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NBDC - LSDB Archive
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AcEST | BlastX Result : Swiss-Prot | BlastX Result : TrEMBL | AcESTcontig | About Libraries
BP918398
Clone id YMU001_000113_A09
Library
Length 466
Definition Adiantum capillus-veneris mRNA. clone: YMU001_000113_A09.
Accession
Tissue type prothallium
Developmental stage -
Contig ID
Sequence 
GGTACTTGCTAGGTTAACGTGTTGGCGGGTCGAAGTCTTCGTCCAGGCTGCGGGGCACGA
GGGTGAATCCTAGTGAGCTACTGTTGTAGGAAGCTGGAATGAAGAAATATATGCAGAATA
TAGTCATGAGGAGCTGCAGGAGGAAAGAGATGGATATAGAGGTGGAAGGAAGAAGTGCAT
GCTCAATATACTCATGCAGAATATAGTCATGAGGAGCTGCAGGAGGAAAGAGATGGATAT
GGAGGTGGAAGGAAGAAGTGCATGCTCAATATACTCATGCAGGGTGGCCATTATACTATA
TCTACTGATGCGTGCTCAACAACCACAGAAGATCAGCTGCTCATTCTAACCTACAGCGAG
CAGCCTGCTTTGAGAGCAGAATATACGCAAAAGTGGCCATCATCTACACAGAAGAAGTTT
TACACATTATAGGCCTATCTCAATATGCAGGAGGAAGATAGAGTCC
■■Homology search results ■■ -
sp_hit_id A4UYK8
Definition sp|A4UYK8|IL1B_MUSPF Interleukin-1 beta OS=Mustela putorius furo
Align length 55
Score (bit) 31.6
E-value 1.8
Report 
BLASTX 2.2.19 [Nov-02-2008]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= BP918398|Adiantum capillus-veneris mRNA, clone:
YMU001_000113_A09.
         (466 letters)

Database: uniprot_sprot.fasta 
           412,525 sequences; 148,809,765 total letters

Searching..................................................done



                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

sp|A4UYK8|IL1B_MUSPF Interleukin-1 beta OS=Mustela putorius furo...    32   1.8  
sp|Q9QXP4|DONS_MOUSE Protein downstream neighbor of Son OS=Mus m...    31   2.3  
sp|Q8AV58|SDK1_CHICK Protein sidekick-1 OS=Gallus gallus GN=SDK1...    30   5.2  
sp|Q8G285|PSD_BRUSU Phosphatidylserine decarboxylase proenzyme O...    30   6.8  
sp|B0CKC7|PSD_BRUSI Phosphatidylserine decarboxylase proenzyme O...    30   6.8  
sp|A5VP16|PSD_BRUO2 Phosphatidylserine decarboxylase proenzyme O...    30   6.8  
sp|Q8YFM9|PSD_BRUME Phosphatidylserine decarboxylase proenzyme O...    30   6.8  
sp|A9M8W7|PSD_BRUC2 Phosphatidylserine decarboxylase proenzyme O...    30   6.8  
sp|Q57ES4|PSD_BRUAB Phosphatidylserine decarboxylase proenzyme O...    30   6.8  
sp|Q2YMI0|PSD_BRUA2 Phosphatidylserine decarboxylase proenzyme O...    30   6.8  
sp|Q54DN3|XPO7_DICDI Exportin-7 OS=Dictyostelium discoideum GN=x...    29   8.9  

>sp|A4UYK8|IL1B_MUSPF Interleukin-1 beta OS=Mustela putorius furo
           GN=IL1B PE=2 SV=1
          Length = 270

 Score = 31.6 bits (70), Expect = 1.8
 Identities = 16/55 (29%), Positives = 28/55 (50%), Gaps = 1/55 (1%)
 Frame = +2

Query: 302 LLMRAQQPQKISCSF*PTASSLL*EQNIR-KSGHHLHRRSFTHYRPISICRRKIE 463
           L   A  P K+ C F    +S L E+ I+ +  H LH +S +H+  + +   K++
Sbjct: 23  LFFEADGPGKMKCCFQDLNNSYLEEEGIQLQISHQLHNKSLSHFVSVIVALEKLK 77


>sp|Q9QXP4|DONS_MOUSE Protein downstream neighbor of Son OS=Mus
           musculus GN=Donson PE=2 SV=2
          Length = 560

 Score = 31.2 bits (69), Expect = 2.3
 Identities = 13/32 (40%), Positives = 20/32 (62%)
 Frame = -1

Query: 193 EYIEHALLPSTSISISFLLQLLMTIFCIYFFI 98
           E ++HAL+   S+S + L  LL T  C YF++
Sbjct: 247 ETLQHALMSDWSVSFTSLYNLLKTKLCPYFYV 278


