BP918384
Clone id YMU001_000112_H04
Library
Length 262
Definition Adiantum capillus-veneris mRNA. clone: YMU001_000112_H04.
Accession
Tissue type prothallium
Developmental stage -
Contig ID
Sequence
GCCTCTGTGTAACAATCCCTCCATAAACCCACATATGACCCAGACATCAATGAGGCAGAT
CTCGACAGAAAGCTTCCTCACTCTACCGCCTATACGTTATTCATCTGAGTCGGATCCTGC
ATTTTCTCCACCTCGCCGAACACTACTCTTCTTGCCCTTTACCCTTTGCATTGACATTTC
TCCATCCAATGTCAACATGCTGGACTTTGCCAGCCTCTCTTCCAGCTCCTCTGTAGTGAA
CTCATCAGTTCCTCCCAATTCA
■■Homology search results ■■ -
sp_hit_id O64628
Definition sp|O64628|TXND9_ARATH Thioredoxin domain-containing protein 9 homolog OS=Arabidopsis thaliana
Align length 53
Score (bit) 48.9
E-value 8.0e-06
Report
BLASTX 2.2.19 [Nov-02-2008]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.

Query= BP918384|Adiantum capillus-veneris mRNA, clone:
YMU001_000112_H04.
(262 letters)

Database: uniprot_sprot.fasta
412,525 sequences; 148,809,765 total letters

Searching..................................................done



Score E
Sequences producing significant alignments: (bits) Value

sp|O64628|TXND9_ARATH Thioredoxin domain-containing protein 9 ho... 49 8e-06
sp|Q11183|TXND9_CAEEL Thioredoxin domain-containing protein 9 ho... 44 3e-04
sp|O14530|TXND9_HUMAN Thioredoxin domain-containing protein 9 OS... 35 0.12
sp|O18883|TXND9_BOVIN Thioredoxin domain-containing protein 9 OS... 34 0.26
sp|P69205|CH60_TROWT 60 kDa chaperonin OS=Tropheryma whipplei (s... 33 0.34
sp|P69204|CH60_TROWH 60 kDa chaperonin OS=Tropheryma whipplei GN... 33 0.34
sp|Q83NN0|CH60_TROW8 60 kDa chaperonin OS=Tropheryma whipplei (s... 33 0.34
sp|Q8K581|TXND9_RAT Thioredoxin domain-containing protein 9 OS=R... 33 0.45
sp|Q9CQ79|TXND9_MOUSE Thioredoxin domain-containing protein 9 OS... 33 0.45
sp|Q9K2U4|CH601_PROAC 60 kDa chaperonin 1 OS=Propionibacterium a... 32 0.77
sp|Q4JXN8|CH601_CORJK 60 kDa chaperonin 1 OS=Corynebacterium jei... 32 0.77
sp|Q93G07|CH60_LACAC 60 kDa chaperonin OS=Lactobacillus acidophi... 32 1.0
sp|Q8CY22|CH602_COREF 60 kDa chaperonin 2 OS=Corynebacterium eff... 32 1.0
sp|P97086|CH60_TSUTY 60 kDa chaperonin OS=Tsukamurella tyrosinos... 32 1.3
sp|B0USK6|CH60_HAES2 60 kDa chaperonin OS=Haemophilus somnus (st... 31 1.7
sp|Q0I284|CH60_HAES1 60 kDa chaperonin OS=Haemophilus somnus (st... 31 1.7
sp|Q9KXU5|CH602_STRCO 60 kDa chaperonin 2 OS=Streptomyces coelic... 31 1.7
sp|Q0S3B9|CH602_RHOSR 60 kDa chaperonin 2 OS=Rhodococcus sp. (st... 31 1.7
sp|A1T577|CH602_MYCVP 60 kDa chaperonin 2 OS=Mycobacterium vanba... 31 2.2
sp|Q0AVV1|CH60_SYNWW 60 kDa chaperonin OS=Syntrophomonas wolfei ... 30 2.9
sp|Q0VRW6|CH60_ALCBS 60 kDa chaperonin OS=Alcanivorax borkumensi... 30 2.9
sp|A6VM38|CH60_ACTSZ 60 kDa chaperonin OS=Actinobacillus succino... 30 2.9
sp|A0KCS0|CH603_BURCH 60 kDa chaperonin 3 OS=Burkholderia cenoce... 30 2.9
sp|Q82GG6|CH602_STRAW 60 kDa chaperonin 2 OS=Streptomyces avermi... 30 2.9
sp|Q1BV70|CH602_BURCA 60 kDa chaperonin 2 OS=Burkholderia cenoce... 30 2.9
sp|Q5SSZ5|TENS3_MOUSE Tensin-3 OS=Mus musculus GN=Tns3 PE=1 SV=1 30 3.8
sp|Q43298|CH62_MAIZE Chaperonin CPN60-2, mitochondrial OS=Zea ma... 30 3.8
sp|Q65VE4|CH60_MANSM 60 kDa chaperonin OS=Mannheimia succinicipr... 30 3.8
sp|P43733|CH60_HAEIN 60 kDa chaperonin OS=Haemophilus influenzae... 30 3.8
sp|A5UH48|CH60_HAEIG 60 kDa chaperonin OS=Haemophilus influenzae... 30 3.8

