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NBDC - LSDB Archive
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AcEST | BlastX Result : Swiss-Prot | BlastX Result : TrEMBL | AcESTcontig | About Libraries
BP918387
Clone id YMU001_000112_H07
Library
Length 353
Definition Adiantum capillus-veneris mRNA. clone: YMU001_000112_H07.
Accession
Tissue type prothallium
Developmental stage -
Contig ID -
Sequence 
TCAGAGTGGTTTGGTTCAATTTGAAAAGTGGAATCTGCTTGGGGACTCTGCTTAGATGGC
GATTGGGACAATGAACAAGGTGTAATCAAGGACTGGATGAGACTCCCAATGCAATACTGT
CTATGTGAAGAATTGGCAGAGTTTATGTCAAAGAACTTCTGATTCCAATAGCAGCAAAAA
CCTTTGGTGCCATTAAAATTTCAGCTTTGCTGCAGGAACCTTAATCTACTAATACCCTTC
TTTATCTGGAGTCAAAATTGCCCTTTCTTTGTATTTGCTCGAACTTTGTACTGCTCAAAA
ATTATCCTCTCTTTGTATCTGCTAGCACTTTGTACCTGCTCACACTCGCTACG
■■Homology search results ■■ -
sp_hit_id P09976
Definition sp|P09976|YCF2_TOBAC Protein ycf2 OS=Nicotiana tabacum
Align length 49
Score (bit) 29.6
E-value 4.8
Report 
BLASTX 2.2.19 [Nov-02-2008]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= BP918387|Adiantum capillus-veneris mRNA, clone:
YMU001_000112_H07.
         (353 letters)

Database: uniprot_sprot.fasta 
           412,525 sequences; 148,809,765 total letters

Searching..................................................done



                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

sp|P09976|YCF2_TOBAC Protein ycf2 OS=Nicotiana tabacum GN=ycf2-A...    30   4.8  
sp|Q27RY7|YCF2_SOLTU Protein ycf2 OS=Solanum tuberosum GN=ycf2-A...    30   4.8  
sp|P61242|YCF2_SOLLC Protein ycf2 OS=Solanum lycopersicum GN=ycf...    30   4.8  
sp|Q2MIC5|YCF2_SOLBU Protein ycf2 OS=Solanum bulbocastanum GN=yc...    30   4.8  
sp|Q3C1N4|YCF2_NICSY Protein ycf2 OS=Nicotiana sylvestris GN=ycf...    30   4.8  
sp|Q8S8U1|YCF2B_ATRBE Protein ycf2 B OS=Atropa belladonna GN=ycf...    29   6.3  
sp|Q8S8V2|YCF2A_ATRBE Protein ycf2 A OS=Atropa belladonna GN=ycf...    29   6.3  
sp|Q32LB5|GPRL1_BOVIN GLIPR1-like protein 1 OS=Bos taurus GN=GLI...    29   8.2  

>sp|P09976|YCF2_TOBAC Protein ycf2 OS=Nicotiana tabacum GN=ycf2-A PE=3
            SV=2
          Length = 2280

 Score = 29.6 bits (65), Expect = 4.8
 Identities = 16/49 (32%), Positives = 23/49 (46%), Gaps = 1/49 (2%)
 Frame = -1

Query: 230  SRLRFLQQS*NFNGTKGFCCYWNQKF-FDINSANSSHRQYCIGSLIQSL 87
            +RLRFL      N    FC YWN +F F +  A  ++  +  G  +  L
Sbjct: 1019 NRLRFL------NNPHHFCFYWNTRFPFSVEKARINNSDFTYGQFLNIL 1061


>sp|Q27RY7|YCF2_SOLTU Protein ycf2 OS=Solanum tuberosum GN=ycf2-A PE=3
            SV=1
          Length = 2278

 Score = 29.6 bits (65), Expect = 4.8
 Identities = 16/49 (32%), Positives = 23/49 (46%), Gaps = 1/49 (2%)
 Frame = -1

Query: 230  SRLRFLQQS*NFNGTKGFCCYWNQKF-FDINSANSSHRQYCIGSLIQSL 87
            +RLRFL      N    FC YWN +F F +  A  ++  +  G  +  L
Sbjct: 1020 NRLRFL------NNPHHFCFYWNTRFPFSVEKARINNSDFTYGQFLNIL 1062


