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AcEST | BlastX Result : Swiss-Prot | BlastX Result : TrEMBL | AcESTcontig | About Libraries
NBDC - LSDB Archive
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AcEST | BlastX Result : Swiss-Prot | BlastX Result : TrEMBL | AcESTcontig | About Libraries
BP918373
Clone id YMU001_000112_G03
Library
Length 522
Definition Adiantum capillus-veneris mRNA. clone: YMU001_000112_G03.
Accession
Tissue type prothallium
Developmental stage -
Contig ID -
Sequence 
ACCTAAAAATCCTGGAAAATTGGGTCAGACAAATGGAGTAGGAAATTCTTGACTCCAAAT
TGCAAGTGTCTTCCTGCAACACCTGCAGGTTCGCATCCCTGAGCTGATAGCACATCTGTA
CGTTGGATAATATTCCACTACCCCTTGTGCAAAAAATTGGCCTTCCAACATATTGGCAAG
GTCTTATGTAAAAAAAAACGTCTCTCCCAGCTATATTCATTGGCCATATCAACTCCTTAC
TCTCCTATGGACTTTTCAATACTGGCCAATTGACGTGACCACCATCTATACAGTGCAAAC
TTGTCACCTCATGTTTCTCTCTCCTTTACTTGTAATACATACACCAGCTGACAACGGGAT
GAAAGTGTTGCATTACAAGAGCCCATAAGATGCACCAAAATACAGCAGTTCAATCATCTT
TGTCAGGTCGCCTGTAGTAATAAACATAGATAGGCACCCCATTTCTGGAGGCATGCTTCC
GCAAGAGGCGCTCAATTGCATACCACTCCTTTCGGTCTTGTC
■■Homology search results ■■ -
sp_hit_id Q9CXF7
Definition sp|Q9CXF7|CHD1L_MOUSE Chromodomain-helicase-DNA-binding protein 1-like OS=Mus musculus
Align length 26
Score (bit) 41.2
E-value 0.003
Report 
BLASTX 2.2.19 [Nov-02-2008]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= BP918373|Adiantum capillus-veneris mRNA, clone:
YMU001_000112_G03.
         (522 letters)

Database: uniprot_sprot.fasta 
           412,525 sequences; 148,809,765 total letters

Searching..................................................done



                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

sp|Q9CXF7|CHD1L_MOUSE Chromodomain-helicase-DNA-binding protein ...    41   0.003
sp|Q86WJ1|CHD1L_HUMAN Chromodomain-helicase-DNA-binding protein ...    41   0.003
sp|Q3B7N1|CHD1L_BOVIN Chromodomain-helicase-DNA-binding protein ...    41   0.003
sp|Q7ZU90|CHD1L_DANRE Chromodomain-helicase-DNA-binding protein ...    38   0.033
sp|Q9UNK9|ANGE1_HUMAN Protein angel homolog 1 OS=Homo sapiens GN...    33   1.1  
sp|P28263|UBC8_YEAST Ubiquitin-conjugating enzyme E2-24 kDa OS=S...    32   1.4  
sp|B2RYM0|ANGE1_RAT Protein angel homolog 1 OS=Rattus norvegicus...    32   1.8  
sp|Q8VCU0|ANGE1_MOUSE Protein angel homolog 1 OS=Mus musculus GN...    32   1.8  
sp|Q3UH60|DIP2B_MOUSE Disco-interacting protein 2 homolog B OS=M...    31   4.0  
sp|Q9Z2Z9|GFPT2_MOUSE Glucosamine--fructose-6-phosphate aminotra...    30   5.3  
sp|Q9P265|DIP2B_HUMAN Disco-interacting protein 2 homolog B OS=H...    30   5.3  

>sp|Q9CXF7|CHD1L_MOUSE Chromodomain-helicase-DNA-binding protein
           1-like OS=Mus musculus GN=Chd1l PE=2 SV=1
          Length = 900

 Score = 41.2 bits (95), Expect = 0.003
 Identities = 14/26 (53%), Positives = 19/26 (73%)
 Frame = -3