>sp|O64628|TXND9_ARATH Thioredoxin domain-containing protein 9
homolog OS=Arabidopsis thaliana GN=At2g18990 PE=2 SV=1
Length = 211

Score = 48.9 bits (115), Expect = 8e-06
Identities = 24/53 (45%), Positives = 35/53 (66%)
Frame = -2

Query: 261 ELGGTDEFTTEELEERLAKSSMLTLDGEMSMQRVKGKKSSVRRGGENAGSDSD 103
ELGG D+F+TE+LEER+A++ ++ DGE S + K R ++A SDSD
Sbjct: 157 ELGGKDDFSTEDLEERIARAQVIHYDGESSSLKPKSTTQVRRNVRQSARSDSD 209


>sp|Q11183|TXND9_CAEEL Thioredoxin domain-containing protein 9
homolog OS=Caenorhabditis elegans GN=tag-170 PE=2 SV=1
Length = 208

Score = 43.9 bits (102), Expect = 3e-04
Identities = 23/53 (43%), Positives = 31/53 (58%)
Frame = -2

Query: 261 ELGGTDEFTTEELEERLAKSSMLTLDGEMSMQRVKGKKSSVRRGGENAGSDSD 103
ELGG DEFTTE +E RLA+S +LT++ KK +R G E ++ D
Sbjct: 158 ELGGKDEFTTETMENRLARSEVLTVE---KKHTAPAKKKIIRSGVEEYDNEED 207


>sp|O14530|TXND9_HUMAN Thioredoxin domain-containing protein 9
OS=Homo sapiens GN=TXNDC9 PE=1 SV=2
Length = 226

Score = 35.0 bits (79), Expect = 0.12
Identities = 23/65 (35%), Positives = 32/65 (49%), Gaps = 11/65 (16%)
Frame = -2

Query: 261 ELGGTDEFTTEELEERLAKSSMLTLDGEM-----------SMQRVKGKKSSVRRGGENAG 115
+LG TD+FTTE LE RL S +L G + K +K ++R G+
Sbjct: 163 DLGNTDDFTTETLEWRLGSSDILNYSGNLMEPPFQNQKKFGTNFTKLEKKTIR--GKKYD 220

Query: 114 SDSDE 100
SDSD+
Sbjct: 221 SDSDD 225


>sp|O18883|TXND9_BOVIN Thioredoxin domain-containing protein 9
OS=Bos taurus GN=TXNDC9 PE=2 SV=2
Length = 226

Score = 33.9 bits (76), Expect = 0.26
Identities = 23/65 (35%), Positives = 32/65 (49%), Gaps = 11/65 (16%)
Frame = -2

Query: 261 ELGGTDEFTTEELEERLAKSSMLTLDGEM-----------SMQRVKGKKSSVRRGGENAG 115
+LG TD+FTTE LE RL S +L G + K +K ++R G+
Sbjct: 163 DLGNTDDFTTETLEWRLGCSDILNYSGNLMEPPFQSQKKFGTNFTKLEKKTIR--GKKYD 220

