPAQEQMTFVRDV 327


tr_hit_id A9S9N4
Definition tr|A9S9N4|A9S9N4_PHYPA Predicted protein OS=Physcomitrella patens subsp. patens
Align length 58
Score (bit) 90.1
E-value 8.0e-17
Report
BLASTX 2.2.19 [Nov-02-2008]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.

Query= BP918369|Adiantum capillus-veneris mRNA, clone:
YMU001_000112_F11.
(584 letters)

Database: uniprot_trembl.fasta
7,341,751 sequences; 2,391,615,440 total letters

Searching..................................................done



Score E
Sequences producing significant alignments: (bits) Value

tr|A9S9N4|A9S9N4_PHYPA Predicted protein OS=Physcomitrella paten... 90 8e-17
tr|A7P0Y5|A7P0Y5_VITVI Chromosome chr19 scaffold_4, whole genome... 88 3e-16
tr|Q2QSF9|Q2QSF9_ORYSJ Retrotransposon protein, putative, unclas... 84 4e-15
tr|B8BPD2|B8BPD2_ORYSI Putative uncharacterized protein OS=Oryza... 84 4e-15
tr|B8BKI0|B8BKI0_ORYSI Putative uncharacterized protein OS=Oryza... 84 8e-15
tr|Q2R4A0|Q2R4A0_ORYSJ Protein transport protein Sec24-like CEF,... 82 2e-14
tr|Q0ISQ1|Q0ISQ1_ORYSJ Os11g0482100 protein (Fragment) OS=Oryza ... 82 2e-14
tr|B8BKH9|B8BKH9_ORYSI Putative uncharacterized protein OS=Oryza... 82 2e-14
tr|A3CBA1|A3CBA1_ORYSJ Putative uncharacterized protein OS=Oryza... 82 2e-14
tr|A9S9P0|A9S9P0_PHYPA Predicted protein OS=Physcomitrella paten... 79 1e-13
tr|Q0INL9|Q0INL9_ORYSJ Os12g0430000 protein OS=Oryza sativa subs... 71 4e-11
tr|A3CGV8|A3CGV8_ORYSJ Putative uncharacterized protein OS=Oryza... 71 4e-11
tr|Q27GK4|Q27GK4_ARATH Uncharacterized protein At3g44340.1 OS=Ar... 68 3e-10
tr|Q00YP1|Q00YP1_OSTTA S24C_ARATH Protein transport protein Sec2... 62 2e-08
tr|A4S4Y9|A4S4Y9_OSTLU Predicted protein OS=Ostreococcus lucimar... 62 2e-08
tr|B4I2G8|B4I2G8_DROSE GM18251 OS=Drosophila sechellia GN=GM1825... 52 2e-05
tr|Q9VQ94|Q9VQ94_DROME CG10882 OS=Drosophila melanogaster GN=CG1... 52 2e-05
tr|B4Q805|B4Q805_DROSI GD22860 OS=Drosophila simulans GN=GD22860... 52 2e-05
tr|B4NW71|B4NW71_DROYA GE15184 OS=Drosophila yakuba GN=GE15184 P... 52 2e-05
tr|B3N9H8|B3N9H8_DROER GG24544 OS=Drosophila erecta GN=GG24544 P... 51 5e-05
tr|B3MJA3|B3MJA3_DROAN GF15295 OS=Drosophila ananassae GN=GF1529... 51 5e-05
tr|B5DIC2|B5DIC2_DROPS GA25950 OS=Drosophila pseudoobscura pseud... 50 9e-05
tr|B4G951|B4G951_DROPE GL19411 OS=Drosophila persimilis GN=GL194... 50 9e-05
tr|B4KFK7|B4KFK7_DROMO GI18047 OS=Drosophila mojavensis GN=GI180... 48 5e-04
tr|B4JR04|B4JR04_DROGR GH13795 OS=Drosophila grimshawi GN=GH1379... 47 6e-04
tr|B4MVV1|B4MVV1_DROWI GK14994 OS=Drosophila willistoni GN=GK149... 46 0.001
tr|Q641I5|Q641I5_XENLA MGC80413 protein OS=Xenopus laevis GN=sec... 46 0.002
tr|A4QN88|A4QN88_DANRE Wu:fd10d12 protein (Fragment) OS=Danio re... 46 0.002
tr|O61607|O61607_DROHE F12F6.6 (Fragment) OS=Drosophila heterone... 46 0.002
tr|B6NFE8|B6NFE8_BRAFL Putative uncharacterized protein OS=Branc... 45 0.002

