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NBDC - LSDB Archive
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BP918443
Clone id YMU001_000113_E10
Library
Length 521
Definition Adiantum capillus-veneris mRNA. clone: YMU001_000113_E10.
Accession
Tissue type prothallium
Developmental stage -
Contig ID -
Sequence 
CAAGGGGAGAAGATCAACACAATATTGGGGACCAAAAGATGGGCTTGTCCCCCCCTTCAA
AAGAATCTTTATTAAAGAAACTCCTTTTGCGAGCACAAGAACTGGAGTAACCCCTTCGTT
CTAAATCTCAGACTCGATGTTGTAAGCAGAGTAAAATCGACAAGCTGGACTATCTACAGC
TCGCATGGCACATGTAATAGAGCACAAAGTTGCTCGAACACCATTGTGAGTGCTCTCTTT
GAATCGATCCAGCACACATGGCGCGACATTATAACAAACATCCACATAAACAACAGAAGT
TATAGGCGTCTTGCTACTCCCAAGCCAAATAGCCTAGCTAGCACCCCCAAGCCTAGGAGC
CTTCATCTTAGTGCTACACCTGAAGGACTTGAGTCCCATACCACCAGACCACACCCTAGC
AAGATGTCAATGTTTGCATTACCTAACATCTTTAGCTAAAAGGTATCTGCAAAGTTAATG
ATTCTAGCTTACTTGCACATATCTATTCTATCAATGGAAAA
■■Homology search results ■■ -
sp_hit_id Q8BUE7
Definition sp|Q8BUE7|MUC20_MOUSE Mucin-20 OS=Mus musculus
Align length 44
Score (bit) 37.7
E-value 0.033
Report 
BLASTX 2.2.19 [Nov-02-2008]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= BP918443|Adiantum capillus-veneris mRNA, clone:
YMU001_000113_E10.
         (521 letters)

Database: uniprot_sprot.fasta 
           412,525 sequences; 148,809,765 total letters

Searching..................................................done



                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

sp|Q8BUE7|MUC20_MOUSE Mucin-20 OS=Mus musculus GN=Muc20 PE=1 SV=1      38   0.033
sp|P25344|STE50_YEAST Protein STE50 OS=Saccharomyces cerevisiae ...    34   0.36 
sp|P16758|UL20_HCMVA Uncharacterized protein UL20 OS=Human cytom...    33   1.1  
sp|A7MXZ8|TILS_VIBHB tRNA(Ile)-lysidine synthase OS=Vibrio harve...    30   6.9  
sp|P36027|MID2_YEAST Cell wall integrity sensor MID2 OS=Saccharo...    30   6.9  
sp|Q55DV2|GDT6_DICDI Probable inactive serine/threonine-protein ...    30   6.9  
sp|Q3AWX3|LEPA_SYNS9 GTP-binding protein lepA OS=Synechococcus s...    30   9.0  

>sp|Q8BUE7|MUC20_MOUSE Mucin-20 OS=Mus musculus GN=Muc20 PE=1 SV=1
          Length = 656

 Score = 37.7 bits (86), Expect = 0.033
 Identities = 17/44 (38%), Positives = 26/44 (59%)
 Frame = +1

Query: 316 TPKPNSLASTPKPRSLHLSATPEGLESHTTRPHPSKMSMFALPN 447
           +P P+SL ++P P SL  S  P  L++ TT P PS ++    P+
Sbjct: 182 SPAPSSLITSPTPSSLTTSPAPSFLDTQTTSPAPSSLTTSPAPS 225



 Score = 30.4 bits (67), Expect = 5.3
 Identities = 14/39 (35%), Positives = 20/39 (51%)
 Frame = +1

Query: 310 LATPKPNSLASTPKPRSLHLSATPEGLESHTTRPHPSKM 426
           + +P P+SL ++P P  L    T     S TT P PS +
Sbjct: 189 ITSPTPSSLTTSPAPSFLDTQTTSPAPSSLTTSPAPSSL 227


>sp|P25344|STE50_YEAST Protein STE50 OS=Saccharomyces cerevisiae
           GN=STE50 PE=1 SV=1
          Length = 346

