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NBDC - LSDB Archive
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BP918383
Clone id YMU001_000112_H03
Library
Length 522
Definition Adiantum capillus-veneris mRNA. clone: YMU001_000112_H03.
Accession
Tissue type prothallium
Developmental stage -
Contig ID -
Sequence 
AACCGGAAGAATTCGCGGCCGCGAATTTTTTTTTTTTTGAGGGTATTCTAGTGTAATATG
CCCTTGCTTATTACAGATGTAGCATCGTACCTATTTCTTTTCTTCTTTGCTGAATTTGCG
TTTTCAGCGTGCTAACTCAAACTTCTTCCCATACTTGTTCTTCCGTTGCTTGATCTTGCA
GTTACATTTGGCTTTATCTCTACACCAAAAAGTCTTGGCTTTATCTTCTTTGTCACAAAA
GTTAAGAGTTGAATCCTTTGACATGTTTAATATCTTTCTTCATCCTGATGCGAGTACATT
CCAAGTTAGTTACTTCATCAATGAAAGAATTAATTTGGGCTAAAGAGATAAATCTCATTT
AAATAGAGACCAGTTGCTTTAATCCTTTCCTTCACAAGATTAGCAAATGACTGAGGGAAA
GAGCTGATGTAATACTACTTATACTCAAATTTAAAGTATCCTCCCGGGAATCGATACATA
AGATGAGTCATATACGGCTGGTATTTTTTGATCTGAGTAAGA
■■Homology search results ■■ -
sp_hit_id P16473
Definition sp|P16473|TSHR_HUMAN Thyrotropin receptor OS=Homo sapiens
Align length 69
Score (bit) 30.0
E-value 5.7
Report 
BLASTX 2.2.19 [Nov-02-2008]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= BP918383|Adiantum capillus-veneris mRNA, clone:
YMU001_000112_H03.
         (484 letters)

Database: uniprot_sprot.fasta 
           412,525 sequences; 148,809,765 total letters

Searching..................................................done



                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

sp|P16473|TSHR_HUMAN Thyrotropin receptor OS=Homo sapiens GN=TSH...    30   5.7  
sp|Q1LVV0|FA83H_DANRE Protein FAM83H OS=Danio rerio GN=fam83h PE...    30   5.7  
sp|P03542|CAPSD_CAMVS Capsid protein OS=Cauliflower mosaic virus...    30   5.7  
sp|P47750|TSHR_MOUSE Thyrotropin receptor OS=Mus musculus GN=Tsh...    29   9.8  
sp|Q9BGN4|TSHR_FELCA Thyrotropin receptor OS=Felis silvestris ca...    29   9.8  
sp|P14763|TSHR_CANFA Thyrotropin receptor OS=Canis familiaris GN...    29   9.8  
sp|Q9UU76|PUF6_SCHPO Protein puf6 OS=Schizosaccharomyces pombe G...    29   9.8  

>sp|P16473|TSHR_HUMAN Thyrotropin receptor OS=Homo sapiens GN=TSHR
           PE=1 SV=2
          Length = 764

 Score = 30.0 bits (66), Expect = 5.7
 Identities = 23/69 (33%), Positives = 37/69 (53%), Gaps = 1/69 (1%)
 Frame = +1

Query: 232 ISFFILMRVHSK-LVTSSMKELIWAKEINLI*IETSCFNPFLHKISK*LRERADVILLIL 408
           ISF+ L  + +K L+T S  +++      L     SC NPFL+ I     +R DV +L+ 
Sbjct: 640 ISFYALSAILNKPLITVSNSKILLVLFYPL----NSCANPFLYAIFTKAFQR-DVFILLS 694

Query: 409 KFKVSSRES 435
           KF +  R++
Sbjct: 695 KFGICKRQA 703


>sp|Q1LVV0|FA83H_DANRE Protein FAM83H OS=Danio rerio GN=fam83h PE=3
            SV=1
          Length = 1192

 Score = 30.0 bits (66), Expect = 5.7
 Identities = 18/57 (31%), Positives = 33/57 (57%)
 Frame = -2

Query: 195  TKKIKPRLFGVEIKPNVTARSSNGRTSMGRSLS*HAENANSAKKKRNRYDATSVISK 25
            TK +KP      +KP  +++SS+ R S G  +   A +A  ++ K++R  +TS +S+
Sbjct: 924  TKSLKPFPSPKFLKPFKSSQSSSRRISCGEEILTDATDAEKSELKKSRSFSTSGMSR 980


>sp|P03542|CAPSD_CAMVS Capsid protein OS=Cauliflower mosaic virus
           (strain Strasbourg) GN=ORF IV PE=3 SV=1
          Length = 489

 Score = 30.0 bits (66), Expect = 5.7
 Identities = 25/86 (29%), Positives = 31/86 (36%), Gaps = 6/86 (6%)
 Frame = -1

Query: 241 RKILNMSKDSTLNFCDKEDKAKTFWCRDKAKCNC------KIKQRKNKYGKKFELAXXXX 80
           +K  ++ + ST   C K    K    R K K         K K R  KY K  E      
Sbjct: 343 KKCCSIGEASTEYGCKKTSTKKYHKKRYKKKYKAYKPYKKKKKFRSGKYFKPKEKKGSKQ 402

Query: 79  XXXXXXXX*VRCYICNKQGHITLEYP 2
                     RC+ICN +GH   E P
Sbjct: 403 KYCPKGKKDCRCWICNIEGHYANECP 428


>sp|P47750|TSHR_MOUSE Thyrotropin receptor OS=Mus musculus GN=Tshr
           PE=1 SV=2
          Length = 764