>sp|Q8AV58|SDK1_CHICK Protein sidekick-1 OS=Gallus gallus GN=SDK1
           PE=2 SV=1
          Length = 2169

 Score = 30.0 bits (66), Expect = 5.2
 Identities = 20/63 (31%), Positives = 29/63 (46%), Gaps = 10/63 (15%)
 Frame = -1

Query: 226 PPAAPHDYILHEYI----------EHALLPSTSISISFLLQLLMTIFCIYFFIPASYNSS 77
           PP + H+ +LH YI          E+     TS  I++ L   + I+  Y    ASYN +
Sbjct: 744 PPESEHNGVLHGYILRYRLAGLPGEYQYKNITSAEINYCLVTDLIIWTQYEIQVASYNGA 803

Query: 76  SLG 68
            LG
Sbjct: 804 GLG 806


>sp|Q8G285|PSD_BRUSU Phosphatidylserine decarboxylase proenzyme
           OS=Brucella suis GN=psd PE=3 SV=1
          Length = 232

 Score = 29.6 bits (65), Expect = 6.8
 Identities = 16/58 (27%), Positives = 27/58 (46%), Gaps = 15/58 (25%)
 Frame = -1

Query: 145 FLLQLLMTIFCIYFF---------------IPASYNSSSLGFTLVPRSLDEDFDPPTR 17
           F + +++T++CIYF+                PA    S +G  + P  LD  ++P TR
Sbjct: 40  FWIGMVLTVWCIYFYRDPERVTPMDDDLVISPADGKVSFVGLAVPPAELDLGYEPMTR 97


>sp|B0CKC7|PSD_BRUSI Phosphatidylserine decarboxylase proenzyme
           OS=Brucella suis (strain ATCC 23445 / NCTC 10510) GN=psd
           PE=3 SV=1
          Length = 232

 Score = 29.6 bits (65), Expect = 6.8
 Identities = 16/58 (27%), Positives = 27/58 (46%), Gaps = 15/58 (25%)
 Frame = -1

Query: 145 FLLQLLMTIFCIYFF---------------IPASYNSSSLGFTLVPRSLDEDFDPPTR 17
           F + +++T++CIYF+                PA    S +G  + P  LD  ++P TR
Sbjct: 40  FWIGMVLTVWCIYFYRDPERVTPMDDDLVISPADGKVSFVGLAVPPAELDLGYEPMTR 97


>sp|A5VP16|PSD_BRUO2 Phosphatidylserine decarboxylase proenzyme
           OS=Brucella ovis (strain ATCC 25840 / 63/290 / NCTC
           10512) GN=psd PE=3 SV=1
          Length = 232

 Score = 29.6 bits (65), Expect = 6.8
 Identities = 16/58 (27%), Positives = 27/58 (46%), Gaps = 15/58 (25%)
 Frame = -1

Query: 145 FLLQLLMTIFCIYFF---------------IPASYNSSSLGFTLVPRSLDEDFDPPTR 17
           F + +++T++CIYF+                PA    S +G  + P  LD  ++P TR
Sbjct: 40  FWIGMVLTVWCIYFYRDPERVTPMDDDLVISPADGKVSFVGLAVPPAELDLGYEPMTR 97


>sp|Q8YFM9|PSD_BRUME Phosphatidylserine decarboxylase proenzyme
           OS=Brucella melitensis GN=psd PE=3 SV=2
          Length = 232

 Score = 29.6 bits (65), Expect = 6.8
 Identities = 16/58 (27%), Positives = 27/58 (46%), Gaps = 15/58 (25%)
 Frame = -1

Query: 145 FLLQLLMTIFCIYFF---------------IPASYNSSSLGFTLVPRSLDEDFDPPTR 17
           F + +++T++CIYF+                PA    S +G  + P  LD  ++P TR
Sbjct: 40  FWIGMVLTVWCIYFYRDPERVTPMDDDLVISPADGKVSFVGLAVPPAELDLGYEPMTR 97


>sp|A9M8W7|PSD_BRUC2 Phosphatidylserine decarboxylase proenzyme
           OS=Brucella canis (strain ATCC 23365 / NCTC 10854)
           GN=psd PE=3 SV=1
          Length = 232

 Score = 29.6 bits (65), Expect = 6.8
 Identities = 16/58 (27%), Positives = 27/58 (46%), Gaps = 15/58 (25%)
 Frame = -1

Query: 145 FLLQLLMTIFCIYFF---------------IPASYNSSSLGFTLVPRSLDEDFDPPTR 17
           F + +++T++CIYF+                PA    S +G  + P  LD  ++P TR
Sbjct: 40  FWIGMVLTVWCIYFYRDPERVTPMDDDLVISPADGKVSFVGLAVPPAELDLGYEPMTR 97


