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NBDC - LSDB Archive
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AcEST | BlastX Result : Swiss-Prot | BlastX Result : TrEMBL | AcESTcontig | About Libraries
BP918435
Clone id YMU001_000113_E01
Library
Length 558
Definition Adiantum capillus-veneris mRNA. clone: YMU001_000113_E01.
Accession
Tissue type prothallium
Developmental stage -
Contig ID -
Sequence 
AATGACAGTGAATCTGGGAAAAATCCAGCTAGTTTTAGAAAGGACACCACTTTGGCTTCA
GGAAATACTAGTATTGCTGCTCCTGATAGTAAGGACAAAATGCACAAGGAAAAGTCACCC
CATGTTGTGATTGGGGATTGGACCAAGCACAGTTTAAGGGTTGGGGTATTTTCATCACCG
AGGCCGCCTTCATTGCTCGGGGATACCACAAGCTTACAGGCTCTTAATCTTGATCCTGGC
AGTCCACATGTTACTGAAGATGTTTACAGAGAATTTAATGAGTTTAAGCAACAAGAGAAG
GCAAAACACGGCAAGCAGCATCGTGAAGACCAAGTAAATGAGCTGAAGTCCTTTAGCAAA
AGCTTAAAAGATCTGGCAGTGGTTAGACAGCACGGAGCTGCCACAACAGGCACTGTTCTT
AAAATAGCAGGTGCATGCGCTCCTCCTGCATCCGCTTTACCTCTTCCAAACATTATCAAC
AACCCTACAAGCATGTTGAGTGGATCTGATTCTTCAGCACCTCAGAATCATTTAGTACCT
CTAAATAAAGGGGCTGAT
■■Homology search results ■■ -
sp_hit_id Q6DFS0
Definition sp|Q6DFS0|TXD14_XENTR Thioredoxin domain-containing protein 14 OS=Xenopus tropicalis
Align length 39
Score (bit) 33.1
E-value 0.96
Report 
BLASTX 2.2.19 [Nov-02-2008]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= BP918435|Adiantum capillus-veneris mRNA, clone:
YMU001_000113_E01.
         (558 letters)

Database: uniprot_sprot.fasta 
           412,525 sequences; 148,809,765 total letters

Searching..................................................done



                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

sp|Q6DFS0|TXD14_XENTR Thioredoxin domain-containing protein 14 O...    33   0.96 
sp|Q9Y4J8|DTNA_HUMAN Dystrobrevin alpha OS=Homo sapiens GN=DTNA ...    32   2.7  
sp|Q12019|MDN1_YEAST Midasin OS=Saccharomyces cerevisiae GN=MDN1...    32   2.8  
sp|O58052|SYV_PYRHO Valyl-tRNA synthetase OS=Pyrococcus horikosh...    31   3.6  
sp|Q9UY55|SYV_PYRAB Valyl-tRNA synthetase OS=Pyrococcus abyssi G...    31   3.6  
sp|Q26263|DPN_DROME Protein deadpan OS=Drosophila melanogaster G...    31   3.6  
sp|Q8U409|SYV_PYRFU Valyl-tRNA synthetase OS=Pyrococcus furiosus...    31   4.7  
sp|Q9D2N4|DTNA_MOUSE Dystrobrevin alpha OS=Mus musculus GN=Dtna ...    30   6.1  
sp|P84060|DTNB_RAT Dystrobrevin beta OS=Rattus norvegicus GN=Dtn...    30   8.0  
sp|O70585|DTNB_MOUSE Dystrobrevin beta OS=Mus musculus GN=Dtnb P...    30   8.0  
sp|Q6HAV4|RF1_BACHK Peptide chain release factor 1 OS=Bacillus t...    30   8.1  
sp|Q630R9|RF1_BACCZ Peptide chain release factor 1 OS=Bacillus c...    30   8.1  
sp|Q812I4|RF1_BACCR Peptide chain release factor 1 OS=Bacillus c...    30   8.1  
sp|Q72XC2|RF1_BACC1 Peptide chain release factor 1 OS=Bacillus c...    30   8.1  
sp|Q81JX1|RF1_BACAN Peptide chain release factor 1 OS=Bacillus a...    30   8.1  
sp|Q9P3K9|LCMT2_NEUCR Leucine carboxyl methyltransferase 2 OS=Ne...    30   8.1  

>sp|Q6DFS0|TXD14_XENTR Thioredoxin domain-containing protein 14
           OS=Xenopus tropicalis GN=txndc14 PE=2 SV=1
          Length = 287

