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NBDC - LSDB Archive
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AcEST | BlastX Result : Swiss-Prot | BlastX Result : TrEMBL | AcESTcontig | About Libraries
BP918395
Clone id YMU001_000113_A05
Library
Length 328
Definition Adiantum capillus-veneris mRNA. clone: YMU001_000113_A05.
Accession
Tissue type prothallium
Developmental stage -
Contig ID -
Sequence 
CTACTACCTGATTCTGATGACGCCGGGCCCGCCACTCTGATGGTAGTGACGACTCTAATC
ACACCGGTTTCATTCAACAGATCACCAATGGGGACGCCCGTTCCTGCCCTCAGCTGCAGT
ACAGGTGCCCTCTCAAATGCCCTCATTGTGGATTCCGATGATGAAGATGTCGGCCAATCG
TCTATGTGGGTTCCAGAAGAAGATCATACTTCCTCCGACCTTCCACCTGACTTTCTTGAG
CCCCTTTCCCCTGATACCAAAGTCTTCTCCTCCCTGCCTCCCTTCCCCACCCTCTCACCC
GAAGACGAGCAACCCAAGAGCGCTCATG
■■Homology search results ■■ -
sp_hit_id Q9V8M2
Definition sp|Q9V8M2|C12B2_DROME Probable cytochrome P450 12b2, mitochondrial OS=Drosophila melanogaster
Align length 65
Score (bit) 33.1
E-value 0.45
Report 
BLASTX 2.2.19 [Nov-02-2008]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= BP918395|Adiantum capillus-veneris mRNA, clone:
YMU001_000113_A05.
         (328 letters)

Database: uniprot_sprot.fasta 
           412,525 sequences; 148,809,765 total letters

Searching..................................................done



                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

sp|Q9V8M2|C12B2_DROME Probable cytochrome P450 12b2, mitochondri...    33   0.45 
sp|O13286|SRW1_SCHPO WD repeat-containing protein srw1 OS=Schizo...    31   2.2  
sp|A5GPT7|PURT_SYNPW Phosphoribosylglycinamide formyltransferase...    31   2.2  
sp|Q6LAD6|ARPT2_PSESM Cysteine protease avirulence protein avrRp...    31   2.2  
sp|O43474|KLF4_HUMAN Krueppel-like factor 4 OS=Homo sapiens GN=K...    31   2.2  
sp|Q13477|MADCA_HUMAN Mucosal addressin cell adhesion molecule 1...    30   2.9  
sp|Q983A9|NUSB_RHILO N utilization substance protein B homolog O...    30   2.9  
sp|Q6E3D4|CPB3_CAERE Cytoplasmic polyadenylation element-binding...    30   5.0  
sp|Q4ZMC1|PQQE_PSEU2 Coenzyme PQQ synthesis protein E OS=Pseudom...    30   5.0  
sp|Q88A84|PQQE_PSESM Coenzyme PQQ synthesis protein E OS=Pseudom...    30   5.0  
sp|Q88QV8|PQQE_PSEPK Coenzyme PQQ synthesis protein E OS=Pseudom...    30   5.0  
sp|A5VXG4|PQQE_PSEP1 Coenzyme PQQ synthesis protein E OS=Pseudom...    30   5.0  
sp|Q4K4U8|PQQE_PSEF5 Coenzyme PQQ synthesis protein E OS=Pseudom...    30   5.0  
sp|Q9I2C0|PQQE_PSEAE Coenzyme PQQ synthesis protein E OS=Pseudom...    30   5.0  
sp|Q02LD6|PQQE_PSEAB Coenzyme PQQ synthesis protein E OS=Pseudom...    30   5.0  
sp|Q48CT3|PQQE_PSE14 Coenzyme PQQ synthesis protein E OS=Pseudom...    30   5.0  
sp|P27507|PQQE_KLEPN Coenzyme PQQ synthesis protein E OS=Klebsie...    30   5.0  
sp|A6T9H2|PQQE_KLEP7 Coenzyme PQQ synthesis protein E OS=Klebsie...    30   5.0  
sp|Q01060|PQQE_ESCVU Coenzyme PQQ synthesis protein E OS=Escheri...    30   5.0  
sp|P59748|PQQE_ENTIT Coenzyme PQQ synthesis protein E OS=Enterob...    30   5.0  
sp|P07782|PQQE_ACICA Coenzyme PQQ synthesis protein E OS=Acineto...    30   5.0  
sp|Q58047|Y630_METJA Putative phosphate permease MJ0630 OS=Metha...    29   6.5  
sp|Q64303|PAK2_RAT Serine/threonine-protein kinase PAK 2 OS=Ratt...    29   6.5  
sp|Q8CIN4|PAK2_MOUSE Serine/threonine-protein kinase PAK 2 OS=Mu...    29   6.5  
sp|Q9D842|APLF_MOUSE Aprataxin and PNK-like factor OS=Mus muscul...    29   6.5  
sp|P26536|VL1_HPV51 Major capsid protein L1 OS=Human papillomavi...    29   8.4  
sp|Q8NET4|RGAG1_HUMAN Retrotransposon gag domain-containing prot...    29   8.4  
sp|P16827|HEPA_HCMVA DNA helicase/primase complex-associated pro...    29   8.4  
sp|A7TR50|ATG9_VANPO Autophagy-related protein 9 OS=Vanderwaltoz...    29   8.4  

