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NBDC - LSDB Archive
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AcEST | BlastX Result : Swiss-Prot | BlastX Result : TrEMBL | AcESTcontig | About Libraries
BP918430
Clone id YMU001_000113_D07
Library
Length 550
Definition Adiantum capillus-veneris mRNA. clone: YMU001_000113_D07.
Accession
Tissue type prothallium
Developmental stage -
Contig ID -
Sequence 
GCCTAACCTCATCCCTTTGTTTCGCCGACGATTCTCATTCTCTGCGCACGTTAATCCTAG
TACGCTACTCACCAGTCCTCGAGTCTTCAGCTGAGGTAACCTAACCTAGCTGAAGCTTCT
TTGCGAAGTACTATCGGGTTGTCTACTTGGTTGCGCGATCTCTCCTCCTTCGCTTTTTGG
CACTTTTTCAGGCGCAAAACTTTTTGTCCGTTTGTCACATGCAATGTAACAAGCAAGCTC
CTTCTCGGCTTGAACTGTTTCTCTTCTGCCCGTGACCTGTTTTGAGCTAGGGTGCATAAA
TCTGTTTCTCTTTTAACTCCCCTGTTTCTCATGGCGAAGCTTGCTGCGCAGTGTTGATCA
ACCTTGCCCAATCCTGATCCTAAGTAGATAGGTTGCATGCACAACTGCTGCTCCTGCTTC
ATCAGCCCAACCATTCCCCATACGCTCCAGTGAAATCATCAGCAGCATGATCGCAGAACT
AGCGACAACAGAAATGCCATATGCCAATGGGCATGCCGTTAGCCCAACAGTGAATGGGCA
TGCTAACGAA
■■Homology search results ■■ -
sp_hit_id P31366
Definition sp|P31366|POU1_DANRE POU domain protein 1 OS=Danio rerio
Align length 127
Score (bit) 34.7
E-value 0.32
Report 
BLASTX 2.2.19 [Nov-02-2008]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= BP918430|Adiantum capillus-veneris mRNA, clone:
YMU001_000113_D07.
         (550 letters)

Database: uniprot_sprot.fasta 
           412,525 sequences; 148,809,765 total letters

Searching..................................................done



                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

sp|P31366|POU1_DANRE POU domain protein 1 OS=Danio rerio GN=pou1...    35   0.32 
sp|P56224|POU12_DANRE POU domain protein 12 OS=Danio rerio GN=po...    32   1.6  
sp|P79745|POU23_DANRE POU domain protein ZP-23 OS=Danio rerio GN...    31   4.6  
sp|P20360|ACT_EUPCR Actin, cytoplasmic OS=Euplotes crassus PE=3 ...    31   4.6  
sp|Q9QYM8|CENPH_MOUSE Centromere protein H OS=Mus musculus GN=Ce...    30   5.9  

>sp|P31366|POU1_DANRE POU domain protein 1 OS=Danio rerio GN=pou1
           PE=2 SV=1
          Length = 425

 Score = 34.7 bits (78), Expect = 0.32
 Identities = 29/127 (22%), Positives = 58/127 (45%), Gaps = 10/127 (7%)
 Frame = -2

Query: 459 MISLERMGNGWADEAGAAVVHATYLLRIRIGQG*STLRSKLRHEKQGS*KRN--RFMHPS 286
           M  L+ + N W +EA ++    T + +I         R+ +    +G+ + +  +   PS
Sbjct: 297 MCKLKPLLNKWLEEADSSTGSPTSIDKIAAQGRKRKKRTSIEVSVKGALESHFLKCPKPS 356

Query: 285 SKQVTGRRETVQAEKELACYIACDKRTKS--FAPEKVPK------SEGGEIAQPSRQPDS 130
           ++++T   + +Q EKE+     C++R K     P  VP+      S+ G ++  +  P  
Sbjct: 357 AQEITSLADNLQLEKEVVRVWFCNRRQKEKRMTPPGVPQTPEDVYSQVGNVSADTPPPSM 416