>sp|P61242|YCF2_SOLLC Protein ycf2 OS=Solanum lycopersicum GN=ycf2-A
            PE=2 SV=2
          Length = 2278

 Score = 29.6 bits (65), Expect = 4.8
 Identities = 16/49 (32%), Positives = 23/49 (46%), Gaps = 1/49 (2%)
 Frame = -1

Query: 230  SRLRFLQQS*NFNGTKGFCCYWNQKF-FDINSANSSHRQYCIGSLIQSL 87
            +RLRFL      N    FC YWN +F F +  A  ++  +  G  +  L
Sbjct: 1020 NRLRFL------NNPHHFCFYWNTRFPFSVEKARINNSDFTYGQFLNIL 1062


>sp|Q2MIC5|YCF2_SOLBU Protein ycf2 OS=Solanum bulbocastanum GN=ycf2-A
            PE=3 SV=1
          Length = 2278

 Score = 29.6 bits (65), Expect = 4.8
 Identities = 16/49 (32%), Positives = 23/49 (46%), Gaps = 1/49 (2%)
 Frame = -1

Query: 230  SRLRFLQQS*NFNGTKGFCCYWNQKF-FDINSANSSHRQYCIGSLIQSL 87
            +RLRFL      N    FC YWN +F F +  A  ++  +  G  +  L
Sbjct: 1020 NRLRFL------NNPHHFCFYWNTRFPFSVEKARINNSDFTYGQFLNIL 1062


>sp|Q3C1N4|YCF2_NICSY Protein ycf2 OS=Nicotiana sylvestris GN=ycf2-A
            PE=3 SV=1
          Length = 2280

 Score = 29.6 bits (65), Expect = 4.8
 Identities = 16/49 (32%), Positives = 23/49 (46%), Gaps = 1/49 (2%)
 Frame = -1

Query: 230  SRLRFLQQS*NFNGTKGFCCYWNQKF-FDINSANSSHRQYCIGSLIQSL 87
            +RLRFL      N    FC YWN +F F +  A  ++  +  G  +  L
Sbjct: 1019 NRLRFL------NNPHHFCFYWNTRFPFSVEKARINNSDFTYGQFLNIL 1061


>sp|Q8S8U1|YCF2B_ATRBE Protein ycf2 B OS=Atropa belladonna GN=ycf2-B
            PE=3 SV=1
          Length = 2291

 Score = 29.3 bits (64), Expect = 6.3
 Identities = 16/49 (32%), Positives = 23/49 (46%), Gaps = 1/49 (2%)
 Frame = -1

Query: 230  SRLRFLQQS*NFNGTKGFCCYWNQKF-FDINSANSSHRQYCIGSLIQSL 87
            +RLRFL      N    FC YWN +F F +  A  ++  +  G  +  L
Sbjct: 1027 NRLRFL------NNPHHFCFYWNTRFPFSVEKARINNSYFTYGQFLNIL 1069


>sp|Q8S8V2|YCF2A_ATRBE Protein ycf2 A OS=Atropa belladonna GN=ycf2-A
            PE=3 SV=1
          Length = 2291

 Score = 29.3 bits (64), Expect = 6.3
 Identities = 16/49 (32%), Positives = 23/49 (46%), Gaps = 1/49 (2%)
 Frame = -1

Query: 230  SRLRFLQQS*NFNGTKGFCCYWNQKF-FDINSANSSHRQYCIGSLIQSL 87
            +RLRFL      N    FC YWN +F F +  A  ++  +  G  +  L
Sbjct: 1027 NRLRFL------NNPHHFCFYWNTRFPFSVEKARINNSYFTYGQFLNIL 1069


>sp|Q32LB5|GPRL1_BOVIN GLIPR1-like protein 1 OS=Bos taurus
           GN=GLIPR1L1 PE=2 SV=1
          Length = 241

 Score = 28.9 bits (63), Expect = 8.2
 Identities = 14/47 (29%), Positives = 24/47 (51%)
 Frame = +2

Query: 134 WQSLCQRTSDSNSSKNLWCH*NFSFAAGTLIY*YPSLSGVKIALSLY 274
           W   C+   +S SSK+  CH  F +A   L     ++S  K A++++
Sbjct: 72  WAKKCKFIHNSCSSKSFKCHPTFQYAGENLWLGPLTISAAKFAINMW 118
tr_hit_id B4B5I6
Definition tr|B4B5I6|B4B5I6_9CHRO Amino acid adenylation domain protein OS=Cyanothece sp. PCC 7822
Align length 75
Score (bit) 34.7
E-value 2.4
Report 
BLASTX 2.2.19 [Nov-02-2008]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= BP918387|Adiantum capillus-veneris mRNA, clone:
YMU001_000112_H07.
         (353 letters)