 Score = 33.1 bits (74), Expect = 0.96
 Identities = 17/39 (43%), Positives = 26/39 (66%)
 Frame = +1

Query: 256 EDVYREFNEFKQQEKAKHGKQHREDQVNELKSFSKSLKD 372
           E+V REFN  +  +KAK  ++H+ED +NE   ++ S KD
Sbjct: 249 ENVIREFNLNELYQKAKKIRKHQEDTINE-NEYNDSKKD 286


>sp|Q9Y4J8|DTNA_HUMAN Dystrobrevin alpha OS=Homo sapiens GN=DTNA
           PE=1 SV=1
          Length = 743

 Score = 31.6 bits (70), Expect = 2.7
 Identities = 12/43 (27%), Positives = 22/43 (51%)
 Frame = -3

Query: 211 LWYPRAMKAASVMKIPQPLNCAWSNPQSQHGVTFPCAFCPYYQ 83
           +W P   + A+V  +  P+ C++ + +S  G  + C  C  YQ
Sbjct: 223 VWLPLLHRLANVENVFHPVECSYCHSESMMGFRYRCQQCHNYQ 265


>sp|Q12019|MDN1_YEAST Midasin OS=Saccharomyces cerevisiae GN=MDN1 PE=1
            SV=1
          Length = 4910

 Score = 31.6 bits (70), Expect = 2.8
 Identities = 28/90 (31%), Positives = 38/90 (42%), Gaps = 13/90 (14%)
 Frame = +1

Query: 148  HSLRVGVFSSPRPPSL------------LGDTTSLQALNLD-PGSPHVTEDVYREFNEFK 288
            HSL    F SP+PPS             LGD    Q  N D      +TED   E  E  
Sbjct: 4036 HSLAKNGFCSPQPPSEEVDDKNLQEGTGLGDGEGAQNNNKDVEQDEDLTEDAQNENKE-- 4093

Query: 289  QQEKAKHGKQHREDQVNELKSFSKSLKDLA 378
            QQ+K +   ++ +D V      +  L+DL+
Sbjct: 4094 QQDKDERDDENEDDAVEMEGDMAGELEDLS 4123


>sp|O58052|SYV_PYRHO Valyl-tRNA synthetase OS=Pyrococcus horikoshii
           GN=valS PE=3 SV=2
          Length = 891

 Score = 31.2 bits (69), Expect = 3.6
 Identities = 16/43 (37%), Positives = 26/43 (60%), Gaps = 3/43 (6%)
 Frame = +1

Query: 223 LNLDPGSPHVTEDVYREFNEFKQQEKAKH---GKQHREDQVNE 342
           L L P  PH+TE++Y    + K  EK+ H     ++RED+++E
Sbjct: 691 LLLAPFVPHITEEIYHAIFKEKIGEKSVHLLSWPEYREDRIDE 733


>sp|Q9UY55|SYV_PYRAB Valyl-tRNA synthetase OS=Pyrococcus abyssi
           GN=valS PE=3 SV=1
          Length = 891

 Score = 31.2 bits (69), Expect = 3.6
 Identities = 16/43 (37%), Positives = 26/43 (60%), Gaps = 3/43 (6%)
 Frame = +1

Query: 223 LNLDPGSPHVTEDVYREFNEFKQQEKAKH---GKQHREDQVNE 342
           L L P  PH+TE++Y    + K  EK+ H     ++RED+++E
Sbjct: 691 LLLAPFVPHITEEIYHAMFKDKIGEKSVHLLSWPEYREDRIDE 733


>sp|Q26263|DPN_DROME Protein deadpan OS=Drosophila melanogaster
           GN=dpn PE=1 SV=2
          Length = 435

 Score = 31.2 bits (69), Expect = 3.6
 Identities = 29/100 (29%), Positives = 44/100 (44%), Gaps = 2/100 (2%)
 Frame = +1

Query: 79  APDSKDKMHKEKSPHV--VIGDWTKHSLRVGVFSSPRPPSLLGDTTSLQALNLDPGSPHV 252
           +P S    H E+S      +   +KHS   GVFS+P P S      +  +LNL  GS H 
Sbjct: 317 SPISSISSHCEESRAASPTVDVMSKHSF-AGVFSTPPPTSAETSFNTSGSLNLSAGS-HD 374

Query: 253 TEDVYREFNEFKQQEKAKHGKQHREDQVNELKSFSKSLKD 372
           +    R     +QQ+ +      + D+  E +S   SL +
Sbjct: 375 SSGCSRPLAHLQQQQVSSTSGIAKRDREAEAESSDCSLDE 414