Query: 114 SDSDE 100
SDSD+
Sbjct: 221 SDSDD 225


>sp|P69205|CH60_TROWT 60 kDa chaperonin OS=Tropheryma whipplei
(strain Twist) GN=groL PE=3 SV=1
Length = 540

Score = 33.5 bits (75), Expect = 0.34
Identities = 17/55 (30%), Positives = 31/55 (56%)
Frame = -2

Query: 213 LAKSSMLTLDGEMSMQRVKGKKSSVRRGGENAGSDSDE*RIGGRVRKLSVEICLI 49
++K +DG S ++ G+ S +R+ EN+ SD D ++ R+ KLS + +I
Sbjct: 323 VSKDETTIVDGAGSSDQIAGRVSQIRKELENSDSDYDREKLQERLAKLSGGVAVI 377


>sp|P69204|CH60_TROWH 60 kDa chaperonin OS=Tropheryma whipplei
GN=groL PE=3 SV=1
Length = 540

Score = 33.5 bits (75), Expect = 0.34
Identities = 17/55 (30%), Positives = 31/55 (56%)
Frame = -2

Query: 213 LAKSSMLTLDGEMSMQRVKGKKSSVRRGGENAGSDSDE*RIGGRVRKLSVEICLI 49
++K +DG S ++ G+ S +R+ EN+ SD D ++ R+ KLS + +I
Sbjct: 323 VSKDETTIVDGAGSSDQIAGRVSQIRKELENSDSDYDREKLQERLAKLSGGVAVI 377


>sp|Q83NN0|CH60_TROW8 60 kDa chaperonin OS=Tropheryma whipplei
(strain TW08/27) GN=groL PE=3 SV=1
Length = 540

Score = 33.5 bits (75), Expect = 0.34
Identities = 17/55 (30%), Positives = 31/55 (56%)
Frame = -2

Query: 213 LAKSSMLTLDGEMSMQRVKGKKSSVRRGGENAGSDSDE*RIGGRVRKLSVEICLI 49
++K +DG S ++ G+ S +R+ EN+ SD D ++ R+ KLS + +I
Sbjct: 323 VSKDETTIVDGAGSSDQIAGRVSQIRKELENSDSDYDREKLQERLAKLSGGVAVI 377


>sp|Q8K581|TXND9_RAT Thioredoxin domain-containing protein 9
OS=Rattus norvegicus GN=Txndc9 PE=2 SV=2
Length = 226

Score = 33.1 bits (74), Expect = 0.45
Identities = 22/65 (33%), Positives = 32/65 (49%), Gaps = 11/65 (16%)
Frame = -2

Query: 261 ELGGTDEFTTEELEERLAKSSMLTLDGEM-----------SMQRVKGKKSSVRRGGENAG 115
+LG TD+FTTE LE RL S ++ G + K +K ++R G+
Sbjct: 163 DLGNTDDFTTETLEWRLGCSDVINYSGNLMEPPFQSQKKFGTNFTKLEKKTIR--GKKYD 220

Query: 114 SDSDE 100
SDSD+
Sbjct: 221 SDSDD 225


>sp|Q9CQ79|TXND9_MOUSE Thioredoxin domain-containing protein 9
OS=Mus musculus GN=Txndc9 PE=1 SV=1
Length = 226

Score = 33.1 bits (74), Expect = 0.45
Identities = 22/65 (33%), Positives = 32/65 (49%), Gaps = 11/65 (16%)
Frame = -2

Query: 261 ELGGTDEFTTEELEERLAKSSMLTLDGEM-----------SMQRVKGKKSSVRRGGENAG 115
+LG TD+FTTE LE RL S ++ G + K +K ++R G+
Sbjct: 163 DLGNTDDFTTETLEWRLGCSDVINYSGNLMEPPFQSQKKFGTNFTKLEKKTIR--GKKYD 220

Query: 114 SDSDE 100
SDSD+
Sbjct: 221 SDSDD 225


>sp|Q9K2U4|CH601_PROAC 60 kDa chaperonin 1 OS=Propionibacterium
acnes GN=groL1 PE=3 SV=1
Length = 544

Score = 32.3 bits (72), Expect = 0.77
Identities = 16/57 (28%), Positives = 31/57 (54%)
Frame = -2