 Score = 34.3 bits (77), Expect = 0.36
 Identities = 27/107 (25%), Positives = 48/107 (44%), Gaps = 1/107 (0%)
 Frame = +1

Query: 127 LRLDVVSRVK-STSWTIYSSHGTCNRAQSCSNTIVSALFESIQHTWRDIITNIHINNRSY 303
           LR+DV+  +K S+S +  ++HG      S +NTI+ +  + +  +  D    +H      
Sbjct: 140 LRMDVLDVMKTSSSSSPINTHGVSTTVPSSNNTIIPSS-DGVSLSQTDYFDTVHNRQSPS 198

Query: 304 RRLATPKPNSLASTPKPRSLHLSATPEGLESHTTRPHPSKMSMFALP 444
           RR +        S    +SLH  +  +  +  T + HPS +S    P
Sbjct: 199 RRESPVTVFRQPSLSHSKSLHKDSKNKVPQISTNQSHPSAVSTANTP 245


>sp|P16758|UL20_HCMVA Uncharacterized protein UL20 OS=Human
           cytomegalovirus (strain AD169) GN=UL20 PE=4 SV=1
          Length = 340

 Score = 32.7 bits (73), Expect = 1.1
 Identities = 29/107 (27%), Positives = 44/107 (41%), Gaps = 12/107 (11%)
 Frame = +1

Query: 100 NWSNPFVLNLRLDVVSRVKS---TSWTI---------YSSHGTCNRAQSCSNTIVSALFE 243
           NWS   V NL    ++R +S   T W +         YS +   +   +C NT+   LF 
Sbjct: 78  NWS---VTNLTESCINRGESYLTTIWLLNCADNNTYWYSGNAYNHTIDTCKNTVSGYLFF 134

Query: 244 SIQHTWRDIITNIHINNRSYRRLATPKPNSLASTPKPRSLHLSATPE 384
            +   W+D +TN   +    + L     N +     PR   L+AT E
Sbjct: 135 GMCQLWKDWVTNASHDTVRIQSLG----NEIRCMLLPRQYTLNATVE 177


>sp|A7MXZ8|TILS_VIBHB tRNA(Ile)-lysidine synthase OS=Vibrio harveyi
           (strain ATCC BAA-1116 / BB120) GN=tilS PE=3 SV=1
          Length = 448

 Score = 30.0 bits (66), Expect = 6.9
 Identities = 14/33 (42%), Positives = 20/33 (60%), Gaps = 1/33 (3%)
 Frame = +1

Query: 331 SLASTPKPRSLHLSATPEGLESH-TTRPHPSKM 426
           ++A  P P  L ++  PEGL +H TTR H  K+
Sbjct: 365 TIAMPPHPELLRVTFNPEGLSAHPTTRSHSRKL 397


>sp|P36027|MID2_YEAST Cell wall integrity sensor MID2
           OS=Saccharomyces cerevisiae GN=MID2 PE=1 SV=1
          Length = 376

 Score = 30.0 bits (66), Expect = 6.9
 Identities = 34/130 (26%), Positives = 54/130 (41%), Gaps = 6/130 (4%)
 Frame = +1

Query: 76  RNSFCEHKNWSNPFVLNLRLDVVSRVKSTSWTIYSSHGTCNRAQSCSNTIVSALFESIQH 255
           R  F    + SN   ++     VSRV S+S  + SS  + + A S S T  ++    + H
Sbjct: 24  RAQFFVQSSSSNSSAVSTARSSVSRVSSSSSILSSSMVSSSSADSSSLTSSTSSRSLVSH 83

Query: 256 TWRDI-ITNIHINNRSYRRLATPKPNSLASTPKPRSLHL-----SATPEGLESHTTRPHP 417
           T     I +I   + S+   ++   +S AS+    S        SAT E   S T     
Sbjct: 84  TSSSTSIASISFTSFSFSSDSSTSSSSSASSDSSSSSSFSISSTSATSESSTSSTQTSTS 143

Query: 418 SKMSMFALPN 447
           S  S+ + P+
Sbjct: 144 SSSSLSSTPS 153


>sp|Q55DV2|GDT6_DICDI Probable inactive serine/threonine-protein
            kinase gdt6 OS=Dictyostelium discoideum GN=gdt6 PE=3 SV=1
          Length = 1452