>sp|Q8U409|SYV_PYRFU Valyl-tRNA synthetase OS=Pyrococcus furiosus
           GN=valS PE=3 SV=1
          Length = 891

 Score = 30.8 bits (68), Expect = 4.7
 Identities = 16/43 (37%), Positives = 26/43 (60%), Gaps = 3/43 (6%)
 Frame = +1

Query: 223 LNLDPGSPHVTEDVYREFNEFKQQEKAKH---GKQHREDQVNE 342
           L L P  PH+TE++Y    + K  EK+ H     ++RED+++E
Sbjct: 691 LLLAPFVPHITEELYHHIFKEKIGEKSVHLLQWPEYREDRIDE 733


>sp|Q9D2N4|DTNA_MOUSE Dystrobrevin alpha OS=Mus musculus GN=Dtna
           PE=1 SV=1
          Length = 746

 Score = 30.4 bits (67), Expect = 6.1
 Identities = 12/43 (27%), Positives = 22/43 (51%)
 Frame = -3

Query: 211 LWYPRAMKAASVMKIPQPLNCAWSNPQSQHGVTFPCAFCPYYQ 83
           +W P   + A+V  +  P+ C++ + +S  G  + C  C  YQ
Sbjct: 223 VWLPLLHRLANVENVFHPVECSYCHSESIMGFRYRCQQCHNYQ 265


>sp|P84060|DTNB_RAT Dystrobrevin beta OS=Rattus norvegicus GN=Dtnb
           PE=1 SV=2
          Length = 654

 Score = 30.0 bits (66), Expect = 8.0
 Identities = 12/43 (27%), Positives = 21/43 (48%)
 Frame = -3

Query: 211 LWYPRAMKAASVMKIPQPLNCAWSNPQSQHGVTFPCAFCPYYQ 83
           +W P   + A V  +  P+ C++ + +S  G  + C  C  YQ
Sbjct: 223 VWLPLMHRLAHVENVFHPVECSYCHCESMMGFRYRCQQCHNYQ 265


>sp|O70585|DTNB_MOUSE Dystrobrevin beta OS=Mus musculus GN=Dtnb PE=1
           SV=2
          Length = 700

 Score = 30.0 bits (66), Expect = 8.0
 Identities = 12/43 (27%), Positives = 21/43 (48%)
 Frame = -3

Query: 211 LWYPRAMKAASVMKIPQPLNCAWSNPQSQHGVTFPCAFCPYYQ 83
           +W P   + A V  +  P+ C++ + +S  G  + C  C  YQ
Sbjct: 223 VWLPLMHRLAHVENVFHPVECSYCHCESMMGFRYRCQQCHNYQ 265
tr_hit_id A9TXE8
Definition tr|A9TXE8|A9TXE8_PHYPA Predicted protein OS=Physcomitrella patens subsp. patens
Align length 107
Score (bit) 48.5
E-value 0.0002
Report 
BLASTX 2.2.19 [Nov-02-2008]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= BP918435|Adiantum capillus-veneris mRNA, clone:
YMU001_000113_E01.
         (558 letters)

Database: uniprot_trembl.fasta 
           7,341,751 sequences; 2,391,615,440 total letters

Searching..................................................done



                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

tr|A9TXE8|A9TXE8_PHYPA Predicted protein OS=Physcomitrella paten...    49   2e-04
tr|A9S9P8|A9S9P8_PHYPA Predicted protein OS=Physcomitrella paten...    48   4e-04
tr|A5K0P3|A5K0P3_PLAVI Putative uncharacterized protein OS=Plasm...    36   1.6  
tr|Q0CKK6|Q0CKK6_ASPTN Putative uncharacterized protein OS=Asper...    35   3.6  
tr|Q47JP4|Q47JP4_DECAR Acyltransferase 3 OS=Dechloromonas aromat...    34   4.6  
tr|B3C620|B3C620_9BACE Putative uncharacterized protein OS=Bacte...    34   4.6  
tr|Q59LZ5|Q59LZ5_CANAL Putative uncharacterized protein TOM71 (P...    34   4.7  
tr|A8VZH2|A8VZH2_9BACI Rhodanese domain protein OS=Bacillus sele...    33   8.1  
tr|Q8ILA7|Q8ILA7_PLAF7 Putative uncharacterized protein OS=Plasm...    33   8.1  