Query: 505 WYAIERLLRKHASRNGVPIYVYYYRR 428
           WY  ERL+RKH +  G+P Y+YY+ R
Sbjct: 857 WYGTERLIRKHLATRGIPTYIYYFPR 882


>sp|Q86WJ1|CHD1L_HUMAN Chromodomain-helicase-DNA-binding protein
           1-like OS=Homo sapiens GN=CHD1L PE=1 SV=1
          Length = 897

 Score = 41.2 bits (95), Expect = 0.003
 Identities = 14/26 (53%), Positives = 19/26 (73%)
 Frame = -3

Query: 505 WYAIERLLRKHASRNGVPIYVYYYRR 428
           WY  ERL+RKH +  G+P Y+YY+ R
Sbjct: 852 WYGTERLIRKHLAARGIPTYIYYFPR 877


>sp|Q3B7N1|CHD1L_BOVIN Chromodomain-helicase-DNA-binding protein
           1-like OS=Bos taurus GN=CHD1L PE=2 SV=1
          Length = 897

 Score = 41.2 bits (95), Expect = 0.003
 Identities = 14/26 (53%), Positives = 19/26 (73%)
 Frame = -3

Query: 505 WYAIERLLRKHASRNGVPIYVYYYRR 428
           WY  ERL+RKH +  G+P Y+YY+ R
Sbjct: 852 WYGTERLIRKHLASRGIPTYIYYFPR 877


>sp|Q7ZU90|CHD1L_DANRE Chromodomain-helicase-DNA-binding protein
           1-like OS=Danio rerio GN=chd1l PE=2 SV=1
          Length = 1026

 Score = 37.7 bits (86), Expect = 0.033
 Identities = 14/26 (53%), Positives = 18/26 (69%)
 Frame = -3

Query: 505 WYAIERLLRKHASRNGVPIYVYYYRR 428
           WY  ERL+RKH +  G+   +YYYRR
Sbjct: 845 WYGTERLIRKHLATRGIFTSIYYYRR 870


>sp|Q9UNK9|ANGE1_HUMAN Protein angel homolog 1 OS=Homo sapiens
           GN=ANGEL1 PE=1 SV=1
          Length = 670

 Score = 32.7 bits (73), Expect = 1.1
 Identities = 15/53 (28%), Positives = 28/53 (52%), Gaps = 6/53 (11%)
 Frame = +2

Query: 167 NILARSYVKKNVS------PSYIHWPYQLLTLLWTFQYWPIDVTTIYTVQTCH 307
           NILA+  ++++        P  ++W Y+ + L+  FQ+W  D+  +  VQ  H
Sbjct: 251 NILAQDLMQQSSELYLHCHPDILNWNYRFVNLMQEFQHWDPDILCLQEVQEDH 303


>sp|P28263|UBC8_YEAST Ubiquitin-conjugating enzyme E2-24 kDa
           OS=Saccharomyces cerevisiae GN=UBC8 PE=1 SV=2
          Length = 218

 Score = 32.3 bits (72), Expect = 1.4
 Identities = 24/69 (34%), Positives = 35/69 (50%)
 Frame = +2

Query: 290 TVQTCHLMFLSPLLVIHTPADNGMKVLHYKSP*DAPKYSSSIIFVRSPVVINIDRHPISG 469
           ++Q  H+ FL P     TP +NG+  LH + P + P  S SI FV      NID   I+ 
Sbjct: 28  SMQEFHVKFLGPK---DTPYENGVWRLHVELPDNYPYKSPSIGFVNKIFHPNID---IAS 81

Query: 470 GMLPQEALN 496
           G +  + +N
Sbjct: 82  GSICLDVIN 90


>sp|B2RYM0|ANGE1_RAT Protein angel homolog 1 OS=Rattus norvegicus
           GN=Angel1 PE=2 SV=2
          Length = 667

 Score = 32.0 bits (71), Expect = 1.8
 Identities = 15/53 (28%), Positives = 27/53 (50%), Gaps = 6/53 (11%)
 Frame = +2