 Score = 30.0 bits (66), Expect = 6.9
 Identities = 17/51 (33%), Positives = 27/51 (52%)
 Frame = +1

Query: 271  ITNIHINNRSYRRLATPKPNSLASTPKPRSLHLSATPEGLESHTTRPHPSK 423
            +T++ + + +   + TP P S  STP P S   ++TP    + TT P  SK
Sbjct: 915  LTSMAVYSSAIPIIVTPTPTSTTSTPTPTST-TTSTPIPTTTPTTTPKTSK 964


>sp|Q3AWX3|LEPA_SYNS9 GTP-binding protein lepA OS=Synechococcus sp.
           (strain CC9902) GN=lepA PE=3 SV=1
          Length = 602

 Score = 29.6 bits (65), Expect = 9.0
 Identities = 11/29 (37%), Positives = 18/29 (62%)
 Frame = -3

Query: 321 GSSKTPITSVVYVDVCYNVAPCVLDRFKE 235
           G    P+T++V+ D  YNV   ++D+ KE
Sbjct: 495 GDRADPLTTIVHQDKAYNVGKALVDKLKE 523
tr_hit_id B6ZDP2
Definition tr|B6ZDP2|B6ZDP2_HUMAN Putative uncharacterized protein ZNF683 OS=Homo sapiens
Align length 49
Score (bit) 37.4
E-value 0.45
Report 
BLASTX 2.2.19 [Nov-02-2008]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= BP918443|Adiantum capillus-veneris mRNA, clone:
YMU001_000113_E10.
         (521 letters)

Database: uniprot_trembl.fasta 
           7,341,751 sequences; 2,391,615,440 total letters

Searching..................................................done



                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

tr|B6ZDP2|B6ZDP2_HUMAN Putative uncharacterized protein ZNF683 O...    37   0.45 
tr|B4NPF8|B4NPF8_DROWI GK15277 OS=Drosophila willistoni GN=GK152...    35   2.2  
tr|B5VES6|B5VES6_YEAS6 YCL032Wp-like protein OS=Saccharomyces ce...    34   3.8  
tr|B3LU50|B3LU50_YEAS1 Protein STE50 OS=Saccharomyces cerevisiae...    34   3.8  
tr|A6ZTF8|A6ZTF8_YEAS7 Protein kinase regulator OS=Saccharomyces...    34   3.8  
tr|B7S8P7|B7S8P7_9HYME Putative uncharacterized protein OS=Glypt...    34   5.0  
tr|Q4PC42|Q4PC42_USTMA Putative uncharacterized protein OS=Ustil...    33   6.5  
tr|Q1DZ11|Q1DZ11_COCIM Putative uncharacterized protein OS=Cocci...    33   6.5  
tr|Q08D39|Q08D39_XENTR Protein tyrosine phosphatase, non-recepto...    33   8.5  
tr|B5VNM5|B5VNM5_YEAS6 YLR332Wp-like protein OS=Saccharomyces ce...    33   8.5  

>tr|B6ZDP2|B6ZDP2_HUMAN Putative uncharacterized protein ZNF683
           OS=Homo sapiens GN=ZNF683 PE=4 SV=1
          Length = 153

 Score = 37.4 bits (85), Expect = 0.45
 Identities = 21/49 (42%), Positives = 28/49 (57%), Gaps = 2/49 (4%)
 Frame = +1

Query: 310 LATPKPNSLASTPKPRSLHLSATPEGLESHTTRPHP--SKMSMFALPNI 450
           L+ P P    STP PRS H S+TP  L++H +  HP  S M  + L N+
Sbjct: 88  LSAPVP---LSTPSPRSSHFSSTPSTLDTHFSCLHPTCSPMGPYLLTNV 133


>tr|B4NPF8|B4NPF8_DROWI GK15277 OS=Drosophila willistoni GN=GK15277
            PE=4 SV=1
          Length = 2763

 Score = 35.0 bits (79), Expect = 2.2
 Identities = 18/48 (37%), Positives = 26/48 (54%)
 Frame = +1

Query: 313  ATPKPNSLASTPKPRSLHLSATPEGLESHTTRPHPSKMSMFALPNIFS 456
            A+ KPN +A++  P S  ++  P    S +T P PS M M   PN+ S
Sbjct: 1235 ASLKPNEIATSRNPAST-VTGAPSSSSSSSTPPTPSNMDMLKNPNVLS 1281


