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NBDC - LSDB Archive
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AcEST | BlastX Result : Swiss-Prot | BlastX Result : TrEMBL | AcESTcontig | About Libraries
BP918425
Clone id YMU001_000113_D02
Library
Length 396
Definition Adiantum capillus-veneris mRNA. clone: YMU001_000113_D02.
Accession
Tissue type prothallium
Developmental stage -
Contig ID
Sequence 
GACCCAATTGGAGGTTGACACCTCATATCTATAAGATATACCCCGATGCTTTACCATATG
TACATGTTGTTTCGTTTACACAAATCTTTGAGGTAACTATAAAATCTGTACATGGCAAAG
GAAACTTTTAAAGCCCATTCGCCGAATGGAGATGATCCATATCAGCAGCAATCTCCATTC
TCCTTATGCTTCGACTCACACTTCGGTGATGGCAGCATTCCATGATCAGACGAGCCCCCG
TCCCCAAGCCAAGAACAACTAGTACACCAATGATTATATTCACAGGAAGAGCAGAGGCCC
CCAAGTAATATGATATTAGAACATCAAACATCAGCCCTGCTACAAGGATCAGAAGTGCAG
CCACGAGCGGATGGAATTGTCCCCTTCCCTGCCATC
■■Homology search results ■■ -
sp_hit_id P23085
Definition sp|P23085|HVC2_HETFR Ig heavy chain C region (Fragment) OS=Heterodontus francisci
Align length 54
Score (bit) 33.1
E-value 0.44
Report 
BLASTX 2.2.19 [Nov-02-2008]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= BP918425|Adiantum capillus-veneris mRNA, clone:
YMU001_000113_D02.
         (396 letters)

Database: uniprot_sprot.fasta 
           412,525 sequences; 148,809,765 total letters

Searching..................................................done



                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

sp|P23085|HVC2_HETFR Ig heavy chain C region (Fragment) OS=Heter...    33   0.44 
sp|P11378|STP2_MOUSE Nuclear transition protein 2 OS=Mus musculu...    33   0.58 
sp|Q87012|CAPSD_SCSVF Capsid protein OS=Subterranean clover stun...    30   3.7  
sp|Q55FG3|VP13C_DICDI Putative vacuolar protein sorting-associat...    30   3.7  
sp|Q54QC0|MYBU_DICDI Myb-like protein U OS=Dictyostelium discoid...    30   4.9  
sp|P23084|HVC1_HETFR Ig heavy chain C region (Fragment) OS=Heter...    30   4.9  
sp|P98157|LRP1_CHICK Low-density lipoprotein receptor-related pr...    29   6.4  
sp|P25391|LAMA1_HUMAN Laminin subunit alpha-1 OS=Homo sapiens GN...    29   6.4  
sp|P23087|HVCS_HETFR Ig heavy chain C region, secreted form OS=H...    29   6.4  
sp|P23088|HVCM_HETFR Ig heavy chain C region, membrane-bound for...    29   6.4  
sp|P23086|HVC3_HETFR Ig heavy chain C region (Fragment) OS=Heter...    29   6.4  
sp|P82279|CRUM1_HUMAN Crumbs homolog 1 OS=Homo sapiens GN=CRB1 P...    29   6.4  
sp|P15196|SHBG_RABIT Sex hormone-binding globulin OS=Oryctolagus...    29   8.3  

>sp|P23085|HVC2_HETFR Ig heavy chain C region (Fragment)
           OS=Heterodontus francisci PE=2 SV=1
          Length = 438

 Score = 33.1 bits (74), Expect = 0.44
 Identities = 19/54 (35%), Positives = 25/54 (46%)
 Frame = -2

Query: 296 LCSSCEYNHWCTSCSWLGDGGSSDHGMLPSPKCESKHKENGDCC*YGSSPFGEW 135
           LCS  +++    + SWL DG   D G + SP CE     N       + P GEW
Sbjct: 129 LCSIIDFHPESITVSWLKDGQPMDSGFVTSPTCEV--NGNFSATSRLTVPAGEW 180


>sp|P11378|STP2_MOUSE Nuclear transition protein 2 OS=Mus musculus
           GN=Tnp2 PE=2 SV=2
          Length = 117