>sp|Q9V8M2|C12B2_DROME Probable cytochrome P450 12b2, mitochondrial
           OS=Drosophila melanogaster GN=Cyp12b2 PE=2 SV=1
          Length = 561

 Score = 33.1 bits (74), Expect = 0.45
 Identities = 25/65 (38%), Positives = 32/65 (49%), Gaps = 5/65 (7%)
 Frame = +1

Query: 52  TLITPVSFNRSPM-----GTPVPALSCSTGALSNALIVDSDDEDVGQSSMWVPEEDHTSS 216
           T ITP +F  +P      G  VP     TG L   L + +DD+   QSS ++PE     S
Sbjct: 420 TSITPGNFRITPKDLVLSGYQVPR---GTGVLMGVLELSNDDKYFAQSSEFIPER-WLKS 475

Query: 217 DLPPD 231
           DL PD
Sbjct: 476 DLAPD 480


>sp|O13286|SRW1_SCHPO WD repeat-containing protein srw1
           OS=Schizosaccharomyces pombe GN=srw1 PE=1 SV=1
          Length = 556

 Score = 30.8 bits (68), Expect = 2.2
 Identities = 19/65 (29%), Positives = 30/65 (46%)
 Frame = +1

Query: 70  SFNRSPMGTPVPALSCSTGALSNALIVDSDDEDVGQSSMWVPEEDHTSSDLPPDFLEPLS 249
           +FN SP+ TP   +  ST         DS  +D+  +    P   HTSS +  +   P++
Sbjct: 126 TFNNSPIATPNTTIGVSTPR------TDSGIDDIELTQRTPPSSSHTSSSILQN--TPVT 177

Query: 250 PDTKV 264
           P  K+
Sbjct: 178 PSRKI 182


>sp|A5GPT7|PURT_SYNPW Phosphoribosylglycinamide formyltransferase 2
           OS=Synechococcus sp. (strain WH7803) GN=purT PE=3 SV=1
          Length = 389

 Score = 30.8 bits (68), Expect = 2.2
 Identities = 17/54 (31%), Positives = 26/54 (48%), Gaps = 8/54 (14%)
 Frame = +1

Query: 49  TTLITPVSFN--------RSPMGTPVPALSCSTGALSNALIVDSDDEDVGQSSM 186
           T L+T +S N        R+ +G P+PA+ C+  A S  ++ D     V  S M
Sbjct: 281 TGLVTLISQNLNEFELHLRAVLGLPIPAIRCADAAASRVILADKHGSRVTYSGM 334


>sp|Q6LAD6|ARPT2_PSESM Cysteine protease avirulence protein avrRpt2
           OS=Pseudomonas syringae pv. tomato GN=avrRpt2 PE=1 SV=1
          Length = 255

 Score = 30.8 bits (68), Expect = 2.2
 Identities = 17/47 (36%), Positives = 24/47 (51%)
 Frame = +1

Query: 58  ITPVSFNRSPMGTPVPALSCSTGALSNALIVDSDDEDVGQSSMWVPE 198
           I PV+ N SP+   VP+ +  T A    L  ++ D D  +SS   PE
Sbjct: 3   IAPVAINHSPLSREVPSHAAPTQAKQTNLQSEAGDLDARKSSASSPE 49


>sp|O43474|KLF4_HUMAN Krueppel-like factor 4 OS=Homo sapiens GN=KLF4
           PE=1 SV=3
          Length = 513

