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AcEST | BlastX Result : Swiss-Prot | BlastX Result : TrEMBL | AcESTcontig | About Libraries
NBDC - LSDB Archive
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AcEST | BlastX Result : Swiss-Prot | BlastX Result : TrEMBL | AcESTcontig | About Libraries
BP918394
Clone id YMU001_000113_A04
Library
Length 469
Definition Adiantum capillus-veneris mRNA. clone: YMU001_000113_A04.
Accession
Tissue type prothallium
Developmental stage -
Contig ID
Sequence 
CAGAGAAGAAGTAATGGGAGGGATCGAGCTTTACTGCTGCTTGATCCTTTGTGAGAGGCC
ATTGAAGCTCCTTGCCTACACGTGCAAAGACAGCAATGCCGTTGCCATCCTGGTTAAGAC
GAACAATAGAGAAGGGGCCACTTGCAAGGTGAGGGCTAGCCTCGCGATCGACAAGGTGAG
CGACGGCGTCAGGCACAGAGACTAACAGAGTCTCGGATGCCTCAACAGGGGAGACCTCGA
TCTTCTTGGAAAGATCTGCAGTGATGGCATCTATGGAGACGGGGTCTGGGTAGCGCAGGC
GCGACTGCTGATCAGAAGAGAGAGGCGTTTCGGCCGGGGCATTTAAAGAAGGGTAATGTA
TTTGAGGGTCCATAGCCTACAACTTTAACCCTAACAAACAGCAAAGCAGACAAGAAAGCA
ACACTTACTCGACGACGAAGAAGGTCACTCAGAAGTATGAGAAGCAAGC
■■Homology search results ■■ -
sp_hit_id Q6BXI1
Definition sp|Q6BXI1|SEC16_DEBHA COPII coat assembly protein SEC16 OS=Debaryomyces hansenii
Align length 45
Score (bit) 31.6
E-value 1.8
Report 
BLASTX 2.2.19 [Nov-02-2008]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= BP918394|Adiantum capillus-veneris mRNA, clone:
YMU001_000113_A04.
         (469 letters)

Database: uniprot_sprot.fasta 
           412,525 sequences; 148,809,765 total letters

Searching..................................................done



                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

sp|Q6BXI1|SEC16_DEBHA COPII coat assembly protein SEC16 OS=Debar...    32   1.8  
sp|Q2R0Q1|U2A2A_ORYSJ Splicing factor U2af large subunit A OS=Or...    30   4.1  
sp|Q5QVT1|TRMA_IDILO tRNA (uracil-5-)-methyltransferase OS=Idiom...    30   6.9  
sp|P11838|CARP_CRYPA Endothiapepsin OS=Cryphonectria parasitica ...    29   8.9  
sp|Q65W81|RIBB_MANSM 3,4-dihydroxy-2-butanone 4-phosphate syntha...    29   9.1  
sp|P07987|GUX2_TRIRE Exoglucanase 2 OS=Trichoderma reesei GN=cbh...    29   9.1  

>sp|Q6BXI1|SEC16_DEBHA COPII coat assembly protein SEC16
           OS=Debaryomyces hansenii GN=SEC16 PE=3 SV=2
          Length = 2130

 Score = 31.6 bits (70), Expect = 1.8
 Identities = 15/45 (33%), Positives = 26/45 (57%)
 Frame = -1

Query: 376 AMDPQIHYPSLNAPAETPLSSDQQSRLRYPDPVSIDAITADLSKK 242
           +M P++H PS+NA    P+ +++Q+ +    P+S    T  L KK
Sbjct: 620 SMPPKLHSPSMNAVGSVPVPNEKQATM--SQPLSAAVSTQGLQKK 662


>sp|Q2R0Q1|U2A2A_ORYSJ Splicing factor U2af large subunit A OS=Oryza
           sativa subsp. japonica GN=U2AF65A PE=2 SV=2
          Length = 574

 Score = 30.4 bits (67), Expect = 4.1
 Identities = 18/43 (41%), Positives = 22/43 (51%)
 Frame = +1

Query: 118 DEQ*RRGHLQGEG*PRDRQGERRRQAQRLTESRMPQQGRPRSS 246
           D   RRGH       RDR G RR +++    SR P +GR R S
Sbjct: 124 DRDRRRGHDSERRRDRDRDGHRRHRSR----SRSPSKGRDRRS 162


