BP918399 |
Clone id |
YMU001_000113_A10 |
Library |
YMU01 |
Length |
464 |
Definition |
Adiantum capillus-veneris mRNA. clone: YMU001_000113_A10. |
Accession |
BP918399 |
Tissue type |
prothallium |
Developmental stage |
- |
Contig ID |
- |
Sequence |
AACTGGAAGAATTCGCGGAAAACTATACGAGACATACGAAATAACTAATATACGAAACGA AAGCGACCAATGAAAATACGTCAGTTTCTTACTCATGTAAATAAACTATTTCTTAGCGAC GGCGACAACTTTTCTAAAGCCTTATTCGGTTATGGTCGATCAATCGGGTGAGAGTTCCCT GCCTGACCGCCGATTCAGAACCGCCCGTGACAGTTTCCTGTCATACGGCTCCCCGCATCC CATCAGGTAGGGGTTCTGGAATGCAAGCTCCCCTGCCCTCTTCCGATCGTAACAATGCCC ATATAGCAACTGTCGCAGGTACTATTAGCAGCTCATGCCTCCCAAACAACGTAAAATGAT GCAATCTCTTTTTACTTATAATGTCCACAGGCAAGAAAAACACACACACAAAAAACACCT ACGCCGGCCGCGGGTTCTACTTTCTTGTCGCTTTAGCCTTATCG |
■■Homology search results ■■ |
- |
Swiss-Prot (release 56.9) |
Link to BlastX Result : Swiss-Prot |
sp_hit_id |
Q07990 |
Definition |
sp|Q07990|YL042_YEAST Cell wall protein YLR042C OS=Saccharomyces cerevisiae |
Align length |
73 |
Score (bit) |
32.7 |
E-value |
0.71 |
Report |
BLASTX 2.2.19 [Nov-02-2008]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402.
Query= BP918399|Adiantum capillus-veneris mRNA, clone: YMU001_000113_A10. (446 letters)
Database: uniprot_sprot.fasta 412,525 sequences; 148,809,765 total letters
Searching..................................................done
Score E Sequences producing significant alignments: (bits) Value
sp|Q07990|YL042_YEAST Cell wall protein YLR042C OS=Saccharomyces... 33 0.71 sp|P16766|UL35_HCMVA Protein UL35 OS=Human cytomegalovirus (stra... 26 2.6 sp|P05716|RT14_VICFA Ribosomal protein S14, mitochondrial OS=Vic... 31 2.7 sp|P26873|RT14_MARPO Ribosomal protein S14, mitochondrial OS=Mar... 30 3.5 sp|P31362|PO2F3_MOUSE POU domain, class 2, transcription factor ... 30 6.0 sp|Q8TFG4|YL54_SCHPO Uncharacterized protein PB18E9.04c OS=Schiz... 29 7.8 sp|P58813|APGM_METKA 2,3-bisphosphoglycerate-independent phospho... 29 7.8
>sp|Q07990|YL042_YEAST Cell wall protein YLR042C OS=Saccharomyces cerevisiae GN=YLR042C PE=1 SV=1 Length = 161
Score = 32.7 bits (73), Expect = 0.71 Identities = 25/73 (34%), Positives = 35/73 (47%), Gaps = 5/73 (6%) Frame = +3
Query: 168 TADSEPPVTVSCHTAPRIPSGRGSGMQ--APLPSSDRNNAHIATVAGTISSSCLP---NN 332 ++ S P VT S T+ S + + PLPSS RN + TISSS + Sbjct: 83 SSSSIPKVTSSVITSINYQSSNSTVVTQFTPLPSSSRNETKSSQTTNTISSSTSTGGVGS 142
Query: 333 VK*CNLFLLIMST 371 VK C F+L++ T Sbjct: 143 VKPCLYFVLMLET 155
>sp|P16766|UL35_HCMVA Protein UL35 OS=Human cytomegalovirus (strain AD169) GN=UL35 PE=3 SV=1 Length = 640
Score = 25.8 bits (55), Expect(2) = 2.6 Identities = 10/30 (33%), Positives = 18/30 (60%) Frame = +2