Query: 129 TSQRSFS 109
             +R FS
Sbjct: 417 DCKRMFS 423


>sp|P56224|POU12_DANRE POU domain protein 12 OS=Danio rerio GN=pou12
           PE=2 SV=1
          Length = 437

 Score = 32.3 bits (72), Expect = 1.6
 Identities = 27/126 (21%), Positives = 55/126 (43%), Gaps = 10/126 (7%)
 Frame = -2

Query: 459 MISLERMGNGWADEAGAAVVHATYLLRIRIGQG*STLRSKLRHEKQGS*KRN--RFMHPS 286
           M  L+ + N W +EA +     T + +I         R+ +    +G+ + +  +   PS
Sbjct: 300 MCKLKPLLNKWLEEADSTTGSPTSIDKIAAQGRKRKKRTSIEVSVKGALESHFLKCPKPS 359

Query: 285 SKQVTGRRETVQAEKELACYIACDKRTKS--FAPEKVPK------SEGGEIAQPSRQPDS 130
           ++++T   + +Q EKE+     C++R K     P  VP+      +  G ++  +  P  
Sbjct: 360 AQEITSLADNLQLEKEVVRVWFCNRRQKEKRMTPPGVPQTPEDVYTHAGNVSADTPPPSM 419

Query: 129 TSQRSF 112
             +R F
Sbjct: 420 DCKREF 425


>sp|P79745|POU23_DANRE POU domain protein ZP-23 OS=Danio rerio
           GN=pou23 PE=1 SV=1
          Length = 443

 Score = 30.8 bits (68), Expect = 4.6
 Identities = 23/100 (23%), Positives = 48/100 (48%), Gaps = 4/100 (4%)
 Frame = -2

Query: 459 MISLERMGNGWADEAGAAVVHATYLLRIRIGQG*STLRSKLRHEKQGS*KRN--RFMHPS 286
           M  L+ + N W +EA ++    T + +I         R+ +    +G+ + +  +   PS
Sbjct: 297 MCKLKPLLNKWLEEADSSTGSPTSIDKIAAQGRKRKKRTSIEVSVKGALESHFLKCPKPS 356

Query: 285 SKQVTGRRETVQAEKELACYIACDKRTKS--FAPEKVPKS 172
           ++++T   + +Q EKE+     C++R K     P  VP++
Sbjct: 357 AQEITSLADNLQLEKEVVRVWFCNRRQKEKRMTPPGVPQT 396


>sp|P20360|ACT_EUPCR Actin, cytoplasmic OS=Euplotes crassus PE=3
           SV=1
          Length = 379

 Score = 30.8 bits (68), Expect = 4.6
 Identities = 17/49 (34%), Positives = 24/49 (48%)
 Frame = -2

Query: 279 QVTGRRETVQAEKELACYIACDKRTKSFAPEKVPKSEGGEIAQPSRQPD 133
           + T  +ETV+  KE  CY+A D     +  E     EGGE+ +    PD
Sbjct: 205 ETTAEKETVRDIKEKLCYVADD-----YEAELKKAGEGGELEESYALPD 248


>sp|Q9QYM8|CENPH_MOUSE Centromere protein H OS=Mus musculus GN=Cenph
           PE=2 SV=1
          Length = 241

 Score = 30.4 bits (67), Expect = 5.9
 Identities = 20/76 (26%), Positives = 36/76 (47%)
 Frame = -3

Query: 302 DLCTLAQNRSRAEEKQFKPRRSLLVTLHVTNGQKVLRLKKCQKAKEERSRNQVDNPIVLR 123
           + C   +  S+A E++ + R SLL+ L     Q++L  K      EE++  Q    I+  
Sbjct: 14  EACEEKRGLSQAAEERIEDRISLLLRLRAQTKQQLLEYKSMIDTNEEKTPEQ----IMQE 69