Query: 213 LAKSSMLTLDGEMSMQRVKGKKSSVRRGGENAGSDSDE*RIGGRVRKLSVEICLIDV 43
+ K +DG +++ G+ S +R+ EN+ SD D ++ R+ KL+ + +I V
Sbjct: 323 VTKDEATIVDGAGDSEQIAGRVSQIRKEIENSDSDYDREKLQERLAKLAGGVAVIKV 379


tr_hit_id A9NNH2
Definition tr|A9NNH2|A9NNH2_PICSI Putative uncharacterized protein OS=Picea sitchensis
Align length 58
Score (bit) 62.0
E-value 1.0e-08
Report
BLASTX 2.2.19 [Nov-02-2008]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.

Query= BP918384|Adiantum capillus-veneris mRNA, clone:
YMU001_000112_H04.
(262 letters)

Database: uniprot_trembl.fasta
7,341,751 sequences; 2,391,615,440 total letters

Searching..................................................done



Score E
Sequences producing significant alignments: (bits) Value

tr|A9NNH2|A9NNH2_PICSI Putative uncharacterized protein OS=Picea... 62 1e-08
tr|A7QW72|A7QW72_VITVI Chromosome chr3 scaffold_199, whole genom... 56 8e-07
tr|A5BWR2|A5BWR2_VITVI Putative uncharacterized protein OS=Vitis... 56 8e-07
tr|A9PC45|A9PC45_POPTR Putative uncharacterized protein OS=Popul... 54 5e-06
tr|B7FMC0|B7FMC0_MEDTR Putative uncharacterized protein OS=Medic... 52 1e-05
tr|Q6YW09|Q6YW09_ORYSJ Os08g0250700 protein OS=Oryza sativa subs... 49 1e-04
tr|A3BR71|A3BR71_ORYSJ Putative uncharacterized protein OS=Oryza... 49 1e-04
tr|A2YT09|A2YT09_ORYSI Putative uncharacterized protein OS=Oryza... 49 1e-04
tr|Q541V3|Q541V3_ARATH Putative ATP binding protein OS=Arabidops... 49 1e-04
tr|A9SSS0|A9SSS0_PHYPA Predicted protein OS=Physcomitrella paten... 46 8e-04
tr|Q9LSU4|Q9LSU4_ARATH Genomic DNA, chromosome 3, P1 clone: MWL2... 45 0.001
tr|Q8L9H7|Q8L9H7_ARATH Putative ATP binding protein OS=Arabidops... 45 0.001
tr|Q8GWR9|Q8GWR9_ARATH Putative uncharacterized protein At3g2558... 45 0.002
tr|A8HMA7|A8HMA7_CHLRE Thioredoxin-like ATP binding protein 2 OS... 40 0.076
tr|A8XW55|A8XW55_CAEBR CBR-TAG-170 protein OS=Caenorhabditis bri... 40 0.076
tr|A8Q8L6|A8Q8L6_BRUMA Apacd-prov protein, putative OS=Brugia ma... 38 0.22
tr|B6KXH8|B6KXH8_BRAFL Putative uncharacterized protein OS=Branc... 37 0.49
tr|A8T499|A8T499_9VIBR Predicted transcriptional regulator OS=Vi... 36 1.1
tr|Q53HG4|Q53HG4_HUMAN ATP binding protein associated with cell ... 36 1.1
tr|B5DGA5|B5DGA5_SALSA ATP binding protein associated with cell ... 35 1.4
tr|B3TP06|B3TP06_VIBAN GroEL OS=Vibrio anguillarum PE=4 SV=1 35 1.9
tr|Q5R6G6|Q5R6G6_PONAB Putative uncharacterized protein DKFZp468... 35 1.9
tr|B3RW97|B3RW97_TRIAD Putative uncharacterized protein OS=Trich... 35 1.9
tr|B2R9G8|B2R9G8_HUMAN cDNA, FLJ94384, Homo sapiens ATP binding ... 35 1.9
tr|B7VHQ8|B7VHQ8_VIBSP 60 kDa chaperonin (Protein Cpn60) (GroEL ... 35 2.4
tr|B5DLY5|B5DLY5_DROPS GA23727 OS=Drosophila pseudoobscura pseud... 35 2.4
tr|A3UR04|A3UR04_VIBSP 60 kDa chaperonin OS=Vibrio splendidus 12... 34 3.2
tr|B4GVP2|B4GVP2_DROPE GL14692 OS=Drosophila persimilis GN=GL146... 34 3.2
tr|Q7ZVX9|Q7ZVX9_DANRE Thioredoxin domain containing 9 OS=Danio ... 34 4.2
tr|B7PPT4|B7PPT4_IXOSC Putative uncharacterized protein OS=Ixode... 34 4.2