 Score = 30.8 bits (68), Expect = 2.2
 Identities = 12/39 (30%), Positives = 18/39 (46%)
 Frame = +3

Query: 36  SDGSDDSNHTGFIQQITNGDARSCPQLQYRCPLKCPHCG 152
           S GS D +H   +     G  R+CP+++      C H G
Sbjct: 251 SKGSPDGSHPVVVAPYNGGPPRTCPKIKQEAVSSCTHLG 289


>sp|Q13477|MADCA_HUMAN Mucosal addressin cell adhesion molecule 1
           OS=Homo sapiens GN=MADCAM1 PE=1 SV=2
          Length = 382

 Score = 30.4 bits (67), Expect = 2.9
 Identities = 22/59 (37%), Positives = 25/59 (42%), Gaps = 1/59 (1%)
 Frame = +1

Query: 85  PMGTPVP-ALSCSTGALSNALIVDSDDEDVGQSSMWVPEEDHTSSDLPPDFLEPLSPDT 258
           P+GTPVP AL C        L +          S   PE   T+S   PD   P SPDT
Sbjct: 193 PLGTPVPPALYCQATMRLPGLELSHRQAIPVLHSPTSPEPPDTTSPESPDTTSPESPDT 251


>sp|Q983A9|NUSB_RHILO N utilization substance protein B homolog
           OS=Rhizobium loti GN=nusB PE=3 SV=1
          Length = 155

 Score = 30.4 bits (67), Expect = 2.9
 Identities = 16/38 (42%), Positives = 23/38 (60%)
 Frame = -3

Query: 182 DDWPTSSSSESTMRAFERAPVLQLRAGTGVPIGDLLNE 69
           DDWP S   +ST+RA  RA V +L     VP+  +++E
Sbjct: 81  DDWPLSRL-DSTLRAILRAGVYELMKREDVPVAVIVSE 117


>sp|Q6E3D4|CPB3_CAERE Cytoplasmic polyadenylation element-binding
           protein 3 OS=Caenorhabditis remanei GN=cpb-3 PE=2 SV=1
          Length = 766

 Score = 29.6 bits (65), Expect = 5.0
 Identities = 19/54 (35%), Positives = 25/54 (46%)
 Frame = +1

Query: 67  VSFNRSPMGTPVPALSCSTGALSNALIVDSDDEDVGQSSMWVPEEDHTSSDLPP 228
           V FN +PM TP   + CS G+   A   +S       SS +      TSS+L P
Sbjct: 673 VFFNSTPMMTPQKGVPCSDGSAVPAYYANSAAFLTPPSSYYNSPSHSTSSNLSP 726


>sp|Q4ZMC1|PQQE_PSEU2 Coenzyme PQQ synthesis protein E
           OS=Pseudomonas syringae pv. syringae (strain B728a)
           GN=pqqE PE=3 SV=1
          Length = 389

 Score = 29.6 bits (65), Expect = 5.0
 Identities = 9/13 (69%), Positives = 12/13 (92%)
 Frame = +3

Query: 111 QLQYRCPLKCPHC 149
           +L YRCPL+CP+C
Sbjct: 28  ELTYRCPLQCPYC 40


>sp|Q88A84|PQQE_PSESM Coenzyme PQQ synthesis protein E
           OS=Pseudomonas syringae pv. tomato GN=pqqE PE=3 SV=1
          Length = 389

 Score = 29.6 bits (65), Expect = 5.0
 Identities = 9/13 (69%), Positives = 12/13 (92%)
 Frame = +3

Query: 111 QLQYRCPLKCPHC 149
           +L YRCPL+CP+C
Sbjct: 28  ELTYRCPLQCPYC 40
tr_hit_id B8DKZ0
Definition tr|B8DKZ0|B8DKZ0_DESVM Putative uncharacterized protein OS=Desulfovibrio vulgaris (strain Miyazaki)
Align length 82
Score (bit) 36.2
E-value 0.83
Report 
BLASTX 2.2.19 [Nov-02-2008]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= BP918395|Adiantum capillus-veneris mRNA, clone:
YMU001_000113_A05.
         (328 letters)

Database: uniprot_trembl.fasta 
           7,341,751 sequences; 2,391,615,440 total letters