Query: 320 PPKQRKMMQSLFTYNVHRQEKHTHKKHLRR 409 PP+QR+ M S+ ++ + H++H RR Sbjct: 567 PPRQRRRMVSVTLFSPYSVAYSHHRRHRRR 596
Score = 23.5 bits (49), Expect(2) = 2.6 Identities = 11/35 (31%), Positives = 18/35 (51%) Frame = +3
Query: 219 IPSGRGSGMQAPLPSSDRNNAHIATVAGTISSSCL 323 +PS R S + P+S +A ++ G + SS L Sbjct: 519 LPSARSSSTRTTTPASTYTSAGTSSTTGLLLSSSL 553
>sp|P05716|RT14_VICFA Ribosomal protein S14, mitochondrial OS=Vicia faba GN=RPS14 PE=3 SV=2 Length = 100
Score = 30.8 bits (68), Expect = 2.7 Identities = 20/42 (47%), Positives = 22/42 (52%) Frame = -1
Query: 128 NKALEKLSPSLRNSLFT*VRNXXXXXXXXXFVY*LFRMSRIV 3 +K KLS RNS F VRN VY LFR+SRIV Sbjct: 41 DKLRYKLSKLPRNSSFARVRNRCISTGRPRSVYELFRISRIV 82
>sp|P26873|RT14_MARPO Ribosomal protein S14, mitochondrial OS=Marchantia polymorpha GN=RPS14 PE=3 SV=2 Length = 99
Score = 30.4 bits (67), Expect = 3.5 Identities = 24/51 (47%), Positives = 25/51 (49%), Gaps = 4/51 (7%) Frame = -1
Query: 143 DRP*PNKA----LEKLSPSLRNSLFT*VRNXXXXXXXXXFVY*LFRMSRIV 3 DR PNK KLS RNS T VRN VY LFR+SRIV Sbjct: 31 DRNLPNKIRYEYFFKLSKLPRNSSKTRVRNRCIFTGRPRSVYKLFRISRIV 81
>sp|P31362|PO2F3_MOUSE POU domain, class 2, transcription factor 3 OS=Mus musculus GN=Pou2f3 PE=2 SV=2 Length = 431
Score = 29.6 bits (65), Expect = 6.0 Identities = 19/60 (31%), Positives = 30/60 (50%), Gaps = 1/60 (1%) Frame = +3
Query: 138 SINRVRVPCLTADSEPPVTVSCHTAPRI-PSGRGSGMQAPLPSSDRNNAHIATVAGTISS 314 S+ + VP + + VT SC PS GSG+ A P++ +NN+ A + + SS Sbjct: 355 SLGPLSVPPVHSTMPGTVTSSCSPGNNSRPSSPGSGLHASSPTASQNNSKAAMNSSSSSS 414
>sp|Q8TFG4|YL54_SCHPO Uncharacterized protein PB18E9.04c OS=Schizosaccharomyces pombe GN=SPAPB18E9.04c PE=2 SV=1 Length = 800
Score = 29.3 bits (64), Expect = 7.8 Identities = 21/77 (27%), Positives = 32/77 (41%), Gaps = 9/77 (11%) Frame = +3
Query: 183 PPVTVSCHTAPRIPSGRGSGMQAPL----PSSDRNNAHI-----ATVAGTISSSCLPNNV 335 P + SC T+ IP+G S + P+ P + ++ I +T + +SS LP Sbjct: 223 PTTSTSCTTSTSIPTGGSSSLSTPITPTVPPTSTSSTSIPIPPTSTSSTDTNSSPLPTTS 282
Query: 336 K*CNLFLLIMSTGKKNT 386 C I TG T Sbjct: 283 TSCTTSTSIPPTGNSTT 299
>sp|P58813|APGM_METKA 2,3-bisphosphoglycerate-independent phosphoglycerate mutase OS=Methanopyrus kandleri GN=apgM PE=3 SV=1 Length = 422
Score = 29.3 bits (64), Expect = 7.8 Identities = 13/23 (56%), Positives = 14/23 (60%) Frame = +3
Query: 156 VPCLTADSEPPVTVSCHTAPRIP 224 V CLTAD PV V HTA +P Sbjct: 350 VVCLTADHSTPVAVGDHTADPVP 372
|
TrEMBL (release 39.9) |
Link to BlastX Result : TrEMBL |
tr_hit_id |
A8XCI6 |
Definition |
tr|A8XCI6|A8XCI6_CAEBR Putative uncharacterized protein OS=Caenorhabditis briggsae |
Align length |
68 |
Score (bit) |
38.1 |
E-value |
0.22 |
Report |
BLASTX 2.2.19 [Nov-02-2008]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402.