 Score = 29.3 bits (64), Expect = 9.8
 Identities = 24/71 (33%), Positives = 37/71 (52%), Gaps = 3/71 (4%)
 Frame = +1

Query: 232 ISFFILMRVHSK---LVTSSMKELIWAKEINLI*IETSCFNPFLHKISK*LRERADVILL 402
           ISF+ L  + +K    VT+S   L+    +N      SC NPFL+ I     +R DV +L
Sbjct: 640 ISFYALSALMNKPLITVTNSKILLVLFYPLN------SCANPFLYAIFTKAFQR-DVFIL 692

Query: 403 ILKFKVSSRES 435
           + KF +  R++
Sbjct: 693 LSKFGICKRQA 703


>sp|Q9BGN4|TSHR_FELCA Thyrotropin receptor OS=Felis silvestris catus
           GN=TSHR PE=2 SV=1
          Length = 763

 Score = 29.3 bits (64), Expect = 9.8
 Identities = 24/71 (33%), Positives = 37/71 (52%), Gaps = 3/71 (4%)
 Frame = +1

Query: 232 ISFFILMRVHSK---LVTSSMKELIWAKEINLI*IETSCFNPFLHKISK*LRERADVILL 402
           ISF+ L  + +K    VT+S   L+    +N      SC NPFL+ I     +R DV +L
Sbjct: 639 ISFYALSALMNKPLITVTNSKILLVLFYPLN------SCANPFLYAIFTKTFQR-DVFIL 691

Query: 403 ILKFKVSSRES 435
           + KF +  R++
Sbjct: 692 LSKFGICKRQA 702


>sp|P14763|TSHR_CANFA Thyrotropin receptor OS=Canis familiaris
           GN=TSHR PE=2 SV=1
          Length = 764

 Score = 29.3 bits (64), Expect = 9.8
 Identities = 24/71 (33%), Positives = 37/71 (52%), Gaps = 3/71 (4%)
 Frame = +1

Query: 232 ISFFILMRVHSK---LVTSSMKELIWAKEINLI*IETSCFNPFLHKISK*LRERADVILL 402
           ISF+ L  + +K    VT+S   L+    +N      SC NPFL+ I     +R DV +L
Sbjct: 640 ISFYALSALMNKPLITVTNSKILLVLFYPLN------SCANPFLYAIFTKAFQR-DVFIL 692

Query: 403 ILKFKVSSRES 435
           + KF +  R++
Sbjct: 693 LSKFGICKRQA 703


>sp|Q9UU76|PUF6_SCHPO Protein puf6 OS=Schizosaccharomyces pombe
           GN=puf6 PE=1 SV=1
          Length = 642

 Score = 29.3 bits (64), Expect = 9.8
 Identities = 15/49 (30%), Positives = 25/49 (51%)
 Frame = -1

Query: 241 RKILNMSKDSTLNFCDKEDKAKTFWCRDKAKCNCKIKQRKNKYGKKFEL 95
           RK L   + +   F D   KAK+ W + + K + K ++RK    + F+L
Sbjct: 113 RKKLQKERKAMKPFADTSLKAKSLWDKLRQKTSIKAEERKTIIAELFDL 161
tr_hit_id B0CZA2
Definition tr|B0CZA2|B0CZA2_LACBS Predicted protein OS=Laccaria bicolor (strain S238N-H82)
Align length 37
Score (bit) 33.5
E-value 5.4
Report 
BLASTX 2.2.19 [Nov-02-2008]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= BP918383|Adiantum capillus-veneris mRNA, clone:
YMU001_000112_H03.
         (484 letters)

Database: uniprot_trembl.fasta 
           7,341,751 sequences; 2,391,615,440 total letters

Searching..................................................done



                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

tr|B0CZA2|B0CZA2_LACBS Predicted protein OS=Laccaria bicolor (st...    33   5.4  
tr|A0E0I1|A0E0I1_PARTE Chromosome undetermined scaffold_71, whol...    33   7.0  

>tr|B0CZA2|B0CZA2_LACBS Predicted protein OS=Laccaria bicolor
           (strain S238N-H82) GN=LACBIDRAFT_323152 PE=4 SV=1
          Length = 280

 Score = 33.5 bits (75), Expect = 5.4
 Identities = 17/37 (45%), Positives = 22/37 (59%)
 Frame = -3

Query: 317 RFISLAQINSFIDEVTNLECTRIRMKKDIKHVKGFNS 207
           RF S A+I SF   + NL   R+R  + I HVKG +S
Sbjct: 157 RFDSNAKITSFYRCLVNLRIARLRQSRSILHVKGISS 193


>tr|A0E0I1|A0E0I1_PARTE Chromosome undetermined scaffold_71, whole
           genome shotgun sequence OS=Paramecium tetraurelia
           GN=GSPATT00021966001 PE=4 SV=1
          Length = 966

 Score = 33.1 bits (74), Expect = 7.0
 Identities = 20/53 (37%), Positives = 22/53 (41%)
 Frame = -1

Query: 160 DKAKCNCKIKQRKNKYGKKFELAXXXXXXXXXXXX*VRCYICNKQGHITLEYP 2
           DK++    I Q KN Y K  EL              V C  CNK  HI LE P
Sbjct: 629 DKSQFMEIISQHKNDYYKYCELVQQISFMNQQELVDVTCRACNKSTHIILECP 681