Query: 167 NILARSYVKKNVS------PSYIHWPYQLLTLLWTFQYWPIDVTTIYTVQTCH 307
           NILA+  ++++        P  ++W Y+   L+  FQ+W  D+  +  VQ  H
Sbjct: 248 NILAQDLMQQSSELYLHCHPDILNWNYRFANLMQEFQHWDPDILCLQEVQEDH 300


>sp|Q8VCU0|ANGE1_MOUSE Protein angel homolog 1 OS=Mus musculus
           GN=Angel1 PE=2 SV=2
          Length = 667

 Score = 32.0 bits (71), Expect = 1.8
 Identities = 15/53 (28%), Positives = 27/53 (50%), Gaps = 6/53 (11%)
 Frame = +2

Query: 167 NILARSYVKKNVS------PSYIHWPYQLLTLLWTFQYWPIDVTTIYTVQTCH 307
           NILA+  ++++        P  ++W Y+   L+  FQ+W  D+  +  VQ  H
Sbjct: 248 NILAQDLMQQSSELYLHCHPDILNWNYRFANLMQEFQHWDPDILCLQEVQEDH 300


>sp|Q3UH60|DIP2B_MOUSE Disco-interacting protein 2 homolog B OS=Mus
           musculus GN=Dip2b PE=1 SV=1
          Length = 1574

 Score = 30.8 bits (68), Expect = 4.0
 Identities = 11/21 (52%), Positives = 15/21 (71%)
 Frame = -2

Query: 515 PKGVVCN*APLAEACLQKWGA 453
           P GV+CN  P  E+ LQ+WG+
Sbjct: 326 PLGVICNWPPALESALQRWGS 346


>sp|Q9Z2Z9|GFPT2_MOUSE Glucosamine--fructose-6-phosphate
           aminotransferase [isomerizing] 2 OS=Mus musculus
           GN=Gfpt2 PE=2 SV=3
          Length = 682

 Score = 30.4 bits (67), Expect = 5.3
 Identities = 19/55 (34%), Positives = 29/55 (52%)
 Frame = -3

Query: 172 YVGRPIFCTRGSGILSNVQMCYQLRDANLQVLQEDTCNLESRISYSICLTQFSRI 8
           Y G  +   RGS +L  V+  Y+L    + VL   TCN+E+    +IC T+  R+
Sbjct: 191 YPGEAVATRRGSPLLIGVRSKYKLSTEQIPVLY-PTCNIEN--VKNICKTRMKRL 242
tr_hit_id A9TQZ8
Definition tr|A9TQZ8|A9TQZ8_PHYPA SNF2 family DNA-dependent ATPase OS=Physcomitrella patens subsp. patens
Align length 32
Score (bit) 53.1
E-value 8.0e-06
Report 
BLASTX 2.2.19 [Nov-02-2008]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= BP918373|Adiantum capillus-veneris mRNA, clone:
YMU001_000112_G03.
         (522 letters)

Database: uniprot_trembl.fasta 
           7,341,751 sequences; 2,391,615,440 total letters

