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NBDC - LSDB Archive
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AcEST | BlastX Result : Swiss-Prot | BlastX Result : TrEMBL | AcESTcontig | About Libraries
BP918403
Clone id YMU001_000113_B03
Library
Length 531
Definition Adiantum capillus-veneris mRNA. clone: YMU001_000113_B03.
Accession
Tissue type prothallium
Developmental stage -
Contig ID -
Sequence 
CTCCTCCCTCCTCTCTCCCTCTCCAAATTGATGTTCCGTCGCTTGTCCATCTGATCATAA
ACTGGCAACCTCTGAAACAACCATGTTGCCCAATTGAGTGCCACATTCCTCTCCGCATTG
AGAAAAGGTTGGAAAGCATCTGTGCTCATGTATGTTGTCTTCTCGATGATACATACTCTA
TCCAAGTACCACTTCACATGCCAATGTTGCAACAGATCGGCGCGAGGGCGCCCCAAACAT
GAGTTGATCTATAATCCTCACCATCGCCCTCGCCCTGTTGTAGCATCCCAAAGACCTCCT
CAGCATTTGTAGCCGCTCCCCAAACCTTCCATGGTCTATTCGCAAAGTCCCACAGCCCAA
TCTTTTTCAGCCAAGCCGCTGTGCTAGGATTCCCAAATCAATTTGTGCTTCAACATGAGT
GCTCTAAGGCTCCTCCCCTCCTTCATCAACATCAATCACATGAGCTGTAACAGCCGCCTG
CGCAATTCCCATCTTTGCCTTAGCCTCCTCTTTTGACTTCCGTGGATTGAG
■■Homology search results ■■ -
sp_hit_id O83485
Definition sp|O83485|UVRC_TREPA UvrABC system protein C OS=Treponema pallidum
Align length 35
Score (bit) 30.8
E-value 4.3
Report 
BLASTX 2.2.19 [Nov-02-2008]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= BP918403|Adiantum capillus-veneris mRNA, clone:
YMU001_000113_B03.
         (531 letters)

Database: uniprot_sprot.fasta 
           412,525 sequences; 148,809,765 total letters

Searching..................................................done



                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

sp|O83485|UVRC_TREPA UvrABC system protein C OS=Treponema pallid...    31   4.3  
sp|P06599|EXTN_DAUCA Extensin OS=Daucus carota PE=2 SV=1               31   4.3  
sp|O35485|VEGFB_RAT Vascular endothelial growth factor B OS=Ratt...    30   5.6  
sp|Q9LK32|Y3721_ARATH Uncharacterized protein At3g27210 OS=Arabi...    30   7.3  
sp|P49766|VEGFB_MOUSE Vascular endothelial growth factor B OS=Mu...    30   7.3  
sp|Q5KHY3|NST1_CRYNE Stress response protein NST1 OS=Cryptococcu...    30   7.3  
sp|P97879|GRIP1_RAT Glutamate receptor-interacting protein 1 OS=...    30   7.3  
sp|O04532|FH8_ARATH Formin-like protein 8 OS=Arabidopsis thalian...    30   7.3  
sp|Q09575|YRD6_CAEEL Uncharacterized protein K02A2.6 OS=Caenorha...    30   9.4  
sp|Q2UXR0|VM1_ECHOC Zinc metalloproteinase-disintegrin Eoc1 OS=E...    30   9.4  

>sp|O83485|UVRC_TREPA UvrABC system protein C OS=Treponema pallidum
           GN=uvrC PE=3 SV=1
          Length = 691

 Score = 30.8 bits (68), Expect = 4.3
 Identities = 14/35 (40%), Positives = 17/35 (48%)
 Frame = +1

Query: 163 SMIHTLSKYHFTCQCCNRSARGRPKHELIYNPHHR 267
           S +HTL K H  C     +    P HE  + PHHR
Sbjct: 381 STMHTLQKAHDACTASEGTRENTP-HESAHTPHHR 414


>sp|P06599|EXTN_DAUCA Extensin OS=Daucus carota PE=2 SV=1
          Length = 306

 Score = 30.8 bits (68), Expect = 4.3
 Identities = 15/40 (37%), Positives = 16/40 (40%)
 Frame = +1