 Score = 32.7 bits (73), Expect = 0.58
 Identities = 16/36 (44%), Positives = 18/36 (50%)
 Frame = -2

Query: 293 CSSCEYNHWCTSCSWLGDGGSSDHGMLPSPKCESKH 186
           C+ C  +H C SCS  G  GSS     PSP    KH
Sbjct: 29  CNQCTCSHHCRSCSQAGHAGSSSS---PSPGPPMKH 61


>sp|Q87012|CAPSD_SCSVF Capsid protein OS=Subterranean clover stunt
           virus (strain F) GN=C5 PE=3 SV=1
          Length = 169

 Score = 30.0 bits (66), Expect = 3.7
 Identities = 15/37 (40%), Positives = 23/37 (62%), Gaps = 4/37 (10%)
 Frame = +1

Query: 277 YSQEEQRPPSNMILEHQTSAL----LQGSEVQPRADG 375
           YS+   +PPS+ ++ H  S L    + G+EV+P ADG
Sbjct: 18  YSRIAYKPPSSKVVSHVESVLNKRDVTGAEVKPFADG 54


>sp|Q55FG3|VP13C_DICDI Putative vacuolar protein sorting-associated
            protein 13C OS=Dictyostelium discoideum GN=tipC PE=3 SV=1
          Length = 3848

 Score = 30.0 bits (66), Expect = 3.7
 Identities = 13/42 (30%), Positives = 19/42 (45%)
 Frame = +2

Query: 158  HISSNLHSPYASTHTSVMAAFHDQTSPRPQAKNN*YTNDYIH 283
            HI +    P   T T  +   H+ TS +P    N YT ++ H
Sbjct: 2722 HIGAQTIDPAGQTPTKQIETIHESTSMKPTDSRNWYTKEWNH 2763


>sp|Q54QC0|MYBU_DICDI Myb-like protein U OS=Dictyostelium discoideum
            GN=mybU PE=4 SV=1
          Length = 2381

 Score = 29.6 bits (65), Expect = 4.9
 Identities = 15/36 (41%), Positives = 20/36 (55%)
 Frame = +3

Query: 234  APVPKPRTTSTPMIIFTGRAEAPK*YDIRTSNISPA 341
            +P+PKP T+ST   + T    +     I TSN SPA
Sbjct: 1714 SPIPKPTTSSTTYPVTTSNPSSKPQTPIPTSNKSPA 1749


>sp|P23084|HVC1_HETFR Ig heavy chain C region (Fragment)
           OS=Heterodontus francisci PE=2 SV=1
          Length = 370

 Score = 29.6 bits (65), Expect = 4.9
 Identities = 11/35 (31%), Positives = 20/35 (57%)
 Frame = -2

Query: 296 LCSSCEYNHWCTSCSWLGDGGSSDHGMLPSPKCES 192
           +CS  +++    + +WL DG   + G + SP CE+
Sbjct: 61  VCSIIDFHPEAITVNWLKDGHPMESGFVTSPACET 95


>sp|P98157|LRP1_CHICK Low-density lipoprotein receptor-related protein
            1 OS=Gallus gallus GN=LRP1 PE=2 SV=1
          Length = 4543

 Score = 29.3 bits (64), Expect = 6.4
 Identities = 17/64 (26%), Positives = 28/64 (43%)
 Frame = -2

Query: 359  CTSDPCSRADV*CSNIILLGGLCSSCEYNHWCTSCSWLGDGGSSDHGMLPSPKCESKHKE 180
            CT  PCS ++  C+N   + G    C+ +H C         GS +   +P  + +    +
Sbjct: 3567 CTPRPCSESEFSCANGRCIAGRW-KCDGDHDCAD-------GSDEKDCIPRCEFDQYQCK 3618

Query: 179  NGDC 168
            NG C
Sbjct: 3619 NGHC 3622


>sp|P25391|LAMA1_HUMAN Laminin subunit alpha-1 OS=Homo sapiens
            GN=LAMA1 PE=1 SV=1
          Length = 3075

 Score = 29.3 bits (64), Expect = 6.4
 Identities = 15/53 (28%), Positives = 21/53 (39%), Gaps = 7/53 (13%)
 Frame = -2