Query= BP918399|Adiantum capillus-veneris mRNA, clone: YMU001_000113_A10. (446 letters)
Database: uniprot_trembl.fasta 7,341,751 sequences; 2,391,615,440 total letters
Searching..................................................done
Score E Sequences producing significant alignments: (bits) Value
tr|A8XCI6|A8XCI6_CAEBR Putative uncharacterized protein OS=Caeno... 38 0.22 tr|Q5MA47|Q5MA47_TOBAC Putative uncharacterized protein orf121a ... 38 0.28 tr|B6K9I4|B6K9I4_TOXGO Putative uncharacterized protein OS=Toxop... 28 0.53 tr|B0XDT1|B0XDT1_CULQU Dynamnin-like protein OS=Culex quinquefas... 33 5.3 tr|A1DBC4|A1DBC4_NEOFI Peroxisomal membrane protein (Pex13), put... 33 7.0 tr|B5VMX5|B5VMX5_YEAS6 YLR042Cp-like protein OS=Saccharomyces ce... 33 9.1 tr|B3LT13|B3LT13_YEAS1 Putative uncharacterized protein OS=Sacch... 33 9.1 tr|A7A0U7|A7A0U7_YEAS7 Conserved protein OS=Saccharomyces cerevi... 33 9.1
>tr|A8XCI6|A8XCI6_CAEBR Putative uncharacterized protein OS=Caenorhabditis briggsae GN=CBG11242 PE=4 SV=1 Length = 2482
Score = 38.1 bits (87), Expect = 0.22 Identities = 23/68 (33%), Positives = 32/68 (47%), Gaps = 5/68 (7%) Frame = +3
Query: 138 SINRVRVPCLTADSEPPVTVSCHTAPRIPSGRGSGMQAPLPSSDRNNAHIATVAGTIS-- 311 S + V P +T+ S P + S T P P G + Q+P PSS + +TV + S Sbjct: 1194 SFSTVSTPSMTSGSTPGASSSLSTQPSTPGGSTASSQSPGPSSSSPSPQTSTVRASTSSP 1253
Query: 312 ---SSCLP 326 SSC P Sbjct: 1254 SQQSSCSP 1261
>tr|Q5MA47|Q5MA47_TOBAC Putative uncharacterized protein orf121a OS=Nicotiana tabacum GN=orf121a PE=4 SV=1 Length = 121
Score = 37.7 bits (86), Expect = 0.28 Identities = 19/29 (65%), Positives = 22/29 (75%) Frame = +3
Query: 27 LIYETKATNENTSVSYSCK*TIS*RRRQL 113 LIY T+AT NTSVSYSCK T+S + QL Sbjct: 20 LIYRTRATRVNTSVSYSCKGTLSWQLGQL 48
>tr|B6K9I4|B6K9I4_TOXGO Putative uncharacterized protein OS=Toxoplasma gondii ME49 GN=TGME49_115290 PE=4 SV=1 Length = 1174
Score = 28.1 bits (61), Expect(2) = 0.53 Identities = 15/44 (34%), Positives = 22/44 (50%) Frame = +2
Query: 311 QLMPPKQRKMMQSLFTYNVHRQEKHTHKKHLRRPRVLLSCRFSL 442 Q P ++ S + R+++ + K H RPR LLSC SL Sbjct: 84 QATPSDIAALLSSTGKERMRRRKRDSEKPHDSRPRDLLSCSASL 127
Score = 27.7 bits (60), Expect(2) = 0.53 Identities = 16/41 (39%), Positives = 23/41 (56%), Gaps = 3/41 (7%) Frame = +3
Query: 150 VRVPCLTADSEPPVTVSCHTAPRIPSGRGS---GMQAPLPS 263 V PC +ADS P + S A +PS + S +++PLPS Sbjct: 23 VSSPCRSADSSPICSFSSSRASCLPSEQDSHEEPLESPLPS 63