Searching..................................................done



                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

tr|B8DKZ0|B8DKZ0_DESVM Putative uncharacterized protein OS=Desul...    36   0.83 
tr|Q0G4V4|Q0G4V4_9RHIZ Putative uncharacterized protein OS=Fulvi...    34   4.1  
tr|Q871J9|Q871J9_NEUCR Related to DNA-damage repair protein DRT1...    33   5.4  
tr|Q7S7F5|Q7S7F5_NEUCR Putative uncharacterized protein OS=Neuro...    33   5.4  
tr|Q4RS43|Q4RS43_TETNG Chromosome 7 SCAF15001, whole genome shot...    33   7.0  
tr|Q4V474|Q4V474_DROME IP03594p (Fragment) OS=Drosophila melanog...    33   7.0  
tr|Q4Q6D2|Q4Q6D2_LEIMA Putative uncharacterized protein OS=Leish...    33   7.0  
tr|B2VUC2|B2VUC2_PYRTR Putative uncharacterized protein OS=Pyren...    33   7.0  
tr|B4FYZ6|B4FYZ6_MAIZE Putative uncharacterized protein OS=Zea m...    33   9.1  

>tr|B8DKZ0|B8DKZ0_DESVM Putative uncharacterized protein
           OS=Desulfovibrio vulgaris (strain Miyazaki) GN=DvMF_0736
           PE=4 SV=1
          Length = 138

 Score = 36.2 bits (82), Expect = 0.83
 Identities = 26/82 (31%), Positives = 38/82 (46%), Gaps = 1/82 (1%)
 Frame = +1

Query: 10  DSDDAGPATLMVVTTLITPVSFNRSPMGTPVPALSCSTGALSNALIVDSDDEDVGQSSMW 189
           D+D+ GPA +  +  L  PV     P+GTPV A     GA+++A     D+   G +   
Sbjct: 29  DADELGPARMSAI--LADPVLL-AVPLGTPVDAGETEAGAVADAAPSGQDESSTGDA--- 82

Query: 190 VPEEDHTSSDLP-PDFLEPLSP 252
            P   HT    P P+    L+P
Sbjct: 83  -PAAQHTEDPQPAPEAAPALAP 103


>tr|Q0G4V4|Q0G4V4_9RHIZ Putative uncharacterized protein
           OS=Fulvimarina pelagi HTCC2506 GN=FP2506_10711 PE=4 SV=1
          Length = 173

 Score = 33.9 bits (76), Expect = 4.1
 Identities = 16/51 (31%), Positives = 27/51 (52%)
 Frame = +1

Query: 22  AGPATLMVVTTLITPVSFNRSPMGTPVPALSCSTGALSNALIVDSDDEDVG 174
           AG       + ++ PV   R    TP+PAL+   G ++   ++ SDDE++G
Sbjct: 65  AGERQTAATSQVLIPVENER----TPIPALNLMAGQIAEMSVIGSDDEEIG 111


>tr|Q871J9|Q871J9_NEUCR Related to DNA-damage repair protein DRT111
           OS=Neurospora crassa GN=20H10.190 PE=4 SV=1
          Length = 516

 Score = 33.5 bits (75), Expect = 5.4
 Identities = 25/81 (30%), Positives = 34/81 (41%)
 Frame = +1

Query: 7   PDSDDAGPATLMVVTTLITPVSFNRSPMGTPVPALSCSTGALSNALIVDSDDEDVGQSSM 186
           P    A P+     T    PV +   P     P      G+  +A+ +DSDDEDV   S+
Sbjct: 280 PQPPAAEPSVPDTATISRAPVRYEAPPQPPSAP-----DGSGHDAMDLDSDDEDVNYDSI 334

Query: 187 WVPEEDHTSSDLPPDFLEPLS 249
            VP    ++S  P D   P S
Sbjct: 335 PVPLGTGSASPAPEDADAPKS 355


>tr|Q7S7F5|Q7S7F5_NEUCR Putative uncharacterized protein
           OS=Neurospora crassa GN=NCU08942 PE=4 SV=1
          Length = 548

 Score = 33.5 bits (75), Expect = 5.4
 Identities = 25/81 (30%), Positives = 34/81 (41%)
 Frame = +1

Query: 7   PDSDDAGPATLMVVTTLITPVSFNRSPMGTPVPALSCSTGALSNALIVDSDDEDVGQSSM 186
           P    A P+     T    PV +   P     P      G+  +A+ +DSDDEDV   S+
Sbjct: 280 PQPPAAEPSVPDTATISRAPVRYEAPPQPPSAP-----DGSGHDAMDLDSDDEDVNYDSI 334

