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AcEST | BlastX Result : Swiss-Prot | BlastX Result : TrEMBL | AcESTcontig | About Libraries
NBDC - LSDB Archive
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AcEST | BlastX Result : Swiss-Prot | BlastX Result : TrEMBL | AcESTcontig | About Libraries
BP918397
Clone id YMU001_000113_A08
Library
Length 462
Definition Adiantum capillus-veneris mRNA. clone: YMU001_000113_A08.
Accession
Tissue type prothallium
Developmental stage -
Contig ID -
Sequence 
CGGCGGCACAAAAATTTTGCTCAGGAGGATCTGTATATTCAATGGTGATGCCCAAAGAAG
AGCCAACAATTTTGTGCAGGTCAAGCTGAAGATACTTGAGTATATATCAATGCAGAGGCC
AAAGACCACATCCAAAATCATTCAAATTATTCATCATACTATGGTTGCCTCAAGGATCTT
CCCTCCAAGAAAAGTGTTCACAAGTTTATTGAGAAAGGAAGACAAAACGCCAAGGAGGAG
AAAAGCCTACTCTGCCTTCTTAAGGCAAGACACAAAACAACAAGAACAAGTATGAAAAGG
AGTCTACAAAGACGACAACAAGCTCTCTCACGAAGAGCTTAAGAGATATAGGAAAGAGCA
TGTATGTTCCCTCTTGTGAGGAAACTAAAGACAGCTATTGTGCATGCCTCACAAAAGGAG
CCAAAAATGACAACCCTCAAGTATTATTTTATACAATAGGCT
■■Homology search results ■■ -
sp_hit_id Q6BPI8
Definition sp|Q6BPI8|TOF1_DEBHA Topoisomerase 1-associated factor 1 OS=Debaryomyces hansenii
Align length 98
Score (bit) 32.3
E-value 1.0
Report 
BLASTX 2.2.19 [Nov-02-2008]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= BP918397|Adiantum capillus-veneris mRNA, clone:
YMU001_000113_A08.
         (462 letters)

Database: uniprot_sprot.fasta 
           412,525 sequences; 148,809,765 total letters

Searching..................................................done



                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

sp|Q6BPI8|TOF1_DEBHA Topoisomerase 1-associated factor 1 OS=Deba...    32   1.0  
sp|Q54XP4|CRNL1_DICDI Crooked neck-like protein 1 OS=Dictyosteli...    30   6.5  

>sp|Q6BPI8|TOF1_DEBHA Topoisomerase 1-associated factor 1
           OS=Debaryomyces hansenii GN=TOF1 PE=3 SV=2
          Length = 1299

 Score = 32.3 bits (72), Expect = 1.0
 Identities = 19/98 (19%), Positives = 45/98 (45%)
 Frame = +2

Query: 65  NNFVQVKLKILEYISMQRPKTTSKIIQIIHHTMVASRIFPPRKVFTSLLRKEDKTPRRRK 244
           N+F+ + ++I +  S   P+  S  I ++H  + +   F    +   +  K  +T + +K
Sbjct: 626 NDFLNIVIQIPQTASKHSPEYLSVCISVVHIILKSFESFANENIKLYIQTKRKRTKQNKK 685

Query: 245 AYSAFLRQDTKQQEQV*KGVYKDDNKLSHEELKRYRKE 358
           + +     D   +E +   +   D++L +E +K   +E
Sbjct: 686 SINTL---DKATEESLRDVIEGSDDELENERVKEVSRE 720


>sp|Q54XP4|CRNL1_DICDI Crooked neck-like protein 1 OS=Dictyostelium
           discoideum GN=crnkl1 PE=3 SV=1
          Length = 705

 Score = 29.6 bits (65), Expect = 6.5
 Identities = 19/75 (25%), Positives = 33/75 (44%)
 Frame = +2