Query: 302  GGLCSSCEYNHW-------CTSCSWLGDGGSSDHGMLPSPKCESKHKENGDCC 165
            GG C  CE  HW       C +C+    G +     + +  C+ K K  G  C
Sbjct: 1022 GGKCEECEDGHWGYDAEVGCQACNCSLVGSTHHRCDVVTGHCQCKSKFGGRAC 1074


>sp|P23087|HVCS_HETFR Ig heavy chain C region, secreted form
           OS=Heterodontus francisci PE=4 SV=1
          Length = 438

 Score = 29.3 bits (64), Expect = 6.4
 Identities = 12/33 (36%), Positives = 18/33 (54%)
 Frame = -2

Query: 296 LCSSCEYNHWCTSCSWLGDGGSSDHGMLPSPKC 198
           LCS  +++    + SWL DG   + G + SP C
Sbjct: 129 LCSIIDFHPESITVSWLKDGQHMESGFVTSPTC 161


>sp|P23088|HVCM_HETFR Ig heavy chain C region, membrane-bound form
           OS=Heterodontus francisci PE=4 SV=1
          Length = 461

 Score = 29.3 bits (64), Expect = 6.4
 Identities = 12/33 (36%), Positives = 18/33 (54%)
 Frame = -2

Query: 296 LCSSCEYNHWCTSCSWLGDGGSSDHGMLPSPKC 198
           LCS  +++    + SWL DG   + G + SP C
Sbjct: 129 LCSIIDFHPESITVSWLKDGQHMESGFVTSPTC 161
tr_hit_id A7QJ16
Definition tr|A7QJ16|A7QJ16_VITVI Chromosome chr2 scaffold_105, whole genome shotgun sequence OS=Vitis vinifera
Align length 73
Score (bit) 45.8
E-value 0.001
Report 
BLASTX 2.2.19 [Nov-02-2008]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= BP918425|Adiantum capillus-veneris mRNA, clone:
YMU001_000113_D02.
         (396 letters)

Database: uniprot_trembl.fasta 
           7,341,751 sequences; 2,391,615,440 total letters

Searching..................................................done



                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

tr|A7QJ16|A7QJ16_VITVI Chromosome chr2 scaffold_105, whole genom...    46   0.001
tr|Q9AV56|Q9AV56_ORYSJ Putative uncharacterized protein OSJNBa00...    45   0.001
tr|B8BHI5|B8BHI5_ORYSI Putative uncharacterized protein OS=Oryza...    45   0.001
tr|Q7XDA5|Q7XDA5_ORYSJ Zinc finger, C3HC4 type family protein, e...    45   0.002
tr|A9PC07|A9PC07_POPTR Putative uncharacterized protein OS=Popul...    45   0.002
tr|Q8LB32|Q8LB32_ARATH Putative uncharacterized protein OS=Arabi...    44   0.004
tr|O64633|O64633_ARATH Expressed protein (At2g45530) (Putative u...    44   0.004
tr|A9TTQ1|A9TTQ1_PHYPA Predicted protein OS=Physcomitrella paten...    43   0.007
tr|B4FM27|B4FM27_MAIZE Putative uncharacterized protein OS=Zea m...    43   0.009
tr|A9RDF2|A9RDF2_PHYPA Predicted protein (Fragment) OS=Physcomit...    35   1.4  
tr|Q869H0|Q869H0_LYMST Voltage-dependent T-type calcium channel ...    35   1.9  
tr|Q22KL3|Q22KL3_TETTH Putative uncharacterized protein OS=Tetra...    34   4.1  
tr|B6IU77|B6IU77_RHOCS Membrane protein, putative OS=Rhodospiril...    33   7.1  
tr|B6L458|B6L458_BRAFL Putative uncharacterized protein OS=Branc...    33   7.1  
tr|Q9Y754|Q9Y754_EMENI Siderophore biosynthesis repressor SREA (...    33   7.1  
tr|Q91XK4|Q91XK4_MOUSE Nuclear transition protein 2 OS=Mus muscu...    33   9.2  
tr|Q6A839|Q6A839_PROAC Tryptophanyl-tRNA synthetase OS=Propionib...    29   9.4  

>tr|A7QJ16|A7QJ16_VITVI Chromosome chr2 scaffold_105, whole genome
           shotgun sequence OS=Vitis vinifera GN=GSVIVT00000470001
           PE=4 SV=1
          Length = 232