>tr|B0XDT1|B0XDT1_CULQU Dynamnin-like protein OS=Culex quinquefasciatus GN=CpipJ_CPIJ017686 PE=4 SV=1 Length = 138
Score = 33.5 bits (75), Expect = 5.3 Identities = 16/41 (39%), Positives = 20/41 (48%) Frame = +3
Query: 138 SINRVRVPCLTADSEPPVTVSCHTAPRIPSGRGSGMQAPLP 260 S+ + VP ++ PP S AP IPS G G PLP Sbjct: 76 SLGSMGVPAISGRGPPPAPSSARPAPAIPSRPGGGNVPPLP 116
>tr|A1DBC4|A1DBC4_NEOFI Peroxisomal membrane protein (Pex13), putative OS=Neosartorya fischeri (strain ATCC 1020 / DSM 3700 / NRRL 181) GN=NFIA_097930 PE=4 SV=1 Length = 465
Score = 33.1 bits (74), Expect = 7.0 Identities = 15/49 (30%), Positives = 27/49 (55%) Frame = -2
Query: 283 WALLRSEEGRGACIPEPLPDGMRGAV*QETVTGGSESAVRQGTLTRLID 137 W R+ +GR +P P + ++ Q+ +T GSE+ R T+T +I+ Sbjct: 386 WWRCRARDGRVGYLPGPYLETIQRRPAQQAITSGSEAGSRSNTMTSVIE 434
>tr|B5VMX5|B5VMX5_YEAS6 YLR042Cp-like protein OS=Saccharomyces cerevisiae (strain AWRI1631) GN=AWRI1631_120870 PE=4 SV=1 Length = 161
Score = 32.7 bits (73), Expect = 9.1 Identities = 25/73 (34%), Positives = 35/73 (47%), Gaps = 5/73 (6%) Frame = +3
Query: 168 TADSEPPVTVSCHTAPRIPSGRGSGMQ--APLPSSDRNNAHIATVAGTISSSCLP---NN 332 ++ S P VT S T+ S + + PLPSS RN + TISSS + Sbjct: 83 SSSSIPKVTSSVITSINYQSSNSTVVTQFTPLPSSSRNETKSSQTTNTISSSTSTGGVGS 142
Query: 333 VK*CNLFLLIMST 371 VK C F+L++ T Sbjct: 143 VKPCLYFVLMLET 155
>tr|B3LT13|B3LT13_YEAS1 Putative uncharacterized protein OS=Saccharomyces cerevisiae (strain RM11-1a) GN=SCRG_05028 PE=4 SV=1 Length = 161
Score = 32.7 bits (73), Expect = 9.1 Identities = 25/73 (34%), Positives = 35/73 (47%), Gaps = 5/73 (6%) Frame = +3
Query: 168 TADSEPPVTVSCHTAPRIPSGRGSGMQ--APLPSSDRNNAHIATVAGTISSSCLP---NN 332 ++ S P VT S T+ S + + PLPSS RN + TISSS + Sbjct: 83 SSSSIPKVTSSVITSINYQSSNSTVVTQFTPLPSSSRNETKSSQTTNTISSSTSTGGVGS 142
Query: 333 VK*CNLFLLIMST 371 VK C F+L++ T Sbjct: 143 VKPCLYFVLMLET 155
>tr|A7A0U7|A7A0U7_YEAS7 Conserved protein OS=Saccharomyces cerevisiae (strain YJM789) GN=SCY_3621 PE=4 SV=1 Length = 161
Score = 32.7 bits (73), Expect = 9.1 Identities = 25/73 (34%), Positives = 35/73 (47%), Gaps = 5/73 (6%) Frame = +3
Query: 168 TADSEPPVTVSCHTAPRIPSGRGSGMQ--APLPSSDRNNAHIATVAGTISSSCLP---NN 332 ++ S P VT S T+ S + + PLPSS RN + TISSS + Sbjct: 83 SSSSIPKVTSSVITSINYQSSNSTVVTQFTPLPSSSRNETKSSQTTNTISSSTSTGGVGS 142
Query: 333 VK*CNLFLLIMST 371 VK C F+L++ T Sbjct: 143 VKPCLYFVLMLET 155
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