>tr|B5VES6|B5VES6_YEAS6 YCL032Wp-like protein OS=Saccharomyces
           cerevisiae (strain AWRI1631) GN=AWRI1631_30340 PE=4 SV=1
          Length = 346

 Score = 34.3 bits (77), Expect = 3.8
 Identities = 27/107 (25%), Positives = 48/107 (44%), Gaps = 1/107 (0%)
 Frame = +1

Query: 127 LRLDVVSRVK-STSWTIYSSHGTCNRAQSCSNTIVSALFESIQHTWRDIITNIHINNRSY 303
           LR+DV+  +K S+S +  ++HG      S +NTI+ +  + +  +  D    +H      
Sbjct: 140 LRMDVLEVMKTSSSSSPINTHGVSTTVPSSNNTIIPSS-DGVSLSQTDYFDTVHNRQSPS 198

Query: 304 RRLATPKPNSLASTPKPRSLHLSATPEGLESHTTRPHPSKMSMFALP 444
           RR +        S    +SLH  +  +  +  T + HPS +S    P
Sbjct: 199 RRESPVTVFRQPSLSHSKSLHKDSKNKVPQISTNQSHPSAVSTANTP 245


>tr|B3LU50|B3LU50_YEAS1 Protein STE50 OS=Saccharomyces cerevisiae
           (strain RM11-1a) GN=SCRG_05376 PE=4 SV=1
          Length = 346

 Score = 34.3 bits (77), Expect = 3.8
 Identities = 27/107 (25%), Positives = 48/107 (44%), Gaps = 1/107 (0%)
 Frame = +1

Query: 127 LRLDVVSRVK-STSWTIYSSHGTCNRAQSCSNTIVSALFESIQHTWRDIITNIHINNRSY 303
           LR+DV+  +K S+S +  ++HG      S +NTI+ +  + +  +  D    +H      
Sbjct: 140 LRMDVLEVMKTSSSSSPINTHGVSTTVPSSNNTIIPSS-DGVSLSQTDYFDTVHNRQSPS 198

Query: 304 RRLATPKPNSLASTPKPRSLHLSATPEGLESHTTRPHPSKMSMFALP 444
           RR +        S    +SLH  +  +  +  T + HPS +S    P
Sbjct: 199 RRESPVTVFRQPSLSHSKSLHKDSKNKVPQISTNQSHPSAVSTANTP 245


>tr|A6ZTF8|A6ZTF8_YEAS7 Protein kinase regulator OS=Saccharomyces
           cerevisiae (strain YJM789) GN=STE50 PE=4 SV=1
          Length = 346

 Score = 34.3 bits (77), Expect = 3.8
 Identities = 27/107 (25%), Positives = 48/107 (44%), Gaps = 1/107 (0%)
 Frame = +1

Query: 127 LRLDVVSRVK-STSWTIYSSHGTCNRAQSCSNTIVSALFESIQHTWRDIITNIHINNRSY 303
           LR+DV+  +K S+S +  ++HG      S +NTI+ +  + +  +  D    +H      
Sbjct: 140 LRMDVLEVMKTSSSSSPINTHGVSTTVPSSNNTIIPSS-DGVSLSQTDYFDTVHNRQSPS 198

Query: 304 RRLATPKPNSLASTPKPRSLHLSATPEGLESHTTRPHPSKMSMFALP 444
           RR +        S    +SLH  +  +  +  T + HPS +S    P
Sbjct: 199 RRESPVTVFRQPSLSHSKSLHKDSKNKVPQISTNQSHPSAVSTANTP 245


>tr|B7S8P7|B7S8P7_9HYME Putative uncharacterized protein
           OS=Glyptapanteles flavicoxis GN=GFP_L5_0200 PE=4 SV=1
          Length = 884

 Score = 33.9 bits (76), Expect = 5.0
 Identities = 28/96 (29%), Positives = 45/96 (46%), Gaps = 1/96 (1%)
 Frame = +1