Query: 232 PKHELIYNPHHRPRPVVASQRPPQHL*PLPKPSMVYSQSP 351
           P H   Y     P PV  S  PP+H  P P P   Y   P
Sbjct: 217 PVHHYKYKSPPPPTPVYKSPPPPEHSPPPPTPVYKYKSPP 256


>sp|O35485|VEGFB_RAT Vascular endothelial growth factor B OS=Rattus
           norvegicus GN=Vegfb PE=2 SV=3
          Length = 207

 Score = 30.4 bits (67), Expect = 5.6
 Identities = 17/66 (25%), Positives = 26/66 (39%), Gaps = 8/66 (12%)
 Frame = +1

Query: 190 HFTCQCCNRSARGRPKHELIYNPHHRPRP--------VVASQRPPQHL*PLPKPSMVYSQ 345
           H  C+C  +      K + +  PHHRP+P           +  P   + P P P      
Sbjct: 119 HSQCECRPKRKESAVKPDRVAIPHHRPQPRSVLSWDSAPGASSPADIIHPTPAPGPSAHA 178

Query: 346 SPTAQS 363
           +P+A S
Sbjct: 179 APSAVS 184


>sp|Q9LK32|Y3721_ARATH Uncharacterized protein At3g27210
           OS=Arabidopsis thaliana GN=Y-2 PE=1 SV=1
          Length = 234

 Score = 30.0 bits (66), Expect = 7.3
 Identities = 10/18 (55%), Positives = 12/18 (66%)
 Frame = -1

Query: 165 REDNIHEHRCFPTFSQCG 112
           ++ N H HRC P FS CG
Sbjct: 197 KKSNWHHHRCLPGFSSCG 214


>sp|P49766|VEGFB_MOUSE Vascular endothelial growth factor B OS=Mus
           musculus GN=Vegfb PE=1 SV=2
          Length = 207

 Score = 30.0 bits (66), Expect = 7.3
 Identities = 16/64 (25%), Positives = 25/64 (39%), Gaps = 8/64 (12%)
 Frame = +1

Query: 190 HFTCQCCNRSARGRPKHELIYNPHHRPRP--------VVASQRPPQHL*PLPKPSMVYSQ 345
           H  C+C  +      K + +  PHHRP+P           +  P   + P P P      
Sbjct: 119 HSQCECRPKKKESAVKPDRVAIPHHRPQPRSVPGWDSTPGASSPADIIHPTPAPGSSARL 178

Query: 346 SPTA 357
           +P+A
Sbjct: 179 APSA 182


>sp|Q5KHY3|NST1_CRYNE Stress response protein NST1 OS=Cryptococcus
           neoformans GN=NST1 PE=3 SV=1
          Length = 1353

 Score = 30.0 bits (66), Expect = 7.3
 Identities = 17/39 (43%), Positives = 24/39 (61%)
 Frame = +1

Query: 256 PHHRPRPVVASQRPPQHL*PLPKPSMVYSQSPTAQSFSA 372
           P H+P+P+  SQ+PP  L PLP P+   + +PT  S  A
Sbjct: 318 PTHQPQPL--SQQPPS-LNPLPPPAPASAPTPTPPSSRA 353


>sp|P97879|GRIP1_RAT Glutamate receptor-interacting protein 1
           OS=Rattus norvegicus GN=Grip1 PE=1 SV=1
          Length = 1112

 Score = 30.0 bits (66), Expect = 7.3
 Identities = 16/38 (42%), Positives = 21/38 (55%)
 Frame = +1

Query: 250 YNPHHRPRPVVASQRPPQHL*PLPKPSMVYSQSPTAQS 363
           +NPHH     V +   P+ L P   P+MV S SPT+ S
Sbjct: 375 HNPHHPDHCRVPALGFPKALTPNSPPAMVSSSSPTSMS 412


>sp|O04532|FH8_ARATH Formin-like protein 8 OS=Arabidopsis thaliana
           GN=FH8 PE=2 SV=1
          Length = 760

 Score = 30.0 bits (66), Expect = 7.3
 Identities = 16/47 (34%), Positives = 20/47 (42%)
 Frame = +1