>tr|A9S9N4|A9S9N4_PHYPA Predicted protein OS=Physcomitrella patens
subsp. patens GN=PHYPADRAFT_76562 PE=4 SV=1
Length = 1007

Score = 90.1 bits (222), Expect = 8e-17
Identities = 42/58 (72%), Positives = 49/58 (84%)
Frame = -3

Query: 582 VNEIRKERCSYLRFHWCRRGDPLEFLFFSLLVEDKNALGLSYVEYLVHVHRQIQNKMT 409
VNEIR++RCSYLR +RGDP E LF++ LVEDK+ALGLSYVEYLV HRQIQN+MT
Sbjct: 950 VNEIRRQRCSYLRLCMLKRGDPRELLFYNYLVEDKSALGLSYVEYLVQTHRQIQNRMT 1007


>tr|A7P0Y5|A7P0Y5_VITVI Chromosome chr19 scaffold_4, whole genome
shotgun sequence OS=Vitis vinifera GN=GSVIVT00027411001
PE=4 SV=1
Length = 77

Score = 88.2 bits (217), Expect = 3e-16
Identities = 40/58 (68%), Positives = 48/58 (82%)
Frame = -3

Query: 582 VNEIRKERCSYLRFHWCRRGDPLEFLFFSLLVEDKNALGLSYVEYLVHVHRQIQNKMT 409
VNEIR++RCSYLR CR+GD LFFS +VEDK A+GLSYVE+LVH+HRQIQ KM+
Sbjct: 20 VNEIRRQRCSYLRIKLCRKGDASGMLFFSFMVEDKTAIGLSYVEFLVHIHRQIQIKMS 77


>tr|Q2QSF9|Q2QSF9_ORYSJ Retrotransposon protein, putative,
unclassified, expressed OS=Oryza sativa subsp. japonica
GN=LOC_Os12g24250 PE=4 SV=1
Length = 1083

Score = 84.3 bits (207), Expect = 4e-15
Identities = 41/58 (70%), Positives = 46/58 (79%)
Frame = -3

Query: 582 VNEIRKERCSYLRFHWCRRGDPLEFLFFSLLVEDKNALGLSYVEYLVHVHRQIQNKMT 409
VNEIR++RCSYLR C+ GDP F SLLVEDK GLSYVE+LVHVHRQIQ+KMT
Sbjct: 1026 VNEIRRQRCSYLRLRLCKHGDPSGDFFRSLLVEDKAPGGLSYVEFLVHVHRQIQSKMT 1083


>tr|B8BPD2|B8BPD2_ORYSI Putative uncharacterized protein OS=Oryza
sativa subsp. indica GN=OsI_38153 PE=4 SV=1
Length = 1094

Score = 84.3 bits (207), Expect = 4e-15
Identities = 41/58 (70%), Positives = 46/58 (79%)
Frame = -3

Query: 582 VNEIRKERCSYLRFHWCRRGDPLEFLFFSLLVEDKNALGLSYVEYLVHVHRQIQNKMT 409
VNEIR++RCSYLR C+ GDP F SLLVEDK GLSYVE+LVHVHRQIQ+KMT
Sbjct: 1037 VNEIRRQRCSYLRLRLCKHGDPSGDFFRSLLVEDKAPGGLSYVEFLVHVHRQIQSKMT 1094


>tr|B8BKI0|B8BKI0_ORYSI Putative uncharacterized protein OS=Oryza
sativa subsp. indica GN=OsI_36108 PE=4 SV=1
Length = 784

Score = 83.6 bits (205), Expect = 8e-15
Identities = 39/58 (67%), Positives = 46/58 (79%)
Frame = -3

Query: 582 VNEIRKERCSYLRFHWCRRGDPLEFLFFSLLVEDKNALGLSYVEYLVHVHRQIQNKMT 409
+NEIR++RCSYLR CRRG+P F S L+EDK GLSYVE+LVHVHRQIQ+KMT
Sbjct: 727 INEIRRQRCSYLRLRLCRRGEPSGDFFRSFLIEDKAPGGLSYVEFLVHVHRQIQSKMT 784