>tr|A9NNH2|A9NNH2_PICSI Putative uncharacterized protein OS=Picea
sitchensis PE=2 SV=1
Length = 217

Score = 62.0 bits (149), Expect = 1e-08
Identities = 32/58 (55%), Positives = 40/58 (68%), Gaps = 4/58 (6%)
Frame = -2

Query: 261 ELGGTDEFTTEELEERLAKSSMLTLDGEMSMQRVKGKKS----SVRRGGENAGSDSDE 100
ELGGTDEF+TEELEERLAKS ++ +GE S R + K S S+R+ G SDSD+
Sbjct: 160 ELGGTDEFSTEELEERLAKSKIIVFEGESSASRFRSKVSSNNRSIRQSGNGDDSDSDD 217


>tr|A7QW72|A7QW72_VITVI Chromosome chr3 scaffold_199, whole genome
shotgun sequence OS=Vitis vinifera GN=GSVIVT00007723001
PE=4 SV=1
Length = 238

Score = 56.2 bits (134), Expect = 8e-07
Identities = 29/55 (52%), Positives = 37/55 (67%), Gaps = 2/55 (3%)
Frame = -2

Query: 261 ELGGTDEFTTEELEERLAKSSMLTLDGEMSMQRVKGKKS--SVRRGGENAGSDSD 103
ELGGTDEF+TEELEERLAK+ ++ +GE S+ K SVR+ + SDSD
Sbjct: 184 ELGGTDEFSTEELEERLAKAQVIIFEGESSLHASKSSSQPRSVRQSSNSYSSDSD 238


>tr|A5BWR2|A5BWR2_VITVI Putative uncharacterized protein OS=Vitis
vinifera GN=VITISV_013928 PE=4 SV=1
Length = 207

Score = 56.2 bits (134), Expect = 8e-07
Identities = 29/55 (52%), Positives = 37/55 (67%), Gaps = 2/55 (3%)
Frame = -2

Query: 261 ELGGTDEFTTEELEERLAKSSMLTLDGEMSMQRVKGKKS--SVRRGGENAGSDSD 103
ELGGTDEF+TEELEERLAK+ ++ +GE S+ K SVR+ + SDSD
Sbjct: 153 ELGGTDEFSTEELEERLAKAQVIIFEGESSLHASKSSSQPRSVRQSSNSYSSDSD 207


>tr|A9PC45|A9PC45_POPTR Putative uncharacterized protein OS=Populus
trichocarpa PE=2 SV=1
Length = 213

Score = 53.5 bits (127), Expect = 5e-06
Identities = 28/56 (50%), Positives = 37/56 (66%), Gaps = 3/56 (5%)
Frame = -2

Query: 261 ELGGTDEFTTEELEERLAKSSMLTLDGEMSMQRVKGK---KSSVRRGGENAGSDSD 103
ELGGTDEF TE+LEERLAK+ ++ +GE S+ K + SVR+ + SDSD
Sbjct: 158 ELGGTDEFNTEDLEERLAKAQVIFFEGESSLNSSKSSAQTRRSVRQSESHDSSDSD 213


>tr|B7FMC0|B7FMC0_MEDTR Putative uncharacterized protein OS=Medicago
truncatula PE=2 SV=1
Length = 213

Score = 52.0 bits (123), Expect = 1e-05
Identities = 28/56 (50%), Positives = 38/56 (67%), Gaps = 3/56 (5%)
Frame = -2