 Score = 45.8 bits (107), Expect = 0.001
 Identities = 29/73 (39%), Positives = 35/73 (47%)
 Frame = -3

Query: 391 QGRGQFHPXXXXXXXXXXXLMFDVLISYYLGASALPVNXXXXXXXXXXXGTGARLIMECC 212
           Q RG F P           L+ DVLIS  LG SALPVN           GT  RL +E C
Sbjct: 149 QARGCFKPLWVALSILIGGLLLDVLISIVLGVSALPVNIIIGVIVVLGLGTAIRLALEFC 208

Query: 211 HHRSVSRSIRRME 173
           H  S+ R  +R++
Sbjct: 209 HEWSLRRVSQRVD 221


>tr|Q9AV56|Q9AV56_ORYSJ Putative uncharacterized protein
           OSJNBa0093B11.14 OS=Oryza sativa subsp. japonica
           GN=OSJNBa0093B11.14 PE=4 SV=1
          Length = 396

 Score = 45.4 bits (106), Expect = 0.001
 Identities = 29/76 (38%), Positives = 34/76 (44%)
 Frame = -3

Query: 385 RGQFHPXXXXXXXXXXXLMFDVLISYYLGASALPVNXXXXXXXXXXXGTGARLIMECCHH 206
           RG F P           L+ DVLIS  LG SALPVN           GT  RL +ECC  
Sbjct: 170 RGWFSPLWVAFAILIGGLLLDVLISVSLGVSALPVNIIIGVLIVLGLGTALRLALECCQE 229

Query: 205 RSVSRSIRRMEIAADM 158
               RS+ R+ +   M
Sbjct: 230 WGSRRSMPRLPMDGSM 245


>tr|B8BHI5|B8BHI5_ORYSI Putative uncharacterized protein OS=Oryza
           sativa subsp. indica GN=OsI_34060 PE=4 SV=1
          Length = 269

 Score = 45.4 bits (106), Expect = 0.001
 Identities = 29/76 (38%), Positives = 34/76 (44%)
 Frame = -3

Query: 385 RGQFHPXXXXXXXXXXXLMFDVLISYYLGASALPVNXXXXXXXXXXXGTGARLIMECCHH 206
           RG F P           L+ DVLIS  LG SALPVN           GT  RL +ECC  
Sbjct: 185 RGWFSPLWVAFAILIGGLLLDVLISVSLGVSALPVNIIIGVLIVLGLGTALRLALECCQE 244

Query: 205 RSVSRSIRRMEIAADM 158
               RS+ R+ +   M
Sbjct: 245 WGSRRSMPRLPMDGSM 260


>tr|Q7XDA5|Q7XDA5_ORYSJ Zinc finger, C3HC4 type family protein,
           expressed (Putative uncharacterized protein) OS=Oryza
           sativa subsp. japonica GN=LOC_Os10g34030 PE=4 SV=2
          Length = 317

 Score = 45.1 bits (105), Expect = 0.002
 Identities = 29/78 (37%), Positives = 34/78 (43%)
 Frame = -3

Query: 391 QGRGQFHPXXXXXXXXXXXLMFDVLISYYLGASALPVNXXXXXXXXXXXGTGARLIMECC 212
           Q  G F P           L+ DVLIS  LG SALPVN           GT  RL +ECC
Sbjct: 82  QASGWFSPLWVAFAILIGGLLLDVLISVSLGVSALPVNIIIGVLIVLGLGTALRLALECC 141

Query: 211 HHRSVSRSIRRMEIAADM 158
                 RS+ R+ +   M
Sbjct: 142 QEWGSRRSMPRLPMDGSM 159


>tr|A9PC07|A9PC07_POPTR Putative uncharacterized protein OS=Populus
           trichocarpa PE=2 SV=1
          Length = 253

 Score = 45.1 bits (105), Expect = 0.002
 Identities = 28/71 (39%), Positives = 34/71 (47%)
 Frame = -3

Query: 385 RGQFHPXXXXXXXXXXXLMFDVLISYYLGASALPVNXXXXXXXXXXXGTGARLIMECCHH 206
           RG F P           L+ DVLIS  LG SALPVN           GT  RL +E CH 
Sbjct: 172 RGCFSPLWVAFSILIGGLLLDVLISITLGVSALPVNIIIGVIVVLGLGTALRLALEFCHE 231