>sp|Q5QVT1|TRMA_IDILO tRNA (uracil-5-)-methyltransferase
           OS=Idiomarina loihiensis GN=trmA PE=3 SV=2
          Length = 366

 Score = 29.6 bits (65), Expect = 6.9
 Identities = 13/22 (59%), Positives = 15/22 (68%)
 Frame = +1

Query: 307 ADQKREAFRPGHLKKGNVFEGP 372
           AD+ RE FRP HL +  VFE P
Sbjct: 19  ADRVREMFRPFHLNEVEVFESP 40


>sp|P11838|CARP_CRYPA Endothiapepsin OS=Cryphonectria parasitica
           GN=EAPA PE=1 SV=2
          Length = 419

 Score = 29.3 bits (64), Expect = 8.9
 Identities = 20/70 (28%), Positives = 31/70 (44%)
 Frame = +3

Query: 78  TRAKTAMPLPSWLRRTIEKGPLAR*GLASRSTR*ATASGTETNRVSDASTGETSIFLERS 257
           T  K  +P+P+WL   ++       GLA RST   +A+ T  + + DA      I     
Sbjct: 63  TYLKYGVPIPAWLEDAVQNSTS---GLAERST--GSATTTPIDSLDDAYITPVQIGTPAQ 117

Query: 258 AVMASMETGS 287
            +    +TGS
Sbjct: 118 TLNLDFDTGS 127


>sp|Q65W81|RIBB_MANSM 3,4-dihydroxy-2-butanone 4-phosphate synthase
           OS=Mannheimia succiniciproducens (strain MBEL55E)
           GN=ribB PE=3 SV=1
          Length = 214

 Score = 29.3 bits (64), Expect = 9.1
 Identities = 19/67 (28%), Positives = 34/67 (50%)
 Frame = -1

Query: 337 PAETPLSSDQQSRLRYPDPVSIDAITADLSKKIEVSPVEASETLLVSVPDAVAHLVDREA 158
           PAET  +      +RY   +    IT +L +K+E+ P+ A+ T +    +  A  V  EA
Sbjct: 46  PAETITTEQMAKLIRYGSGIVCLCITDELCQKLELPPMVAANTSV----NKTAFTVTIEA 101

Query: 157 SPHLASG 137
           +  +++G
Sbjct: 102 AEGVSTG 108


>sp|P07987|GUX2_TRIRE Exoglucanase 2 OS=Trichoderma reesei GN=cbh2
           PE=1 SV=1
          Length = 471

 Score = 29.3 bits (64), Expect = 9.1
 Identities = 20/67 (29%), Positives = 32/67 (47%), Gaps = 8/67 (11%)
 Frame = -1

Query: 211 TLLVSVPDAVAHLVDREASPHLASGP--------FSIVRLNQDGNGIAVFARVGKELQWP 56
           TLLV  PD++A+LV    +P  A+          +++ +LN     + + A     L WP
Sbjct: 238 TLLVIEPDSLANLVTNLGTPKCANAQSAYLECINYAVTQLNLPNVAMYLDAGHAGWLGWP 297

Query: 55  LTKDQAA 35
             +D AA
Sbjct: 298 ANQDPAA 304
tr_hit_id A9TKT2
Definition tr|A9TKT2|A9TKT2_PHYPA Predicted protein OS=Physcomitrella patens subsp. patens
Align length 81
Score (bit) 102.0
E-value 7.0e-21
Report 
BLASTX 2.2.19 [Nov-02-2008]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= BP918394|Adiantum capillus-veneris mRNA, clone:
YMU001_000113_A04.
         (469 letters)

Database: uniprot_trembl.fasta 
           7,341,751 sequences; 2,391,615,440 total letters