Query: 261 ELGGTDEFTTEELEERLAKSSMLTLDGEMSMQRVKG---KKSSVRRGGENAGSDSD 103
ELGGTD+F+TE LEERLAK+ ++ L+GE S+ R + K SVR+ SDS+
Sbjct: 158 ELGGTDDFSTEVLEERLAKAQVIFLEGESSIHRARSGAQTKRSVRQSTTADSSDSE 213


>tr|Q6YW09|Q6YW09_ORYSJ Os08g0250700 protein OS=Oryza sativa subsp.
japonica GN=OSJNBa0012K14.33 PE=2 SV=1
Length = 210

Score = 49.3 bits (116), Expect = 1e-04
Identities = 27/54 (50%), Positives = 35/54 (64%), Gaps = 1/54 (1%)
Frame = -2

Query: 261 ELGGTDEFTTEELEERLAKSSMLTLDGEMSMQRVK-GKKSSVRRGGENAGSDSD 103
ELGG D+F+TE+LEERLAK+ ++ LDGE K K SVR+ SDS+
Sbjct: 157 ELGGKDDFSTEDLEERLAKAQVIFLDGEGPAHASKQATKRSVRQSDTGNSSDSE 210


>tr|A3BR71|A3BR71_ORYSJ Putative uncharacterized protein OS=Oryza
sativa subsp. japonica GN=OsJ_025543 PE=4 SV=1
Length = 112

Score = 49.3 bits (116), Expect = 1e-04
Identities = 27/54 (50%), Positives = 35/54 (64%), Gaps = 1/54 (1%)
Frame = -2

Query: 261 ELGGTDEFTTEELEERLAKSSMLTLDGEMSMQRVK-GKKSSVRRGGENAGSDSD 103
ELGG D+F+TE+LEERLAK+ ++ LDGE K K SVR+ SDS+
Sbjct: 59 ELGGKDDFSTEDLEERLAKAQVIFLDGEGPAHASKQATKRSVRQSDTGNSSDSE 112


>tr|A2YT09|A2YT09_ORYSI Putative uncharacterized protein OS=Oryza
sativa subsp. indica GN=OsI_28462 PE=4 SV=1
Length = 190

Score = 49.3 bits (116), Expect = 1e-04
Identities = 27/54 (50%), Positives = 35/54 (64%), Gaps = 1/54 (1%)
Frame = -2

Query: 261 ELGGTDEFTTEELEERLAKSSMLTLDGEMSMQRVK-GKKSSVRRGGENAGSDSD 103
ELGG D+F+TE+LEERLAK+ ++ LDGE K K SVR+ SDS+
Sbjct: 137 ELGGKDDFSTEDLEERLAKAQVIFLDGEGPAHASKQATKRSVRQSDTGNSSDSE 190


>tr|Q541V3|Q541V3_ARATH Putative ATP binding protein OS=Arabidopsis
thaliana GN=At2g18990 PE=2 SV=1
Length = 211

Score = 48.9 bits (115), Expect = 1e-04
Identities = 24/53 (45%), Positives = 35/53 (66%)
Frame = -2

Query: 261 ELGGTDEFTTEELEERLAKSSMLTLDGEMSMQRVKGKKSSVRRGGENAGSDSD 103
ELGG D+F+TE+LEER+A++ ++ DGE S + K R ++A SDSD
Sbjct: 157 ELGGKDDFSTEDLEERIARAQVIHYDGESSSLKPKSTTQVRRNVRQSARSDSD 209


>tr|A9SSS0|A9SSS0_PHYPA Predicted protein OS=Physcomitrella patens
subsp. patens GN=PHYPADRAFT_215344 PE=4 SV=1
Length = 217

Score = 46.2 bits (108), Expect = 8e-04
Identities = 25/56 (44%), Positives = 39/56 (69%), Gaps = 2/56 (3%)
Frame = -2

Query: 261 ELGGTDEFTTEELEERLAKSSML-TLDGEMSMQRVKGKKSSVRRGGEN-AGSDSDE 100
ELGGTD+F+TE+LE+RLAKS ++ +G ++ K SVR+G + +G +SD+
Sbjct: 160 ELGGTDDFSTEDLEDRLAKSGVIYGAEGRVARPVASQSKRSVRQGTSSYSGDNSDD 215