Query: 223 RGRPKHELIYNPHHRPRPVVASQRPPQHL*PLPKPSMVYSQSPTAQS 363
           R    H +I+N  H+P P V    P     P P PS+   QS    S
Sbjct: 212 RSSTSHSVIHNEDHQPPPQVKQSEPTP---PPPPPSIAVKQSAPTPS 255


>sp|Q09575|YRD6_CAEEL Uncharacterized protein K02A2.6
           OS=Caenorhabditis elegans GN=K02A2.6 PE=2 SV=1
          Length = 1268

 Score = 29.6 bits (65), Expect = 9.4
 Identities = 24/65 (36%), Positives = 35/65 (53%), Gaps = 2/65 (3%)
 Frame = +3

Query: 30  DVPSLVHLIIN--WQPLKQPCCPIECHIPLRIEKRLESICAHVCCLLDDTYSIQVPLHMP 203
           +V S+V L+ N  W+P  +P   IE H  +R   RL+ I  H C LLDD   +   L   
Sbjct: 731 EVSSVVKLVRNDSWKP--KPSTEIEKHW-IRYRDRLKLI--HGCLLLDDRVIVPKSLQKI 785

Query: 204 MLQQI 218
           +L+Q+
Sbjct: 786 VLKQL 790


>sp|Q2UXR0|VM1_ECHOC Zinc metalloproteinase-disintegrin Eoc1
           OS=Echis ocellatus PE=2 SV=1
          Length = 614

 Score = 29.6 bits (65), Expect = 9.4
 Identities = 14/38 (36%), Positives = 21/38 (55%)
 Frame = +2

Query: 302 SICSRSPNLPWSIRKVPQPNLFQPSRCARIPKSICAST 415
           S CSR  N  + I K+PQ  L +PSR   +   +C ++
Sbjct: 375 SNCSREENRRYLINKMPQCILIKPSRTDIVSPPVCGNS 412
tr_hit_id A7SYC3
Definition tr|A7SYC3|A7SYC3_NEMVE Predicted protein OS=Nematostella vectensis
Align length 35
Score (bit) 36.6
E-value 0.81
Report 
BLASTX 2.2.19 [Nov-02-2008]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= BP918403|Adiantum capillus-veneris mRNA, clone:
YMU001_000113_B03.
         (531 letters)

Database: uniprot_trembl.fasta 
           7,341,751 sequences; 2,391,615,440 total letters

Searching..................................................done



                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

tr|A7SYC3|A7SYC3_NEMVE Predicted protein OS=Nematostella vectens...    37   0.81 
tr|Q5KL97|Q5KL97_CRYNE Putative uncharacterized protein OS=Crypt...    35   3.2  
tr|A6T9U4|A6T9U4_KLEP7 Putative protease OS=Klebsiella pneumonia...    34   5.4  
tr|B4MTT6|B4MTT6_DROWI GK23900 OS=Drosophila willistoni GN=GK239...    34   5.4  
tr|A7T3H7|A7T3H7_NEMVE Predicted protein (Fragment) OS=Nematoste...    34   5.4  
tr|B1Z247|B1Z247_BURA4 Xanthine permease OS=Burkholderia ambifar...    33   7.0  
tr|B1FK40|B1FK40_9BURK Xanthine permease OS=Burkholderia ambifar...    33   7.0  
tr|B0LK19|B0LK19_CUCSA Zinc finger-homeodomain protein 1 (Fragme...    33   7.0  
tr|Q0D1Q3|Q0D1Q3_ASPTN Putative uncharacterized protein OS=Asper...    33   9.0  
tr|Q0BA61|Q0BA61_BURCM Uracil-xanthine permease OS=Burkholderia ...    33   9.2  
tr|B7KJZ7|B7KJZ7_9CHRO Putative uncharacterized protein OS=Cyano...    33   9.2  
tr|B1T3B3|B1T3B3_9BURK Xanthine permease OS=Burkholderia ambifar...    33   9.2  

>tr|A7SYC3|A7SYC3_NEMVE Predicted protein OS=Nematostella vectensis
           GN=v1g137777 PE=4 SV=1
          Length = 169