Searching..................................................done



                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

tr|A9TKT2|A9TKT2_PHYPA Predicted protein OS=Physcomitrella paten...   102   7e-21
tr|B5TV63|B5TV63_CAMSI Senescence-related protein OS=Camellia si...    94   4e-18
tr|A9RD05|A9RD05_PHYPA Predicted protein (Fragment) OS=Physcomit...    93   6e-18
tr|A9RAW2|A9RAW2_PHYPA Predicted protein (Fragment) OS=Physcomit...    92   1e-17
tr|A7QDV5|A7QDV5_VITVI Chromosome chr4 scaffold_83, whole genome...    92   1e-17
tr|A9U3E2|A9U3E2_PHYPA Predicted protein OS=Physcomitrella paten...    92   2e-17
tr|A7P8A4|A7P8A4_VITVI Chromosome chr3 scaffold_8, whole genome ...    90   6e-17
tr|O65635|O65635_ARATH Putative uncharacterized protein T19K4.11...    89   8e-17
tr|A9RSE9|A9RSE9_PHYPA Predicted protein (Fragment) OS=Physcomit...    88   2e-16
tr|Q9SD22|Q9SD22_ARATH Putative uncharacterized protein F24M12.2...    86   7e-16
tr|Q94II1|Q94II1_ARATH ERD7 protein (Fragment) OS=Arabidopsis th...    78   2e-13
tr|Q8LA30|Q8LA30_ARATH Putative senescence-associated protein 12...    78   2e-13
tr|O48832|O48832_ARATH Putative senescence-related protein (Prob...    78   2e-13
tr|B8LK66|B8LK66_PICSI Putative uncharacterized protein OS=Picea...    71   2e-11
tr|A7PEH2|A7PEH2_VITVI Chromosome chr11 scaffold_13, whole genom...    70   7e-11
tr|B8A0G0|B8A0G0_MAIZE Putative uncharacterized protein OS=Zea m...    69   1e-10
tr|B6UCD3|B6UCD3_MAIZE Senescence-associated protein 12 OS=Zea m...    69   1e-10
tr|B4F8T3|B4F8T3_MAIZE Putative uncharacterized protein OS=Zea m...    69   2e-10
tr|Q10P99|Q10P99_ORYSJ Os03g0241900 protein OS=Oryza sativa subs...    68   2e-10
tr|A9RJ80|A9RJ80_PHYPA Predicted protein OS=Physcomitrella paten...    68   2e-10
tr|A2XEE9|A2XEE9_ORYSI Putative uncharacterized protein OS=Oryza...    68   2e-10
tr|Q8SB36|Q8SB36_ORYSA Putative senescence-associated protein OS...    68   3e-10
tr|Q5Z9N6|Q5Z9N6_ORYSJ Os06g0717100 protein OS=Oryza sativa subs...    68   3e-10
tr|A9NV63|A9NV63_PICSI Putative uncharacterized protein OS=Picea...    68   3e-10
tr|A2YH10|A2YH10_ORYSI Putative uncharacterized protein OS=Oryza...    68   3e-10
tr|A9U2N3|A9U2N3_PHYPA Predicted protein OS=Physcomitrella paten...    67   3e-10
tr|B8A8R5|B8A8R5_ORYSI Putative uncharacterized protein OS=Oryza...    67   6e-10
tr|Q5JM97|Q5JM97_ORYSJ cDNA clone:001-022-B06, full insert seque...    66   8e-10
tr|A2ZXD7|A2ZXD7_ORYSJ Putative uncharacterized protein OS=Oryza...    66   8e-10
tr|Q9LVE6|Q9LVE6_ARATH Similarity to senescence-associated prote...    63   8e-09

>tr|A9TKT2|A9TKT2_PHYPA Predicted protein OS=Physcomitrella patens
           subsp. patens GN=PHYPADRAFT_196034 PE=4 SV=1
          Length = 408

 Score =  102 bits (255), Expect = 7e-21
 Identities = 46/81 (56%), Positives = 60/81 (74%)
 Frame = -1

Query: 244 KIEVSPVEASETLLVSVPDAVAHLVDREASPHLASGPFSIVRLNQDGNGIAVFARVGKEL 65
           K + +P++  E  LV+VPDA+ HLVD + SPHLA+  FS+VR+ Q GNGI V  RVG++L
Sbjct: 9   KDDDTPLDPREECLVTVPDAIVHLVDDQQSPHLATAHFSVVRITQKGNGIVVLVRVGEDL 68

Query: 64  QWPLTKDQAAVKLDPSHYFFS 2
            WPL KD   VKLDP+HYFF+
Sbjct: 69  HWPLMKDMPTVKLDPTHYFFT 89


>tr|B5TV63|B5TV63_CAMSI Senescence-related protein OS=Camellia
           sinensis PE=2 SV=1
          Length = 448

 Score = 93.6 bits (231), Expect = 4e-18
 Identities = 43/77 (55%), Positives = 57/77 (74%)
 Frame = -1

Query: 232 SPVEASETLLVSVPDAVAHLVDREASPHLASGPFSIVRLNQDGNGIAVFARVGKELQWPL 53
           S +E+SE +L+ VP  + HL+D+E S  LA G  +IVRL Q GN +AV AR+  ++QWPL
Sbjct: 60  SQLESSEEILIRVPGTIVHLIDKEQSVELACGELTIVRLLQGGNVVAVLARIDDQIQWPL 119