Query: 122 KEASARLGYLS*RLED 75
           K+   ++  L   +ED
Sbjct: 70  KQIEVKIEELENEIED 85
tr_hit_id Q5AS19
Definition tr|Q5AS19|Q5AS19_EMENI Putative uncharacterized protein OS=Emericella nidulans
Align length 87
Score (bit) 38.5
E-value 0.24
Report 
BLASTX 2.2.19 [Nov-02-2008]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= BP918430|Adiantum capillus-veneris mRNA, clone:
YMU001_000113_D07.
         (550 letters)

Database: uniprot_trembl.fasta 
           7,341,751 sequences; 2,391,615,440 total letters

Searching..................................................done



                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

tr|Q5AS19|Q5AS19_EMENI Putative uncharacterized protein OS=Emeri...    39   0.24 
tr|A5EGN9|A5EGN9_BRASB Putative sugar ABC transporter, permease ...    36   1.5  
tr|A4YX99|A4YX99_BRASO Putative sugar ABC transporter, permease ...    35   2.0  
tr|B3DJH8|B3DJH8_DANRE Pou23 protein OS=Danio rerio GN=pou23 PE=...    35   3.4  
tr|A0C6J1|A0C6J1_PARTE Chromosome undetermined scaffold_152, who...    33   7.5  
tr|Q7NWA0|Q7NWA0_CHRVO Putative uncharacterized protein OS=Chrom...    33   10.0 

>tr|Q5AS19|Q5AS19_EMENI Putative uncharacterized protein
           OS=Emericella nidulans GN=AN8911.2 PE=4 SV=1
          Length = 489

 Score = 38.5 bits (88), Expect = 0.24
 Identities = 28/87 (32%), Positives = 40/87 (45%), Gaps = 1/87 (1%)
 Frame = +2

Query: 284 ELGCINLFLF*LPCFSWRSLLRSVDQPCPILILSR*VACTTAAPASSAQPF-PIRSSEII 460
           EL C N+FLF L    W  L+R V +  P+ + S  + C     +S A  +  + SS I+
Sbjct: 84  ELVCFNVFLFGLGNIFWVPLMRVVGKR-PVYLTSMLLLCMMNVWSSRASSYGELLSSRIL 142

Query: 461 SSMIAELATTEMPYANGHAVSPTVNGH 541
           S   A  A   +P      V+P   GH
Sbjct: 143 SGFAAAAADATVPAVVSDMVAPQDRGH 169


>tr|A5EGN9|A5EGN9_BRASB Putative sugar ABC transporter, permease
           protein OS=Bradyrhizobium sp. (strain BTAi1 / ATCC
           BAA-1182) GN=BBta_3226 PE=3 SV=1
          Length = 310

 Score = 35.8 bits (81), Expect = 1.5
 Identities = 41/125 (32%), Positives = 54/125 (43%), Gaps = 2/125 (1%)
 Frame = +1

Query: 7   PHPFVSPTILILCAR*S*YATHQSSSLQLR*PNLAEASLRSTIGLSTWLRDLSSFAFWHF 186
           P+    P +L+  A    + T    SLQ    NL    LR  IG+  ++  LS  AFW+ 
Sbjct: 25  PYLLSLPALLVCIAILVPFVTAAIYSLQRYRLNLPY--LRGFIGVDNYIDFLSDPAFWNT 82

Query: 187 FRRKTFCPFVTCNVTSKLLLGLNCFSSARDLF*ARVHKSVS--LLTPLFLMAKLAAQC*S 360
            R       VT  V ++LLLGL      R     R H +VS  LL PL     +AA    
Sbjct: 83  LRISLVYTAVT--VVAELLLGLGIALLLRRP--TRFHNAVSIMLLLPLMTAPAIAALMWK 138

Query: 361 TLPNP 375
            + NP
Sbjct: 139 LMTNP 143


>tr|A4YX99|A4YX99_BRASO Putative sugar ABC transporter, permease
           protein OS=Bradyrhizobium sp. (strain ORS278)
           GN=BRADO4799 PE=3 SV=1
          Length = 310

