BP918421 |
Clone id |
YMU001_000113_C09 |
Library |
YMU01 |
Length |
541 |
Definition |
Adiantum capillus-veneris mRNA. clone: YMU001_000113_C09. |
Accession |
BP918421 |
Tissue type |
prothallium |
Developmental stage |
- |
Contig ID |
CL2140Contig1 |
Sequence |
AGAGAGAAAAGAATTGAAAATATAACATCAGTTTCCATTAACAAACTTAAACCAGCAAAA CAACCTTGATCATAGTTCTCTGCAGCGCAACTACTACTTGTCGTAAGCTACAAATTTTCC AACAGTCTAACTACTTCTTCTCTAAAGGTACAAAGGGCATATTTTCCTTCCCGACATACA CATTAACTACGCAATTTGACATGTTGCAAACTGGAGACACTGACACGGGAGGATTTCGAC CACCAATACCTAGAGCTCTAGCCGACTCAGGCGGAAGCTCATACAGAAGGCTCTCATCAA AAGGAATGTCTTCCCCTATTCTGTAGGGAACAAAAGGCACACTTGGCTTCAAATGACCAC CACCTGAACCAGCAATACCAATTGAACATCCTTTACCAGCAACACCAACTTCCTTACTGC CACCTGAACCAACAATACCAGTTGAACATCCTTTACCAGTTGAACCAATATTACCAGCTG AAGCACAAGAACCACAACCAGAACTACCAACATCAACTGACATATCAACACTAGAAGCGG T |
■■Homology search results ■■ |
- |
Swiss-Prot (release 56.9) |
Link to BlastX Result : Swiss-Prot |
sp_hit_id |
Q8R2K4 |
Definition |
sp|Q8R2K4|TAF6L_MOUSE TAF6-like RNA polymerase II p300/CBP-associated factor-associated factor 65 kDa subunit 6L OS=Mus musculus |
Align length |
35 |
Score (bit) |
34.3 |
E-value |
0.38 |
Report |
|
TrEMBL (release 39.9) |
Link to BlastX Result : TrEMBL |
tr_hit_id |
Q02QP5 |
Definition |
tr|Q02QP5|Q02QP5_PSEAB Heme acquisition protein HasAp OS=Pseudomonas aeruginosa (strain UCBPP-PA14) |
Align length |
66 |
Score (bit) |
35.4 |
E-value |
1.8 |
Report |
BLASTX 2.2.19 [Nov-02-2008]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402.
Query= BP918421|Adiantum capillus-veneris mRNA, clone: YMU001_000113_C09. (528 letters)
Database: uniprot_trembl.fasta 7,341,751 sequences; 2,391,615,440 total letters
Searching..................................................done
Score E Sequences producing significant alignments: (bits) Value
tr|Q02QP5|Q02QP5_PSEAB Heme acquisition protein HasAp OS=Pseudom... 35 1.8 tr|O69756|O69756_PSEAE Heme acquisition protein HasAp OS=Pseudom... 35 1.8 tr|B7V115|B7V115_PSEAE Heme acquisition protein HasAp OS=Pseudom... 35 1.8 tr|A3LDK2|A3LDK2_PSEAE Heme acquisition protein HasAp OS=Pseudom... 35 1.8 tr|A3KX77|A3KX77_PSEAE Heme acquisition protein HasAp OS=Pseudom... 35 1.8 tr|A7T2G6|A7T2G6_NEMVE Predicted protein (Fragment) OS=Nematoste... 35 2.3 tr|A2EC56|A2EC56_TRIVA Putative uncharacterized protein OS=Trich... 35 2.3 tr|A6V220|A6V220_PSEA7 Heme acquisition protein HasAp OS=Pseudom... 34 5.2 tr|B6L3A3|B6L3A3_BRAFL Putative uncharacterized protein (Fragmen... 34 5.2 tr|A3Y5J9|A3Y5J9_9GAMM Putative uncharacterized protein OS=Marin... 33 6.9 tr|Q1EDB4|Q1EDB4_9CYAN HctB OS=Lyngbya majuscula PE=4 SV=1 33 9.0