Query: 52  TKDQAAVKLDPSHYFFS 2
            KD+AAVKLD SHYFF+
Sbjct: 120 AKDEAAVKLDESHYFFT 136


>tr|A9RD05|A9RD05_PHYPA Predicted protein (Fragment)
           OS=Physcomitrella patens subsp. patens
           GN=PHYPADRAFT_23114 PE=4 SV=1
          Length = 365

 Score = 93.2 bits (230), Expect = 6e-18
 Identities = 45/74 (60%), Positives = 53/74 (71%)
 Frame = -1

Query: 223 EASETLLVSVPDAVAHLVDREASPHLASGPFSIVRLNQDGNGIAVFARVGKELQWPLTKD 44
           E SE +LV V  AV HLVD E SP LA G FS+V + Q+GNGI  F +VG  L+WPLTKD
Sbjct: 1   ETSEEVLVRVRGAVVHLVDDEESPLLAEGSFSVVLIEQEGNGIVAFVKVGDNLRWPLTKD 60

Query: 43  QAAVKLDPSHYFFS 2
             AVKLD +HYFF+
Sbjct: 61  ALAVKLDSTHYFFT 74


>tr|A9RAW2|A9RAW2_PHYPA Predicted protein (Fragment)
           OS=Physcomitrella patens subsp. patens
           GN=PHYPADRAFT_23136 PE=4 SV=1
          Length = 366

 Score = 92.4 bits (228), Expect = 1e-17
 Identities = 44/74 (59%), Positives = 54/74 (72%)
 Frame = -1

Query: 223 EASETLLVSVPDAVAHLVDREASPHLASGPFSIVRLNQDGNGIAVFARVGKELQWPLTKD 44
           EASE +LV +  AV HLVD + SP L  G FSIV + Q GNG+  F RVG +L+WPLTKD
Sbjct: 1   EASEEVLVRIRGAVVHLVDDQKSPLLGDGDFSIVLIEQAGNGLVTFVRVGDKLRWPLTKD 60

Query: 43  QAAVKLDPSHYFFS 2
           + AVKLD SHY+F+
Sbjct: 61  EPAVKLDSSHYYFT 74


>tr|A7QDV5|A7QDV5_VITVI Chromosome chr4 scaffold_83, whole genome
           shotgun sequence OS=Vitis vinifera GN=GSVIVT00036757001
           PE=4 SV=1
          Length = 395

 Score = 92.0 bits (227), Expect = 1e-17
 Identities = 43/77 (55%), Positives = 58/77 (75%)
 Frame = -1

Query: 232 SPVEASETLLVSVPDAVAHLVDREASPHLASGPFSIVRLNQDGNGIAVFARVGKELQWPL 53
           +P E+ E +LV +P  + HL+D++ S  LASG  SI+RL Q  N +AV ARVG+E+QWPL
Sbjct: 59  APPESLEEVLVMLPGVILHLIDKQYSVELASGDLSIIRLWQGNNIVAVLARVGQEIQWPL 118

Query: 52  TKDQAAVKLDPSHYFFS 2
            KD+A+VK+D SHYFFS
Sbjct: 119 AKDEASVKVDGSHYFFS 135


>tr|A9U3E2|A9U3E2_PHYPA Predicted protein OS=Physcomitrella patens
           subsp. patens GN=PHYPADRAFT_200827 PE=4 SV=1
          Length = 430

 Score = 91.7 bits (226), Expect = 2e-17
 Identities = 56/121 (46%), Positives = 67/121 (55%), Gaps = 5/121 (4%)
 Frame = -1

Query: 349 SLNAPAETPLSSDQQSRLRYPDPVS-----IDAITADLSKKIEVSPVEASETLLVSVPDA 185
           SL    ++P  S+  S L YP   S       A  AD++     SPV A E LLV++P A
Sbjct: 15  SLKIRPQSPFPSNASSSL-YPKIQSEGRPPAAAAAADMASGSANSPVGAFEELLVTIPGA 73

Query: 184 VAHLVDREASPHLASGPFSIVRLNQDGNGIAVFARVGKELQWPLTKDQAAVKLDPSHYFF 5
           + HLVD + S  LASG FSIVR+NQ    I V  R G  LQWPL  D+  VKLD  HY F
Sbjct: 74  LVHLVDDQESVLLASGDFSIVRINQQNQRIVVLVRAGDSLQWPLVSDEQVVKLDSIHYVF 133