Searching..................................................done



                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

tr|A9TQZ8|A9TQZ8_PHYPA SNF2 family DNA-dependent ATPase OS=Physc...    53   8e-06
tr|Q8GZN6|Q8GZN6_HORVU SNF2P OS=Hordeum vulgare GN=Snf2P PE=4 SV=1     52   1e-05
tr|Q6RYF0|Q6RYF0_HORVD SNF2P OS=Hordeum vulgare var. distichum G...    52   1e-05
tr|B8PZF6|B8PZF6_HORVD SNF2P (Fragment) OS=Hordeum vulgare var. ...    52   1e-05
tr|B8PZF3|B8PZF3_HORVD SNF2P (Fragment) OS=Hordeum vulgare var. ...    52   1e-05
tr|B8PZE5|B8PZE5_HORVD SNF2P (Fragment) OS=Hordeum vulgare var. ...    52   1e-05
tr|B8PZC8|B8PZC8_HORVD SNF2P (Fragment) OS=Hordeum vulgare var. ...    52   1e-05
tr|B8PZC7|B8PZC7_HORVD SNF2P (Fragment) OS=Hordeum vulgare var. ...    52   1e-05
tr|Q6RYE3|Q6RYE3_TRIMO SNF2P OS=Triticum monococcum GN=Tm_AY4856...    52   2e-05
tr|B7U385|B7U385_TRITU SNF2P OS=Triticum turgidum PE=4 SV=1            52   2e-05
tr|Q8GSF4|Q8GSF4_ORYSJ SNF2P OS=Oryza sativa subsp. japonica GN=...    51   3e-05
tr|Q10T47|Q10T47_ORYSJ Os03g0101700 protein OS=Oryza sativa subs...    51   3e-05
tr|Q3E6Q7|Q3E6Q7_ARATH Uncharacterized protein At2g44980.2 OS=Ar...    45   0.002
tr|A7PKF4|A7PKF4_VITVI Chromosome chr15 scaffold_19, whole genom...    44   0.005
tr|B6LK52|B6LK52_BRAFL Putative uncharacterized protein (Fragmen...    42   0.024
tr|A6MWB9|A6MWB9_TRITU SNF2P OS=Triticum turgidum PE=4 SV=1            41   0.031
tr|Q9H678|Q9H678_HUMAN cDNA: FLJ22530 fis, clone HRC12866 OS=Hom...    41   0.031
tr|B4DLS6|B4DLS6_HUMAN cDNA FLJ55722, highly similar to Homo sap...    41   0.031
tr|B4DDE1|B4DDE1_HUMAN cDNA FLJ59452, highly similar to Homo sap...    41   0.031
tr|B3S4A8|B3S4A8_TRIAD Putative uncharacterized protein OS=Trich...    34   5.0  
tr|Q28CP7|Q28CP7_XENTR Angel homolog 1 (Drosophila) OS=Xenopus t...    33   6.5  
tr|Q7XJM1|Q7XJM1_ARATH SNF2 subfamily global transcription activ...    33   6.5  
tr|Q2U3D3|Q2U3D3_ASPOR Polyketide synthase modules and related p...    33   6.5  
tr|Q197J6|Q197J6_RICFL NADH-ubiquinone oxidoreductase chain 5 OS...    33   8.5  
tr|Q5AUN0|Q5AUN0_EMENI Putative uncharacterized protein OS=Emeri...    33   8.6  

>tr|A9TQZ8|A9TQZ8_PHYPA SNF2 family DNA-dependent ATPase
           OS=Physcomitrella patens subsp. patens GN=CHR1525 PE=4
           SV=1
          Length = 808

 Score = 53.1 bits (126), Expect = 8e-06
 Identities = 22/32 (68%), Positives = 26/32 (81%)
 Frame = -3

Query: 520 QDRKEWYAIERLLRKHASRNGVPIYVYYYRRP 425
           Q + EWYA+ERLLRK+A+   VP YVYYYRRP
Sbjct: 777 QGKNEWYAVERLLRKYATGYDVPFYVYYYRRP 808


>tr|Q8GZN6|Q8GZN6_HORVU SNF2P OS=Hordeum vulgare GN=Snf2P PE=4 SV=1
          Length = 882

 Score = 52.4 bits (124), Expect = 1e-05
 Identities = 21/32 (65%), Positives = 27/32 (84%)
 Frame = -3

Query: 514 RKEWYAIERLLRKHASRNGVPIYVYYYRRPDK 419
           R EWY IERLLRK+AS +G+ I+VYY+RRP +
Sbjct: 845 RSEWYTIERLLRKYASLHGIDIFVYYFRRPSR 876


>tr|Q6RYF0|Q6RYF0_HORVD SNF2P OS=Hordeum vulgare var. distichum
           GN=615K1.5 PE=4 SV=1
          Length = 882

 Score = 52.4 bits (124), Expect = 1e-05
 Identities = 21/32 (65%), Positives = 27/32 (84%)
 Frame = -3

Query: 514 RKEWYAIERLLRKHASRNGVPIYVYYYRRPDK 419
           R EWY IERLLRK+AS +G+ I+VYY+RRP +
Sbjct: 845 RSEWYTIERLLRKYASLHGIDIFVYYFRRPSR 876


>tr|B8PZF6|B8PZF6_HORVD SNF2P (Fragment) OS=Hordeum vulgare var.
           distichum GN=Snf2P PE=4 SV=1
          Length = 87