>tr|Q02QP5|Q02QP5_PSEAB Heme acquisition protein HasAp OS=Pseudomonas aeruginosa (strain UCBPP-PA14) GN=hasAp PE=4 SV=1 Length = 205
Score = 35.4 bits (80), Expect = 1.8 Identities = 25/66 (37%), Positives = 33/66 (50%), Gaps = 4/66 (6%) Frame = +2
Query: 146 IFSFPTYTLTTQFDMLQTGDTDTGGFRPPIPRALADSGG----SSYRRLSSKGMSSPIL* 313 +FS P++TL + D + GDT TGG A SGG S S+ G+ SPI Sbjct: 77 LFSNPSHTLWGKLDSIALGDTLTGG---------ASSGGYALDSQEVSFSNLGLDSPIAQ 127
Query: 314 GTKGTL 331 G GT+ Sbjct: 128 GRDGTV 133
>tr|O69756|O69756_PSEAE Heme acquisition protein HasAp OS=Pseudomonas aeruginosa GN=hasAp PE=4 SV=1 Length = 205
Score = 35.4 bits (80), Expect = 1.8 Identities = 25/66 (37%), Positives = 33/66 (50%), Gaps = 4/66 (6%) Frame = +2
Query: 146 IFSFPTYTLTTQFDMLQTGDTDTGGFRPPIPRALADSGG----SSYRRLSSKGMSSPIL* 313 +FS P++TL + D + GDT TGG A SGG S S+ G+ SPI Sbjct: 77 LFSNPSHTLWGKLDSIALGDTLTGG---------ASSGGYALDSQEVSFSNLGLDSPIAQ 127
Query: 314 GTKGTL 331 G GT+ Sbjct: 128 GRDGTV 133
>tr|B7V115|B7V115_PSEAE Heme acquisition protein HasAp OS=Pseudomonas aeruginosa LESB58 GN=hasAp PE=4 SV=1 Length = 205
Score = 35.4 bits (80), Expect = 1.8 Identities = 25/66 (37%), Positives = 33/66 (50%), Gaps = 4/66 (6%) Frame = +2
Query: 146 IFSFPTYTLTTQFDMLQTGDTDTGGFRPPIPRALADSGG----SSYRRLSSKGMSSPIL* 313 +FS P++TL + D + GDT TGG A SGG S S+ G+ SPI Sbjct: 77 LFSNPSHTLWGKLDSIALGDTLTGG---------ASSGGYALDSQEVSFSNLGLDSPIAQ 127
Query: 314 GTKGTL 331 G GT+ Sbjct: 128 GRDGTV 133
>tr|A3LDK2|A3LDK2_PSEAE Heme acquisition protein HasAp OS=Pseudomonas aeruginosa 2192 GN=PA2G_02821 PE=4 SV=1 Length = 205
Score = 35.4 bits (80), Expect = 1.8 Identities = 25/66 (37%), Positives = 33/66 (50%), Gaps = 4/66 (6%) Frame = +2
Query: 146 IFSFPTYTLTTQFDMLQTGDTDTGGFRPPIPRALADSGG----SSYRRLSSKGMSSPIL* 313 +FS P++TL + D + GDT TGG A SGG S S+ G+ SPI Sbjct: 77 LFSNPSHTLWGKLDSIALGDTLTGG---------ASSGGYALDSQEVSFSNLGLDSPIAQ 127
Query: 314 GTKGTL 331 G GT+ Sbjct: 128 GRDGTV 133
>tr|A3KX77|A3KX77_PSEAE Heme acquisition protein HasAp OS=Pseudomonas aeruginosa C3719 GN=PACG_02341 PE=4 SV=1 Length = 205
Score = 35.4 bits (80), Expect = 1.8 Identities = 25/66 (37%), Positives = 33/66 (50%), Gaps = 4/66 (6%) Frame = +2