Query: 4   S 2
           S
Sbjct: 134 S 134


>tr|A7P8A4|A7P8A4_VITVI Chromosome chr3 scaffold_8, whole genome
           shotgun sequence OS=Vitis vinifera GN=GSVIVT00036107001
           PE=4 SV=1
          Length = 410

 Score = 89.7 bits (221), Expect = 6e-17
 Identities = 43/71 (60%), Positives = 53/71 (74%)
 Frame = -1

Query: 214 ETLLVSVPDAVAHLVDREASPHLASGPFSIVRLNQDGNGIAVFARVGKELQWPLTKDQAA 35
           E +LV V  A+ HL+D++ S  LASG  +IVRL Q  N +AV AR+G E+QWPL KD+AA
Sbjct: 70  EEVLVRVSGAIVHLIDKQHSVELASGVLTIVRLRQGENVVAVLARIGDEIQWPLAKDEAA 129

Query: 34  VKLDPSHYFFS 2
           VKLD SHYFFS
Sbjct: 130 VKLDESHYFFS 140


>tr|O65635|O65635_ARATH Putative uncharacterized protein T19K4.110
           (Putative uncharacterized protein AT4g35980)
           OS=Arabidopsis thaliana GN=T19K4.110 PE=2 SV=1
          Length = 512

 Score = 89.4 bits (220), Expect = 8e-17
 Identities = 50/118 (42%), Positives = 72/118 (61%)
 Frame = -1

Query: 355 YPSLNAPAETPLSSDQQSRLRYPDPVSIDAITADLSKKIEVSPVEASETLLVSVPDAVAH 176
           YPS+N        +D  + + +PDP + D+ +A         P  A+E +++++  A+ H
Sbjct: 39  YPSINV-------NDLVNNI-FPDPTASDSASA---------PPLATEEVILTIHGAMVH 81

Query: 175 LVDREASPHLASGPFSIVRLNQDGNGIAVFARVGKELQWPLTKDQAAVKLDPSHYFFS 2
           L+D+  S  LA G   I+RL Q    +AVFARVG E+QWPLTKD+ AVK+D SHYFFS
Sbjct: 82  LIDKSYSVELACGDLEILRLVQGDITVAVFARVGDEIQWPLTKDEPAVKVDESHYFFS 139


>tr|A9RSE9|A9RSE9_PHYPA Predicted protein (Fragment)
           OS=Physcomitrella patens subsp. patens
           GN=PHYPADRAFT_22416 PE=4 SV=1
          Length = 371

 Score = 87.8 bits (216), Expect = 2e-16
 Identities = 41/76 (53%), Positives = 51/76 (67%)
 Frame = -1

Query: 229 PVEASETLLVSVPDAVAHLVDREASPHLASGPFSIVRLNQDGNGIAVFARVGKELQWPLT 50
           P+   E  L S P A+ +LVD + SPHLA+  FSIVR+ Q GN   V  RVG++L WPL 
Sbjct: 7   PLNPREECLFSTPVAIVYLVDEQQSPHLATDYFSIVRITQKGNDSVVIVRVGEDLHWPLM 66

Query: 49  KDQAAVKLDPSHYFFS 2
           KD   VKLDP+HYFF+
Sbjct: 67  KDVPTVKLDPTHYFFT 82


>tr|Q9SD22|Q9SD22_ARATH Putative uncharacterized protein F24M12.290
           (AT3g51250/F24M12_290) OS=Arabidopsis thaliana
           GN=F24M12.290 PE=2 SV=1
          Length = 463

 Score = 86.3 bits (212), Expect = 7e-16
 Identities = 40/77 (51%), Positives = 56/77 (72%)
 Frame = -1

Query: 232 SPVEASETLLVSVPDAVAHLVDREASPHLASGPFSIVRLNQDGNGIAVFARVGKELQWPL 53
           +P +A+E +L+ VP A+ +L+D+  S  LA G F+IVR+ Q  N +AV A VG E+QWPL
Sbjct: 69  APPQATEEVLIRVPGAILNLIDKSYSVELACGDFTIVRIIQGQNIVAVLANVGNEIQWPL 128

Query: 52  TKDQAAVKLDPSHYFFS 2
           TK++ A K+D SHYFFS
Sbjct: 129 TKNEVAAKVDGSHYFFS 145