Query: 160 TSWTIYSSHGTCNRAQSCSNTIVSALFESIQHTW-RDIITNIHINNRSYRRLATPKPNSL 336
           T  TI SS  + +   S  ++    +F+S+  T   D+IT  H  N           NSL
Sbjct: 431 TESTIMSSITSSDTGASLKSSQQPLIFDSLTKTLVSDLITPSHSYN-----------NSL 479

Query: 337 ASTPKPRSLHLSATPEGLESHTTRPHPSKMSMFALP 444
           +S+P+P SL  S+ P  + ++ T    S+M    +P
Sbjct: 480 SSSPEPASLPPSSLPTHIRANLTTEGISQMEFGRIP 515


>tr|Q4PC42|Q4PC42_USTMA Putative uncharacterized protein OS=Ustilago
           maydis GN=UM02321.1 PE=4 SV=1
          Length = 1012

 Score = 33.5 bits (75), Expect = 6.5
 Identities = 19/53 (35%), Positives = 28/53 (52%), Gaps = 5/53 (9%)
 Frame = +1

Query: 277 NIHINNRSYRRLATPKPNSLASTPKPRSLHLSATPEGLESHTT-----RPHPS 420
           N+ ++  +    ATP P+S   TPKP+S +L+ T  GL S  +      P PS
Sbjct: 93  NLDLSADAPESSATPPPDSAPETPKPKSNNLTGTALGLSSSESSFSDDEPEPS 145


>tr|Q1DZ11|Q1DZ11_COCIM Putative uncharacterized protein
           OS=Coccidioides immitis GN=CIMG_04452 PE=4 SV=1
          Length = 1160

 Score = 33.5 bits (75), Expect = 6.5
 Identities = 25/74 (33%), Positives = 34/74 (45%), Gaps = 7/74 (9%)
 Frame = +1

Query: 217 NTIVSALFESIQHTWRD-------IITNIHINNRSYRRLATPKPNSLASTPKPRSLHLSA 375
           ++++SAL +  QH+ R          T+ HINN      A  +P+   S   P   H SA
Sbjct: 287 SSVLSALPDESQHSRRPSPPSSNATPTSAHINNPPASYKAPRQPSPPFSNANPTPTHASA 346

Query: 376 TPEGLESHTTRPHP 417
           TP      TTRP P
Sbjct: 347 TPASYT--TTRPPP 358


>tr|Q08D39|Q08D39_XENTR Protein tyrosine phosphatase, non-receptor
           type 3 OS=Xenopus tropicalis GN=ptpn3 PE=2 SV=1
          Length = 921

 Score = 33.1 bits (74), Expect = 8.5
 Identities = 14/29 (48%), Positives = 18/29 (62%)
 Frame = +1

Query: 328 NSLASTPKPRSLHLSATPEGLESHTTRPH 414
           N L  +PK  +LH  A+P GL SH+T  H
Sbjct: 447 NILEHSPKENNLHQPASPSGLSSHSTSSH 475


>tr|B5VNM5|B5VNM5_YEAS6 YLR332Wp-like protein OS=Saccharomyces
           cerevisiae (strain AWRI1631) GN=AWRI1631_123620 PE=4
           SV=1
          Length = 376

 Score = 33.1 bits (74), Expect = 8.5
 Identities = 35/130 (26%), Positives = 55/130 (42%), Gaps = 6/130 (4%)
 Frame = +1

Query: 76  RNSFCEHKNWSNPFVLNLRLDVVSRVKSTSWTIYSSHGTCNRAQSCSNTIVSALFESIQH 255
           R  F    + SN   ++     VSRV S+S  + SS  + + A S S T  ++    + H
Sbjct: 24  RAQFFVQSSSSNSSAVSTARSSVSRVSSSSSILSSSMVSSSSADSSSLTSSTSSRSLVSH 83

Query: 256 TWRDI-ITNIHINNRSYRRLATPKPNSLASTPKPRSLHL-----SATPEGLESHTTRPHP 417
           T     I +I   + S+   ++   +S AS+  P S        SAT E   S T     
Sbjct: 84  TSSSTSIASISFTSFSFSSDSSTSSSSSASSDSPSSSSFSISSTSATSESSTSSTQTSTS 143

Query: 418 SKMSMFALPN 447
           S  S+ + P+
Sbjct: 144 SSSSLSSTPS 153