 Score = 36.6 bits (83), Expect = 0.81
 Identities = 15/35 (42%), Positives = 19/35 (54%)
 Frame = -3

Query: 385 STAAWLKKIGLWDFANRPWKVWGAATNAEEVFGML 281
           S   W +   +WD   R WKVWG  T   +V+GML
Sbjct: 121 SMGMWTRYGKVWDMVTRYWKVWGMVTRYWKVWGML 155



 Score = 35.4 bits (80), Expect = 1.8
 Identities = 19/45 (42%), Positives = 24/45 (53%), Gaps = 1/45 (2%)
 Frame = -3

Query: 355 LWDFANRPWKVWGAATNAEEVFGML-QQGEGDGEDYRSTHVWGAL 224
           +WD   R WKVWG  T   +V+GML + G+      R   VWG L
Sbjct: 8   VWDMVTRYWKVWGMVTRYWKVWGMLTRYGKVWDMLTRYGKVWGML 52


>tr|Q5KL97|Q5KL97_CRYNE Putative uncharacterized protein
           OS=Cryptococcus neoformans GN=CNBC6970 PE=4 SV=1
          Length = 1033

 Score = 34.7 bits (78), Expect = 3.2
 Identities = 23/60 (38%), Positives = 32/60 (53%), Gaps = 5/60 (8%)
 Frame = +1

Query: 181 SKYHFTC-QCCNRSARGRPKHELIYNPHHRPRPVVAS---QRP-PQHL*PLPKPSMVYSQ 345
           SK  FTC +C  R+A  R + E + + + RP PV+ S    RP P H  P P+P   + Q
Sbjct: 776 SKVDFTCKECQQRAANKRLRIESLTHANSRPIPVIPSPLAPRPTPPHPYPHPRPHSAHQQ 835


>tr|A6T9U4|A6T9U4_KLEP7 Putative protease OS=Klebsiella pneumoniae
           subsp. pneumoniae (strain ATCC 700721 / MGH 78578)
           GN=ydcP PE=4 SV=1
          Length = 653

 Score = 33.9 bits (76), Expect = 5.4
 Identities = 21/67 (31%), Positives = 32/67 (47%)
 Frame = +1

Query: 124 KGWKASVLMYVVFSMIHTLSKYHFTCQCCNRSARGRPKHELIYNPHHRPRPVVASQRPPQ 303
           K WKA+ +  +    + TL    F C+ C     G+ K+ ++  PH  P  +VAS  P  
Sbjct: 588 KSWKATPMQLIHGDEVLTLK---FDCRPCEMHVVGKIKNHILKMPH--PGSIVASVSPDD 642

Query: 304 HL*PLPK 324
            +  LPK
Sbjct: 643 LMKTLPK 649


>tr|B4MTT6|B4MTT6_DROWI GK23900 OS=Drosophila willistoni GN=GK23900
           PE=4 SV=1
          Length = 80

 Score = 33.9 bits (76), Expect = 5.4
 Identities = 15/31 (48%), Positives = 19/31 (61%)
 Frame = +1

Query: 259 HHRPRPVVASQRPPQHL*PLPKPSMVYSQSP 351
           HH P PVV  Q+PP      P P++VY Q+P
Sbjct: 28  HHHPPPVVVVQQPPP-----PPPTVVYQQAP 53


>tr|A7T3H7|A7T3H7_NEMVE Predicted protein (Fragment) OS=Nematostella
           vectensis GN=v1g144336 PE=4 SV=1
          Length = 230

 Score = 33.9 bits (76), Expect = 5.4
 Identities = 29/111 (26%), Positives = 44/111 (39%), Gaps = 4/111 (3%)
 Frame = +1

Query: 172 HTLSKYHFTCQCCNRSARGRPKHELIYNPHHRPRPVVASQRPPQHL*PLPKPSMVYSQSP 351
           H LSK+H  C C   S   RP    + + HHRPR    S +  QH     +P   +   P
Sbjct: 39  HVLSKHHRPCSCQVLSKHHRPCSCQVSSKHHRPRSCHVSSK--QH-----RPCSCHVSCP 91