Query: 146 IFSFPTYTLTTQFDMLQTGDTDTGGFRPPIPRALADSGG----SSYRRLSSKGMSSPIL* 313 +FS P++TL + D + GDT TGG A SGG S S+ G+ SPI Sbjct: 77 LFSNPSHTLWGKLDSIALGDTLTGG---------ASSGGYALDSQEVSFSNLGLDSPIAQ 127
Query: 314 GTKGTL 331 G GT+ Sbjct: 128 GRDGTV 133
>tr|A7T2G6|A7T2G6_NEMVE Predicted protein (Fragment) OS=Nematostella vectensis GN=v1g143109 PE=4 SV=1 Length = 388
Score = 35.0 bits (79), Expect = 2.3 Identities = 16/46 (34%), Positives = 18/46 (39%), Gaps = 10/46 (21%) Frame = -3
Query: 448 NW*RMFNWYCWFR---WQ*GSWCCW*RMFNWYCWFR-------WWS 341 NW + W W R W W CW R W CW R WW+ Sbjct: 85 NWWACWRWNSWTRSTWWACWRWNCWTRGTWWACWRRNSWTRSTWWA 130
>tr|A2EC56|A2EC56_TRIVA Putative uncharacterized protein OS=Trichomonas vaginalis G3 GN=TVAG_413820 PE=4 SV=1 Length = 360
Score = 35.0 bits (79), Expect = 2.3 Identities = 19/47 (40%), Positives = 27/47 (57%) Frame = +3
Query: 195 KLETLTREDFDHQYLEL*PTQAEAHTEGSHQKECLPLFCREQKAHLA 335 K+ +++ D+ Y EL ++E TE S + LP F REQKAH A Sbjct: 288 KIRNSFQQEIDNYYKELRSVKSELDTERSAIIQSLPSFRREQKAHQA 334
>tr|A6V220|A6V220_PSEA7 Heme acquisition protein HasAp OS=Pseudomonas aeruginosa (strain PA7) GN=hasAp PE=4 SV=1 Length = 205
Score = 33.9 bits (76), Expect = 5.2 Identities = 24/66 (36%), Positives = 32/66 (48%), Gaps = 4/66 (6%) Frame = +2
Query: 146 IFSFPTYTLTTQFDMLQTGDTDTGGFRPPIPRALADSGG----SSYRRLSSKGMSSPIL* 313 +FS P++TL + D + GDT TGG A SGG S + G+ SPI Sbjct: 77 LFSNPSHTLWGKLDSIALGDTLTGG---------ASSGGYALDSQEVSFGNLGLDSPIAQ 127
Query: 314 GTKGTL 331 G GT+ Sbjct: 128 GRDGTV 133
>tr|B6L3A3|B6L3A3_BRAFL Putative uncharacterized protein (Fragment) OS=Branchiostoma floridae GN=BRAFLDRAFT_142103 PE=4 SV=1 Length = 144
Score = 33.9 bits (76), Expect = 5.2 Identities = 17/47 (36%), Positives = 22/47 (46%), Gaps = 1/47 (2%) Frame = -3
Query: 448 NW*RMFNWYCWFRWQ*G-SWCCW*RMFNWYCWFRWWSFEAKCAFCSL 311 +W R+ W W R G SW W R+ W WFR C++C L Sbjct: 70 SWCRLVCWCSWCRLVCGCSWFSWCRLVCWRSWFR---LVCGCSWCRL 113
>tr|A3Y5J9|A3Y5J9_9GAMM Putative uncharacterized protein OS=Marinomonas sp. MED121 GN=MED121_16604 PE=4 SV=1 Length = 277
Score = 33.5 bits (75), Expect = 6.9 Identities = 22/68 (32%), Positives = 31/68 (45%) Frame = -1
Query: 303 GEDIPFDESLLYELPPESARALGIGGRNPPVSVSPVCNMSNCVVNVYVGKENMPFVPLEK 124 G DIP ES E RAL P +VS CN+ + VY+ E +P +P ++ Sbjct: 136 GRDIPTIES-------EFNRALNNVSSEPREAVSAACNILESIFKVYISDEGLP-MPSKQ 187
Query: 123 K*LDCWKI 100 WK+ Sbjct: 188 DLKGVWKV 195
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