 Score = 35.4 bits (80), Expect = 2.0
 Identities = 41/125 (32%), Positives = 54/125 (43%), Gaps = 2/125 (1%)
 Frame = +1

Query: 7   PHPFVSPTILILCAR*S*YATHQSSSLQLR*PNLAEASLRSTIGLSTWLRDLSSFAFWHF 186
           P+    P +L+  A    + T    SLQ    NL    LR  IG+  ++  LS  AFW+ 
Sbjct: 25  PYLLSLPALLVCIAILVPFVTAAVYSLQRYRLNLPY--LRGFIGVDNYIDFLSDPAFWNT 82

Query: 187 FRRKTFCPFVTCNVTSKLLLGLNCFSSARDLF*ARVHKSVS--LLTPLFLMAKLAAQC*S 360
            R       VT  V ++LLLGL      R     R H +VS  LL PL     +AA    
Sbjct: 83  LRISLVYTAVT--VIAELLLGLGIALLLRRP--TRFHNAVSIMLLLPLMTAPAIAALMWK 138

Query: 361 TLPNP 375
            + NP
Sbjct: 139 LMTNP 143


>tr|B3DJH8|B3DJH8_DANRE Pou23 protein OS=Danio rerio GN=pou23 PE=2
           SV=1
          Length = 426

 Score = 34.7 bits (78), Expect = 3.4
 Identities = 29/127 (22%), Positives = 58/127 (45%), Gaps = 10/127 (7%)
 Frame = -2

Query: 459 MISLERMGNGWADEAGAAVVHATYLLRIRIGQG*STLRSKLRHEKQGS*KRN--RFMHPS 286
           M  L+ + N W +EA ++    T + +I         R+ +    +G+ + +  +   PS
Sbjct: 298 MCKLKPLLNKWLEEADSSTGSPTSIDKIAAQGRKRKKRTSIEVSVKGALESHFLKCPKPS 357

Query: 285 SKQVTGRRETVQAEKELACYIACDKRTKS--FAPEKVPK------SEGGEIAQPSRQPDS 130
           ++++T   + +Q EKE+     C++R K     P  VP+      S+ G ++  +  P  
Sbjct: 358 AQEITSLADNLQLEKEVVRVWFCNRRQKEKRMTPPGVPQTPEDVYSQVGNVSADTPPPSM 417

Query: 129 TSQRSFS 109
             +R FS
Sbjct: 418 DCKRMFS 424


>tr|A0C6J1|A0C6J1_PARTE Chromosome undetermined scaffold_152, whole
           genome shotgun sequence OS=Paramecium tetraurelia
           GN=GSPATT00035537001 PE=4 SV=1
          Length = 619

 Score = 33.5 bits (75), Expect = 7.5
 Identities = 16/38 (42%), Positives = 21/38 (55%)
 Frame = -3

Query: 308 ETDLCTLAQNRSRAEEKQFKPRRSLLVTLHVTNGQKVL 195
           E DL +L   R R E+K F P  +L +   + NG KVL
Sbjct: 96  ECDLQSLIDKRKRQEQKNFHPDEALNILKQIVNGYKVL 133


>tr|Q7NWA0|Q7NWA0_CHRVO Putative uncharacterized protein
           OS=Chromobacterium violaceum GN=CV_2090 PE=4 SV=1
          Length = 214

 Score = 33.1 bits (74), Expect = 10.0
 Identities = 18/48 (37%), Positives = 28/48 (58%)
 Frame = +2

Query: 407 AAPASSAQPFPIRSSEIISSMIAELATTEMPYANGHAVSPTVNGHANE 550
           AA AS+A P P   + + ++   E+A    P  NG+A +P  NG+AN+
Sbjct: 83  AAAASAAPPAPENKAALATAPRPEVAAAASPAVNGNA-APAKNGNANQ 129