>tr|A9TXE8|A9TXE8_PHYPA Predicted protein OS=Physcomitrella patens
           subsp. patens GN=PHYPADRAFT_172528 PE=4 SV=1
          Length = 956

 Score = 48.5 bits (114), Expect = 2e-04
 Identities = 36/107 (33%), Positives = 51/107 (47%)
 Frame = +1

Query: 7   SESGKNPASFRKDTTLASGNTSIAAPDSKDKMHKEKSPHVVIGDWTKHSLRVGVFSSPRP 186
           SE        RK + + SG+TSI         H  K      G  + +S  +G  S    
Sbjct: 471 SEMVLEKLKLRKLSLINSGDTSI---------HSNK------GSGSPYSSPMGRGSPLIS 515

Query: 187 PSLLGDTTSLQALNLDPGSPHVTEDVYREFNEFKQQEKAKHGKQHRE 327
           PS+ GD   ++ALNLDP  P +  +V+R+F EFKQ+ K +  K   E
Sbjct: 516 PSV-GDPAGIKALNLDPSFPQIAPEVHRKFEEFKQKNKMEQVKAQSE 561


>tr|A9S9P8|A9S9P8_PHYPA Predicted protein OS=Physcomitrella patens
           subsp. patens GN=PHYPADRAFT_76576 PE=4 SV=1
          Length = 752

 Score = 47.8 bits (112), Expect = 4e-04
 Identities = 26/61 (42%), Positives = 36/61 (59%)
 Frame = +1

Query: 109 EKSPHVVIGDWTKHSLRVGVFSSPRPPSLLGDTTSLQALNLDPGSPHVTEDVYREFNEFK 288
           EKS H   G  + ++  +    SP    L+GD + ++ALNLDP  P V+ DV REF E+K
Sbjct: 295 EKSKHSSKGSGSPYNSPMAR-GSPLMSPLVGDQSGIKALNLDPSCPQVSADVIREFQEYK 353

Query: 289 Q 291
           Q
Sbjct: 354 Q 354


>tr|A5K0P3|A5K0P3_PLAVI Putative uncharacterized protein
           OS=Plasmodium vivax GN=PVX_084750 PE=4 SV=1
          Length = 866

 Score = 35.8 bits (81), Expect = 1.6
 Identities = 31/119 (26%), Positives = 50/119 (42%)
 Frame = +1

Query: 172 SSPRPPSLLGDTTSLQALNLDPGSPHVTEDVYREFNEFKQQEKAKHGKQHREDQVNELKS 351
           SS +      D T + ALNL+P  P + E    E+  FK   KAK+   +++D+  E + 
Sbjct: 315 SSKKEDGKSADFTGINALNLEPALPRLDEKTRTEWIMFK--NKAKNKIANKKDKSTEKQE 372

Query: 352 FSKSLKDLAVVRQHGAATTGTVLKIXXXXXXXXXXXXXXNIINNPTSMLSGSDSSAPQN 528
           F  + K+      +  +T     K                 INNP S L  ++S+  +N
Sbjct: 373 FITAAKEFNEKLANKMSTHSQESKNEGNSDQLE--------INNPPSELQTTESNITEN 423


>tr|Q0CKK6|Q0CKK6_ASPTN Putative uncharacterized protein
           OS=Aspergillus terreus (strain NIH 2624) GN=ATEG_05778
           PE=4 SV=1
          Length = 316

 Score = 34.7 bits (78), Expect = 3.6
 Identities = 23/82 (28%), Positives = 43/82 (52%), Gaps = 8/82 (9%)
 Frame = +1

Query: 205 TTSLQALNLDPGSPHVTEDVYREFNEFKQQEKAKHGKQ--------HREDQVNELKSFSK 360
           T+S  + N++PG     +DV+R+  +     +  H +Q        HRED+   + + S 
Sbjct: 16  TSSTPSRNVEPGR----DDVHRKDKQPAAPSRPSHSRQSNPFVITDHREDRRTPVSNHSL 71

Query: 361 SLKDLAVVRQHGAATTGTVLKI 426
           S++D A+++     T GTV+K+
Sbjct: 72  SVQDFALLK-----TLGTVIKL 88


>tr|Q47JP4|Q47JP4_DECAR Acyltransferase 3 OS=Dechloromonas aromatica
           (strain RCB) GN=Daro_0178 PE=4 SV=1
          Length = 369

 Score = 34.3 bits (77), Expect = 4.6
 Identities = 19/52 (36%), Positives = 26/52 (50%)
 Frame = +2