Database: uniprot_trembl.fasta 
           7,341,751 sequences; 2,391,615,440 total letters

Searching..................................................done



                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

tr|B4B5I6|B4B5I6_9CHRO Amino acid adenylation domain protein OS=...    35   2.4  
tr|A4VE00|A4VE00_TETTH Putative uncharacterized protein OS=Tetra...    35   2.4  
tr|B7KM97|B7KM97_9CHRO Amino acid adenylation domain protein OS=...    34   3.1  
tr|A5VC11|A5VC11_SPHWW KAP P-loop domain protein OS=Sphingomonas...    33   9.1  

>tr|B4B5I6|B4B5I6_9CHRO Amino acid adenylation domain protein
           OS=Cyanothece sp. PCC 7822 GN=Cyan7822DRAFT_3893 PE=4
           SV=1
          Length = 2164

 Score = 34.7 bits (78), Expect = 2.4
 Identities = 24/75 (32%), Positives = 37/75 (49%)
 Frame = +3

Query: 93  LDETPNAILSM*RIGRVYVKELLIPIAAKTFGAIKISALLQEP*STNTLLYLESKLPFLC 272
           L E  N +    ++ +  V +    +  K+  A  +  L +E  +TN   YL +KLP   
Sbjct: 423 LGEIENFLRQHPQVAQTLVIDREDSLGNKSLVAYIVPYLAEENLTTNLEKYLTNKLPSYM 482

Query: 273 ICSNFVLLKNYPLFV 317
           I  NFV+L+N PL V
Sbjct: 483 IPRNFVVLENLPLTV 497


>tr|A4VE00|A4VE00_TETTH Putative uncharacterized protein
           OS=Tetrahymena thermophila SB210 GN=TTHERM_00516349 PE=4
           SV=1
          Length = 330

 Score = 34.7 bits (78), Expect = 2.4
 Identities = 21/51 (41%), Positives = 28/51 (54%), Gaps = 2/51 (3%)
 Frame = +1

Query: 199 FQLCCRNLNLLIPFFIWSQN--CPFFVFARTLYCSKIILSLYLLALCTCSH 345
           FQ+C  NL  ++  FIW       +F F  TLYCS  I S+YL  + + SH
Sbjct: 135 FQVCILNLITIVLDFIWKHLILANYFNFL-TLYCSLQIFSIYLSQIDSLSH 184


>tr|B7KM97|B7KM97_9CHRO Amino acid adenylation domain protein
           OS=Cyanothece sp. PCC 7424 GN=PCC7424_5870 PE=4 SV=1
          Length = 2164

 Score = 34.3 bits (77), Expect = 3.1
 Identities = 21/75 (28%), Positives = 39/75 (52%)
 Frame = +3

Query: 93  LDETPNAILSM*RIGRVYVKELLIPIAAKTFGAIKISALLQEP*STNTLLYLESKLPFLC 272
           L E    +L   ++ +  V +    +  K+  A  ++ L ++  +TN   YL++K+P   
Sbjct: 423 LGEIETVLLQHPQVSQTIVIDREDSLGNKSLVAYIVAYLAEKNLTTNLQDYLKNKIPSYM 482

Query: 273 ICSNFVLLKNYPLFV 317
           I  NFV+L+N PL +
Sbjct: 483 IPGNFVVLENLPLTI 497


>tr|A5VC11|A5VC11_SPHWW KAP P-loop domain protein OS=Sphingomonas
           wittichii (strain RW1 / DSM 6014 / JCM 10273)
           GN=Swit_3481 PE=4 SV=1
          Length = 464

 Score = 32.7 bits (73), Expect = 9.1
 Identities = 17/45 (37%), Positives = 26/45 (57%)
 Frame = +1

Query: 25  KVESAWGLCLDGDWDNEQGVIKDWMRLPMQYCLCEELAEFMSKNF 159
           + E A+     GD D+E G  + W R   +YCL +E++E M +NF
Sbjct: 387 EAEKAFAFEYKGDGDSELGYTQ-WERRWWEYCLNKEISEEMEQNF 430