>tr|Q2R4A0|Q2R4A0_ORYSJ Protein transport protein Sec24-like CEF,
putative, expressed OS=Oryza sativa subsp. japonica
GN=LOC_Os11g29200 PE=4 SV=1
Length = 810

Score = 82.4 bits (202), Expect = 2e-14
Identities = 39/58 (67%), Positives = 45/58 (77%)
Frame = -3

Query: 582 VNEIRKERCSYLRFHWCRRGDPLEFLFFSLLVEDKNALGLSYVEYLVHVHRQIQNKMT 409
+NEIR++RCSYLR CRRG+P F S L EDK GLSYVE+LVHVHRQIQ+KMT
Sbjct: 753 INEIRRQRCSYLRLRLCRRGEPSGDFFRSFLTEDKAPGGLSYVEFLVHVHRQIQSKMT 810


>tr|Q0ISQ1|Q0ISQ1_ORYSJ Os11g0482100 protein (Fragment) OS=Oryza
sativa subsp. japonica GN=Os11g0482100 PE=4 SV=1
Length = 577

Score = 82.4 bits (202), Expect = 2e-14
Identities = 39/58 (67%), Positives = 45/58 (77%)
Frame = -3

Query: 582 VNEIRKERCSYLRFHWCRRGDPLEFLFFSLLVEDKNALGLSYVEYLVHVHRQIQNKMT 409
+NEIR++RCSYLR CRRG+P F S L EDK GLSYVE+LVHVHRQIQ+KMT
Sbjct: 520 INEIRRQRCSYLRLRLCRRGEPSGDFFRSFLTEDKAPGGLSYVEFLVHVHRQIQSKMT 577


>tr|B8BKH9|B8BKH9_ORYSI Putative uncharacterized protein OS=Oryza
sativa subsp. indica GN=OsI_36107 PE=4 SV=1
Length = 363

Score = 82.4 bits (202), Expect = 2e-14
Identities = 39/58 (67%), Positives = 45/58 (77%)
Frame = -3

Query: 582 VNEIRKERCSYLRFHWCRRGDPLEFLFFSLLVEDKNALGLSYVEYLVHVHRQIQNKMT 409
+NEIR++RCSYLR CRRG+P F S L EDK GLSYVE+LVHVHRQIQ+KMT
Sbjct: 306 INEIRRQRCSYLRLRLCRRGEPSGDFFRSFLTEDKAPGGLSYVEFLVHVHRQIQSKMT 363


>tr|A3CBA1|A3CBA1_ORYSJ Putative uncharacterized protein OS=Oryza
sativa subsp. japonica GN=OsJ_032573 PE=4 SV=1
Length = 834

Score = 82.4 bits (202), Expect = 2e-14
Identities = 39/58 (67%), Positives = 45/58 (77%)
Frame = -3

Query: 582 VNEIRKERCSYLRFHWCRRGDPLEFLFFSLLVEDKNALGLSYVEYLVHVHRQIQNKMT 409
+NEIR++RCSYLR CRRG+P F S L EDK GLSYVE+LVHVHRQIQ+KMT
Sbjct: 777 INEIRRQRCSYLRLRLCRRGEPSGDFFRSFLTEDKAPGGLSYVEFLVHVHRQIQSKMT 834


>tr|A9S9P0|A9S9P0_PHYPA Predicted protein OS=Physcomitrella patens
subsp. patens GN=PHYPADRAFT_126303 PE=4 SV=1
Length = 1044

Score = 79.3 bits (194), Expect = 1e-13
Identities = 40/61 (65%), Positives = 46/61 (75%), Gaps = 3/61 (4%)
Frame = -3

Query: 582 VNEIRKERCSYLRFHWCRRGDPLE---FLFFSLLVEDKNALGLSYVEYLVHVHRQIQNKM 412
VNE+R++RCSYLR +RGDP LF + LVEDK ALGLSYVEYLV HRQIQN+M
Sbjct: 984 VNELRRQRCSYLRLQLLKRGDPRGTTFLLFQNYLVEDKTALGLSYVEYLVQTHRQIQNRM 1043

Query: 411 T 409
T
Sbjct: 1044 T 1044