Query: 187 WVPEEDHTSSDLPPDFLEPLS 249
            VP    ++S  P D   P S
Sbjct: 335 PVPLGTGSASPAPEDADAPKS 355


>tr|Q4RS43|Q4RS43_TETNG Chromosome 7 SCAF15001, whole genome shotgun
           sequence OS=Tetraodon nigroviridis GN=GSTENG00029876001
           PE=4 SV=1
          Length = 1578

 Score = 33.1 bits (74), Expect = 7.0
 Identities = 24/66 (36%), Positives = 32/66 (48%), Gaps = 5/66 (7%)
 Frame = +1

Query: 61  TPVS-FNRSPMGTPVPALSCSTGALSNALIVDSDDEDVG----QSSMWVPEEDHTSSDLP 225
           TP S FN +P  TP+PAL CS G     ++   DD  VG    + S+ +       S   
Sbjct: 573 TPQSPFNSNPPLTPIPALLCSDG----GMVQSQDDSIVGTKQCRHSVAIMPIPGNLSSSS 628

Query: 226 PDFLEP 243
           PD L+P
Sbjct: 629 PDLLQP 634


>tr|Q4V474|Q4V474_DROME IP03594p (Fragment) OS=Drosophila
           melanogaster GN=Cyp12b2 PE=2 SV=1
          Length = 319

 Score = 33.1 bits (74), Expect = 7.0
 Identities = 25/65 (38%), Positives = 32/65 (49%), Gaps = 5/65 (7%)
 Frame = +1

Query: 52  TLITPVSFNRSPM-----GTPVPALSCSTGALSNALIVDSDDEDVGQSSMWVPEEDHTSS 216
           T ITP +F  +P      G  VP     TG L   L + +DD+   QSS ++PE     S
Sbjct: 178 TSITPGNFRITPKDLVLSGYQVPR---GTGVLMGVLELSNDDKYFAQSSEFIPER-WLKS 233

Query: 217 DLPPD 231
           DL PD
Sbjct: 234 DLAPD 238


>tr|Q4Q6D2|Q4Q6D2_LEIMA Putative uncharacterized protein OS=Leishmania
            major GN=LmjF31.1310 PE=4 SV=1
          Length = 1528

 Score = 33.1 bits (74), Expect = 7.0
 Identities = 16/45 (35%), Positives = 24/45 (53%)
 Frame = +1

Query: 112  SCSTGALSNALIVDSDDEDVGQSSMWVPEEDHTSSDLPPDFLEPL 246
            SC+    S A+  D DD  +  S +W  +ED   ++ PP F+ PL
Sbjct: 1220 SCAWPHHSCAIETDDDDSQLEGSGLWCGDEDAHEANPPPVFVPPL 1264


>tr|B2VUC2|B2VUC2_PYRTR Putative uncharacterized protein
           OS=Pyrenophora tritici-repentis (strain Pt-1C-BFP)
           GN=PTRG_02095 PE=4 SV=1
          Length = 325

 Score = 33.1 bits (74), Expect = 7.0
 Identities = 16/29 (55%), Positives = 18/29 (62%)
 Frame = +1

Query: 19  DAGPATLMVVTTLITPVSFNRSPMGTPVP 105
           DA    L+ +T   TP SFN SP GTPVP
Sbjct: 44  DANQLQLLSITLNHTPSSFNPSPNGTPVP 72


>tr|B4FYZ6|B4FYZ6_MAIZE Putative uncharacterized protein OS=Zea mays
           PE=2 SV=1
          Length = 678

 Score = 32.7 bits (73), Expect = 9.1
 Identities = 22/63 (34%), Positives = 29/63 (46%)
 Frame = +1

Query: 64  PVSFNRSPMGTPVPALSCSTGALSNALIVDSDDEDVGQSSMWVPEEDHTSSDLPPDFLEP 243
           P   N SP+  P P+LS S    S   ++  DDEDV +  +  P+ D    D P  F  P
Sbjct: 47  PSPQNLSPLPVPFPSLSLS----SAPFVISDDDEDVDE--IVDPDGDSPIVDAPEVFSPP 100

Query: 244 LSP 252
             P
Sbjct: 101 APP 103