Query: 53  QRRANNFVQVKLKILEYISMQRPKTTSKIIQIIHHTMVASRIFPPRKVFTSLLRKEDKTP 232
           Q R     +VK K    + +    T  +I+++ H         PP++V T     ED   
Sbjct: 3   QNRTGGVSKVKNKSAAPVQI----TAEQILRVAHENQQTLPKAPPKQVITDQEELEDYRL 58

Query: 233 RRRKAYSAFLRQDTK 277
           R+R+ Y + L ++ K
Sbjct: 59  RKRQQYESLLGRNRK 73
tr_hit_id Q54BD2
Definition tr|Q54BD2|Q54BD2_DICDI Putative uncharacterized protein OS=Dictyostelium discoideum
Align length 51
Score (bit) 33.5
E-value 5.4
Report 
BLASTX 2.2.19 [Nov-02-2008]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= BP918397|Adiantum capillus-veneris mRNA, clone:
YMU001_000113_A08.
         (462 letters)

Database: uniprot_trembl.fasta 
           7,341,751 sequences; 2,391,615,440 total letters

Searching..................................................done



                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

tr|Q54BD2|Q54BD2_DICDI Putative uncharacterized protein OS=Dicty...    33   5.4  
tr|Q8IEU9|Q8IEU9_PLAF7 Erythrocyte membrane protein 1 (PfEMP1) O...    33   7.0  
tr|B1HU83|B1HU83_LYSSC Regulatory protein, MarR OS=Lysinibacillu...    33   9.2  

>tr|Q54BD2|Q54BD2_DICDI Putative uncharacterized protein
           OS=Dictyostelium discoideum GN=DDB_0192095 PE=4 SV=1
          Length = 845

 Score = 33.5 bits (75), Expect = 5.4
 Identities = 16/51 (31%), Positives = 29/51 (56%)
 Frame = +2

Query: 65  NNFVQVKLKILEYISMQRPKTTSKIIQIIHHTMVASRIFPPRKVFTSLLRK 217
           N +  + LKI++Y+  + P+ TSK I  IH+  + S I    K+  +L ++
Sbjct: 185 NEYNDLNLKIIDYLFKEMPQLTSKFIMEIHYKTIDSPIESFSKLLNNLKKE 235


>tr|Q8IEU9|Q8IEU9_PLAF7 Erythrocyte membrane protein 1 (PfEMP1)
            OS=Plasmodium falciparum (isolate 3D7) GN=PF13_0003 PE=4
            SV=1
          Length = 3346

 Score = 33.1 bits (74), Expect = 7.0
 Identities = 16/47 (34%), Positives = 23/47 (48%)
 Frame = +3

Query: 111  CRGQRPHPKSFKLFIILWLPQGSSLQEKCSQVY*ERKTKRQGGEKPT 251
            C   +P  + +K FI  W PQ   +++K SQ+Y E K       K T
Sbjct: 1068 CVTCKPACEKYKKFINTWQPQWKQMEQKYSQLYEEAKKYNDSSRKDT 1114


>tr|B1HU83|B1HU83_LYSSC Regulatory protein, MarR OS=Lysinibacillus
           sphaericus (strain C3-41) GN=Bsph_2061 PE=4 SV=1
          Length = 145

 Score = 32.7 bits (73), Expect = 9.2
 Identities = 20/74 (27%), Positives = 36/74 (48%)
 Frame = +2

Query: 68  NFVQVKLKILEYISMQRPKTTSKIIQIIHHTMVASRIFPPRKVFTSLLRKEDKTPRRRKA 247
           N   ++ KILEYI + +P T ++I +  H ++  +     +    +L+ K + T  RRK 
Sbjct: 32  NITPLQYKILEYIKVSQPVTPTEISECQHMSLPNTSRELRKLQDQNLIEKYNDTEDRRKQ 91

Query: 248 YSAFLRQDTKQQEQ 289
           Y     +  K  E+
Sbjct: 92  YIRLSIEGDKMMEE 105