>sp|Q57ES4|PSD_BRUAB Phosphatidylserine decarboxylase proenzyme
           OS=Brucella abortus GN=psd PE=3 SV=1
          Length = 232

 Score = 29.6 bits (65), Expect = 6.8
 Identities = 16/58 (27%), Positives = 27/58 (46%), Gaps = 15/58 (25%)
 Frame = -1

Query: 145 FLLQLLMTIFCIYFF---------------IPASYNSSSLGFTLVPRSLDEDFDPPTR 17
           F + +++T++CIYF+                PA    S +G  + P  LD  ++P TR
Sbjct: 40  FWIGMVLTVWCIYFYRDPERVTPMDDDLVISPADGKVSFVGLAVPPAELDLGYEPMTR 97


>sp|Q2YMI0|PSD_BRUA2 Phosphatidylserine decarboxylase proenzyme
           OS=Brucella abortus (strain 2308) GN=psd PE=3 SV=1
          Length = 232

 Score = 29.6 bits (65), Expect = 6.8
 Identities = 16/58 (27%), Positives = 27/58 (46%), Gaps = 15/58 (25%)
 Frame = -1

Query: 145 FLLQLLMTIFCIYFF---------------IPASYNSSSLGFTLVPRSLDEDFDPPTR 17
           F + +++T++CIYF+                PA    S +G  + P  LD  ++P TR
Sbjct: 40  FWIGMVLTVWCIYFYRDPERVTPMDDDLVISPADGKVSFVGLAVPPAELDLGYEPMTR 97
tr_hit_id B7HAU7
Definition tr|B7HAU7|B7HAU7_BACCE Spore germination protein OS=Bacillus cereus B4264
Align length 61
Score (bit) 33.5
E-value 5.5
Report 
BLASTX 2.2.19 [Nov-02-2008]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= BP918398|Adiantum capillus-veneris mRNA, clone:
YMU001_000113_A09.
         (466 letters)

Database: uniprot_trembl.fasta 
           7,341,751 sequences; 2,391,615,440 total letters

Searching..................................................done



                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

tr|B7HAU7|B7HAU7_BACCE Spore germination protein OS=Bacillus cer...    33   5.5  
tr|Q1G8P7|Q1G8P7_LACDA Hypothetical membrane protein OS=Lactobac...    33   9.4  
tr|B1MYN9|B1MYN9_LEUCK Putative glycerophosphodiester phosphodie...    33   9.4  

>tr|B7HAU7|B7HAU7_BACCE Spore germination protein OS=Bacillus cereus
           B4264 GN=gerSB PE=4 SV=1
          Length = 365

 Score = 33.5 bits (75), Expect = 5.5
 Identities = 22/61 (36%), Positives = 33/61 (54%)
 Frame = -1

Query: 253 SFHLHIHLFPPAAPHDYILHEYIEHALLPSTSISISFLLQLLMTIFCIYFFIPASYNSSS 74
           SF+L I +F    P+ +   + I   LL   S S+   + L   IF ++F+IP+SY  SS
Sbjct: 273 SFYLFI-IFDSCIPYIFTASDGINQ-LLNKKSSSLPIYVLLFGCIFILFFYIPSSYQISS 330

Query: 73  L 71
           L
Sbjct: 331 L 331


>tr|Q1G8P7|Q1G8P7_LACDA Hypothetical membrane protein
           OS=Lactobacillus delbrueckii subsp. bulgaricus (strain
           ATCC 11842 / DSM 20081) GN=Ldb1829 PE=4 SV=1
          Length = 411

 Score = 32.7 bits (73), Expect = 9.4
 Identities = 16/58 (27%), Positives = 36/58 (62%), Gaps = 3/58 (5%)
 Frame = -2

Query: 336 LIFCGC*ARISRYSIMATLHEYIEHALLP---STSISISFLLQLLMTIFCMSILSMHF 172
           L++ G  +++   S + +  + + + LLP   + S+ ISF+L LL+T+  +++++ HF
Sbjct: 342 LLYAGSYSKMLADSSVGSSSQIVLNGLLPRAETVSLLISFILMLLITVLAIALVAAHF 399


>tr|B1MYN9|B1MYN9_LEUCK Putative glycerophosphodiester
           phosphodiesterase OS=Leuconostoc citreum (strain KM20)
           GN=LCK_00809 PE=4 SV=1
          Length = 616

 Score = 32.7 bits (73), Expect = 9.4
 Identities = 16/42 (38%), Positives = 26/42 (61%)
 Frame = -1

Query: 205 YILHEYIEHALLPSTSISISFLLQLLMTIFCIYFFIPASYNS 80
           Y  HE+ + A+ PST++    LLQ++ TIF + F +   Y+S
Sbjct: 303 YTKHEFKQPAM-PSTTLKKRSLLQIIFTIFFLVFIVKGVYDS 343