Query: 377 QWLDSTELPQQALFLK*QVHALLLHPLYLFQTLSTTLQAC*VDLILQHLRII 532
           QWLD   +P +A F +   HA L+H L  F  LS  +    +D  L  L +I
Sbjct: 113 QWLDDEAIPARATFSQWLAHAFLVHSLLGFDALSAGVWYIAIDFQLFALMVI 164


>tr|B3C620|B3C620_9BACE Putative uncharacterized protein
           OS=Bacteroides intestinalis DSM 17393 GN=BACINT_00354
           PE=4 SV=1
          Length = 1399

 Score = 34.3 bits (77), Expect = 4.6
 Identities = 17/48 (35%), Positives = 27/48 (56%)
 Frame = -2

Query: 206 VSPSNEGGLGDENTPTLKLCLVQSPITTWGDFSLCILSLLSGAAILVF 63
           V  SN  G+ DEN  T+K+ ++  P  TW  ++L IL  + G +  +F
Sbjct: 794 VKSSNSNGIWDENVQTVKVTILPPPWKTWWAYTLYILVFI-GISCYIF 840


>tr|Q59LZ5|Q59LZ5_CANAL Putative uncharacterized protein TOM71
           (Putative uncharacterized protein CaJ7.0305) OS=Candida
           albicans GN=TOM70 PE=4 SV=1
          Length = 629

 Score = 34.3 bits (77), Expect = 4.7
 Identities = 27/126 (21%), Positives = 54/126 (42%), Gaps = 5/126 (3%)
 Frame = +1

Query: 7   SESGKNPASFRKDTTLASGNTSIAAPDSKDKMHKEKSPHVVIGDWTKHSLRVGVFSSPRP 186
           S  G N +S    ++   GNTS ++  SK K   +KS      + T  +      ++   
Sbjct: 36  STGGSNSSSKSNKSSSEEGNTSTSSSSSKKKKKSKKSKGSATPEPTNSTSSSTTTTTTTT 95

Query: 187 PSLLGDTTSLQALNL-----DPGSPHVTEDVYREFNEFKQQEKAKHGKQHREDQVNELKS 351
            +   D+ S  +  +       G P +T D+  + +E +++E A   K+    +    K+
Sbjct: 96  TTSSSDSKSTSSKKIKYPINSEGLPELTSDIISKLSETEKEEWAMQLKEDGNQEFKN-KN 154

Query: 352 FSKSLK 369
           F K+++
Sbjct: 155 FKKAIE 160


>tr|A8VZH2|A8VZH2_9BACI Rhodanese domain protein OS=Bacillus
           selenitireducens MLS10 GN=BselDRAFT_3256 PE=3 SV=1
          Length = 277

 Score = 33.5 bits (75), Expect = 8.1
 Identities = 31/120 (25%), Positives = 51/120 (42%), Gaps = 1/120 (0%)
 Frame = +1

Query: 16  GKNPASFRKDTTLASGNTSIAAPDSKDKMHKEKSPHVVIGDWTKHSLRVGVFSSPRPPSL 195
           G  PA+        +G   IA  DS+ ++ + + P + +G + +H   V   +      L
Sbjct: 159 GSAPATHLAQVRDLAGTVLIAPYDSRVRVQEHRHPWLPVGPFIRHPFEVSEMAKEIASPL 218

Query: 196 LGDTTSLQALNLDPGSPHVTEDVYREFNEFKQQEKAKHGK-QHREDQVNELKSFSKSLKD 372
           L  T S   + L P    VT D +      K  E   H   Q   D  ++++SF ++LKD
Sbjct: 219 LLITGSDDQVIL-PEHSFVTRDNWGGDVTDKHYEGYGHNDLQLHPDYQHDIRSFLEALKD 277


>tr|Q8ILA7|Q8ILA7_PLAF7 Putative uncharacterized protein
           OS=Plasmodium falciparum (isolate 3D7) GN=PF14_0338 PE=4
           SV=1
          Length = 910

 Score = 33.5 bits (75), Expect = 8.1
 Identities = 18/53 (33%), Positives = 29/53 (54%)
 Frame = +1

Query: 214 LQALNLDPGSPHVTEDVYREFNEFKQQEKAKHGKQHREDQVNELKSFSKSLKD 372
           + ALNL+P  P + E    E+  FK Q K K  + H++D+  E + F  + K+
Sbjct: 340 INALNLEPALPKLDEKTRTEWIMFKNQTKNK--ELHKKDKTTEKQEFITASKE 390