Query: 352 TAQSFSAKPLC*D----SQINLCFNMSALRLLPSFININHMSCNSRLRNSH 492
                +A     +    S +  C N + L  + S  N     C+ ++ + H
Sbjct: 92  NTTGLAAVMSRLNTTGLSAVRSCLNTTGLAAVSSKHN---RPCSCQVSSKH 139


>tr|B1Z247|B1Z247_BURA4 Xanthine permease OS=Burkholderia ambifaria
           (strain MC40-6) GN=BamMC406_3915 PE=4 SV=1
          Length = 462

 Score = 33.5 bits (75), Expect = 7.0
 Identities = 17/48 (35%), Positives = 26/48 (54%), Gaps = 4/48 (8%)
 Frame = +1

Query: 217 SARGRPKHELIYNPHHRPRPVVASQRPPQHL----*PLPKPSMVYSQS 348
           +A   P H+L+Y P+ RP P+VA     QHL     P+  P ++  Q+
Sbjct: 14  AADADPSHDLVYGPNDRPAPMVAFVAALQHLLAIIVPIVTPGLLICQA 61


>tr|B1FK40|B1FK40_9BURK Xanthine permease OS=Burkholderia ambifaria
           IOP40-10 GN=BamIOP4010DRAFT_4401 PE=4 SV=1
          Length = 462

 Score = 33.5 bits (75), Expect = 7.0
 Identities = 17/48 (35%), Positives = 26/48 (54%), Gaps = 4/48 (8%)
 Frame = +1

Query: 217 SARGRPKHELIYNPHHRPRPVVASQRPPQHL----*PLPKPSMVYSQS 348
           +A   P H+L+Y P+ RP P+VA     QHL     P+  P ++  Q+
Sbjct: 14  AADADPSHDLVYGPNDRPAPMVAFVAALQHLLAIIVPIVTPGLLICQA 61


>tr|B0LK19|B0LK19_CUCSA Zinc finger-homeodomain protein 1 (Fragment)
           OS=Cucumis sativus GN=ZHD1 PE=2 SV=1
          Length = 302

 Score = 33.5 bits (75), Expect = 7.0
 Identities = 17/43 (39%), Positives = 20/43 (46%), Gaps = 3/43 (6%)
 Frame = +1

Query: 232 PKHELIYNPHHR---PRPVVASQRPPQHL*PLPKPSMVYSQSP 351
           P H + Y PHHR   P P +A  R P    P P  S  Y  +P
Sbjct: 119 PTHVIEYQPHHRHHPPPPPLAGNRSPNSASPPPISSSYYPSAP 161


>tr|Q0D1Q3|Q0D1Q3_ASPTN Putative uncharacterized protein
           OS=Aspergillus terreus (strain NIH 2624) GN=ATEG_00131
           PE=4 SV=1
          Length = 282

 Score = 33.1 bits (74), Expect = 9.0
 Identities = 19/67 (28%), Positives = 31/67 (46%), Gaps = 4/67 (5%)
 Frame = +3

Query: 48  HLIINWQPLKQPCCPIECHIPLRIEKRLESICAHVCC----LLDDTYSIQVPLHMPMLQQ 215
           H+ + W P KQ     E  +   +  +LE IC+  C     LL     +Q+PLH+ + + 
Sbjct: 65  HIYLEWYPSKQ-----ELRVLEDVVSQLEGICSKSCVKIHSLLRSDLGVQLPLHISLSRP 119

Query: 216 IGARAPQ 236
           +  R  Q
Sbjct: 120 VVLRTEQ 126


>tr|Q0BA61|Q0BA61_BURCM Uracil-xanthine permease OS=Burkholderia
           ambifaria (strain ATCC BAA-244 / AMMD) GN=Bamb_3408 PE=4
           SV=1
          Length = 462

 Score = 33.1 bits (74), Expect = 9.2
 Identities = 16/43 (37%), Positives = 24/43 (55%), Gaps = 4/43 (9%)
 Frame = +1

Query: 232 PKHELIYNPHHRPRPVVASQRPPQHL----*PLPKPSMVYSQS 348
           P H+L+Y P+ RP P+VA     QHL     P+  P ++  Q+
Sbjct: 19  PSHDLVYGPNDRPAPMVAFVAALQHLLAIIVPIVTPGLLICQA 61