Query: 205 RSVSRSIRRME 173
            S  R+++R +
Sbjct: 232 WSFRRAVQRAD 242


>tr|Q8LB32|Q8LB32_ARATH Putative uncharacterized protein
           OS=Arabidopsis thaliana PE=2 SV=1
          Length = 240

 Score = 43.9 bits (102), Expect = 0.004
 Identities = 28/69 (40%), Positives = 33/69 (47%)
 Frame = -3

Query: 385 RGQFHPXXXXXXXXXXXLMFDVLISYYLGASALPVNXXXXXXXXXXXGTGARLIMECCHH 206
           RG F P           LM DVLIS  LG SALPVN           GT  RL +E C+ 
Sbjct: 153 RGCFSPLWVAFSILIGGLMLDVLISITLGVSALPVNIIIGVIVVLGLGTALRLTLEFCYE 212

Query: 205 RSVSRSIRR 179
            S+ R++ R
Sbjct: 213 WSLRRAVHR 221


>tr|O64633|O64633_ARATH Expressed protein (At2g45530) (Putative
           uncharacterized protein At2g45530) OS=Arabidopsis
           thaliana GN=At2g45530 PE=2 SV=1
          Length = 240

 Score = 43.9 bits (102), Expect = 0.004
 Identities = 28/69 (40%), Positives = 33/69 (47%)
 Frame = -3

Query: 385 RGQFHPXXXXXXXXXXXLMFDVLISYYLGASALPVNXXXXXXXXXXXGTGARLIMECCHH 206
           RG F P           LM DVLIS  LG SALPVN           GT  RL +E C+ 
Sbjct: 153 RGCFSPLWVAFSILIGGLMLDVLISITLGVSALPVNIIIGVIVVLGLGTALRLTLEFCYE 212

Query: 205 RSVSRSIRR 179
            S+ R++ R
Sbjct: 213 WSLRRAVHR 221


>tr|A9TTQ1|A9TTQ1_PHYPA Predicted protein OS=Physcomitrella patens
           subsp. patens GN=PHYPADRAFT_97000 PE=4 SV=1
          Length = 672

 Score = 43.1 bits (100), Expect = 0.007
 Identities = 18/47 (38%), Positives = 30/47 (63%)
 Frame = -3

Query: 304 LGASALPVNXXXXXXXXXXXGTGARLIMECCHHRSVSRSIRRMEIAA 164
           +G +A+P+            GT  RL++ECCH R+V RSI++ME+++
Sbjct: 378 IGYAAMPIGFFFGVLVVLGLGTAVRLVLECCHERNVERSIQQMELSS 424


>tr|B4FM27|B4FM27_MAIZE Putative uncharacterized protein OS=Zea mays
           PE=2 SV=1
          Length = 191

 Score = 42.7 bits (99), Expect = 0.009
 Identities = 27/72 (37%), Positives = 31/72 (43%)
 Frame = -3

Query: 391 QGRGQFHPXXXXXXXXXXXLMFDVLISYYLGASALPVNXXXXXXXXXXXGTGARLIMECC 212
           Q  G F P           L+ DVLIS  LG SALPVN           GT  RL +ECC
Sbjct: 104 QASGWFSPLWVAFAILIGGLLLDVLISVSLGVSALPVNIIIGVLIVLGLGTALRLALECC 163

Query: 211 HHRSVSRSIRRM 176
                 R++  M
Sbjct: 164 QEWGSRRNVGNM 175


>tr|A9RDF2|A9RDF2_PHYPA Predicted protein (Fragment)
           OS=Physcomitrella patens subsp. patens
           GN=PHYPADRAFT_112313 PE=4 SV=1
          Length = 160

 Score = 35.4 bits (80), Expect = 1.4
 Identities = 16/45 (35%), Positives = 26/45 (57%)
 Frame = -3

Query: 304 LGASALPVNXXXXXXXXXXXGTGARLIMECCHHRSVSRSIRRMEI 170
           +G +A+P+            GT  RL++ECC  R+V R I++ME+
Sbjct: 104 IGYAAIPIGFIFGVLVVLGLGTFIRLVLECCQERNVQRRIQQMEM 148