 Score = 52.4 bits (124), Expect = 1e-05
 Identities = 21/32 (65%), Positives = 27/32 (84%)
 Frame = -3

Query: 514 RKEWYAIERLLRKHASRNGVPIYVYYYRRPDK 419
           R EWY IERLLRK+AS +G+ I+VYY+RRP +
Sbjct: 50  RSEWYTIERLLRKYASLHGIDIFVYYFRRPSR 81


>tr|B8PZF3|B8PZF3_HORVD SNF2P (Fragment) OS=Hordeum vulgare var.
           distichum GN=Snf2P PE=4 SV=1
          Length = 87

 Score = 52.4 bits (124), Expect = 1e-05
 Identities = 21/32 (65%), Positives = 27/32 (84%)
 Frame = -3

Query: 514 RKEWYAIERLLRKHASRNGVPIYVYYYRRPDK 419
           R EWY IERLLRK+AS +G+ I+VYY+RRP +
Sbjct: 50  RSEWYTIERLLRKYASLHGIDIFVYYFRRPSR 81


>tr|B8PZE5|B8PZE5_HORVD SNF2P (Fragment) OS=Hordeum vulgare var.
           distichum GN=Snf2P PE=4 SV=1
          Length = 47

 Score = 52.4 bits (124), Expect = 1e-05
 Identities = 21/32 (65%), Positives = 27/32 (84%)
 Frame = -3

Query: 514 RKEWYAIERLLRKHASRNGVPIYVYYYRRPDK 419
           R EWY IERLLRK+AS +G+ I+VYY+RRP +
Sbjct: 10  RSEWYTIERLLRKYASLHGIDIFVYYFRRPSR 41


>tr|B8PZC8|B8PZC8_HORVD SNF2P (Fragment) OS=Hordeum vulgare var.
           distichum GN=Snf2P PE=4 SV=1
          Length = 47

 Score = 52.4 bits (124), Expect = 1e-05
 Identities = 21/32 (65%), Positives = 27/32 (84%)
 Frame = -3

Query: 514 RKEWYAIERLLRKHASRNGVPIYVYYYRRPDK 419
           R EWY IERLLRK+AS +G+ I+VYY+RRP +
Sbjct: 10  RSEWYTIERLLRKYASLHGIDIFVYYFRRPSR 41


>tr|B8PZC7|B8PZC7_HORVD SNF2P (Fragment) OS=Hordeum vulgare var.
           distichum GN=Snf2P PE=4 SV=1
          Length = 90

 Score = 52.4 bits (124), Expect = 1e-05
 Identities = 21/32 (65%), Positives = 27/32 (84%)
 Frame = -3

Query: 514 RKEWYAIERLLRKHASRNGVPIYVYYYRRPDK 419
           R EWY IERLLRK+AS +G+ I+VYY+RRP +
Sbjct: 53  RSEWYTIERLLRKYASLHGIDIFVYYFRRPSR 84


>tr|Q6RYE3|Q6RYE3_TRIMO SNF2P OS=Triticum monococcum
           GN=Tm_AY485644.6 PE=4 SV=1
          Length = 882

 Score = 52.0 bits (123), Expect = 2e-05
 Identities = 21/32 (65%), Positives = 27/32 (84%)
 Frame = -3

Query: 514 RKEWYAIERLLRKHASRNGVPIYVYYYRRPDK 419
           R EWY IERLLRK+AS +G+ I+VYY+RRP +
Sbjct: 845 RSEWYTIERLLRKYASLHGIDIFVYYFRRPTR 876


>tr|B7U385|B7U385_TRITU SNF2P OS=Triticum turgidum PE=4 SV=1
          Length = 882

 Score = 52.0 bits (123), Expect = 2e-05
 Identities = 21/32 (65%), Positives = 27/32 (84%)
 Frame = -3

Query: 514 RKEWYAIERLLRKHASRNGVPIYVYYYRRPDK 419
           R EWY IERLLRK+AS +G+ I+VYY+RRP +
Sbjct: 845 RSEWYTIERLLRKYASLHGIDIFVYYFRRPTR 876