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AcEST | BlastX Result : Swiss-Prot | BlastX Result : TrEMBL | AcESTcontig | About Libraries
NBDC - LSDB Archive
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AcEST | BlastX Result : Swiss-Prot | BlastX Result : TrEMBL | AcESTcontig | About Libraries
BP918447
Clone id YMU001_000113_F02
Library
Length 538
Definition Adiantum capillus-veneris mRNA. clone: YMU001_000113_F02.
Accession
Tissue type prothallium
Developmental stage -
Contig ID -
Sequence 
CACAGATGTGCCACTCAATAATGACAGTCTCGCCTCTCGTGCACCAACTATGTCATGCAC
TGAACCATCAGTCAAAGTATACATTGCCAAGCATCCCATCAAAATAGCTACAAAATGAGT
CACGGTGTGGAGTGACATGAAACATACCGTCCACATCTAGCAGACACTATGAAGGAAGTA
CACAATCCATAGACATAATAATGTTGGGAGAAAAAGATGAAGCAAATGTGACATCCCCAT
CACTCATGTACTCAAGACACTACATCTACTCCTCTAGCTATCAAATCAACTGAGCTAACA
TCATCAACTGCATCTCGTAAGACAACCATGTCTTTTGCATTGTCTCATACGACAAAGAAA
CACCTTCTGATGTGTCCTAAATGATCACAATGCCAACACATAACCTGTTAGTGTGGACGT
GAAGGTCTCTGTCTCACACGAGTCGTAGATGACTCAGATCTATCATACGTTACATGTATT
CTCTGCCACAATGCTCTCGTAGTACGATCATGCATAACAAAAGCATATATTGACTCTC
■■Homology search results ■■ -
sp_hit_id P47179
Definition sp|P47179|DAN4_YEAST Cell wall protein DAN4 OS=Saccharomyces cerevisiae
Align length 38
Score (bit) 30.0
E-value 7.5
Report 
BLASTX 2.2.19 [Nov-02-2008]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= BP918447|Adiantum capillus-veneris mRNA, clone:
YMU001_000113_F02.
         (538 letters)

Database: uniprot_sprot.fasta 
           412,525 sequences; 148,809,765 total letters

Searching..................................................done



                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

sp|P47179|DAN4_YEAST Cell wall protein DAN4 OS=Saccharomyces cer...    30   7.5  

>sp|P47179|DAN4_YEAST Cell wall protein DAN4 OS=Saccharomyces
           cerevisiae GN=DAN4 PE=2 SV=1
          Length = 1161

 Score = 30.0 bits (66), Expect = 7.5
 Identities = 18/38 (47%), Positives = 23/38 (60%), Gaps = 5/38 (13%)
 Frame = +1

Query: 241 HSCTQDTT-----STPLAIKSTELTSSTASRKTTMSFA 339
           +S TQ TT     STPLA+ ST +TSST S    + F+
Sbjct: 665 NSSTQSTTFFATPSTPLAVSSTVVTSSTDSVSPNIPFS 702
tr_hit_id A5AJD8
Definition tr|A5AJD8|A5AJD8_VITVI Putative uncharacterized protein OS=Vitis vinifera
Align length 63
Score (bit) 33.5
E-value 0.094
Report 
BLASTX 2.2.19 [Nov-02-2008]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= BP918447|Adiantum capillus-veneris mRNA, clone:
YMU001_000113_F02.
         (538 letters)

Database: uniprot_trembl.fasta 
           7,341,751 sequences; 2,391,615,440 total letters

Searching..................................................done



                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

tr|A5AJD8|A5AJD8_VITVI Putative uncharacterized protein OS=Vitis...    33   0.094
tr|Q7XLX2|Q7XLX2_ORYSA OSJNBa0042I15.19 protein OS=Oryza sativa ...    31   0.21 
tr|A7Q1U5|A7Q1U5_VITVI Chromosome chr7 scaffold_44, whole genome...    30   0.62 
tr|Q2QUM8|Q2QUM8_ORYSJ Retrotransposon protein, putative, Ty1-co...    31   0.75 
tr|A5AKY6|A5AKY6_VITVI Putative uncharacterized protein OS=Vitis...    28   2.5  
tr|A5ASH8|A5ASH8_VITVI Putative uncharacterized protein OS=Vitis...    28   2.6  
tr|A5CAX7|A5CAX7_VITVI Putative uncharacterized protein OS=Vitis...    27   4.1  
tr|A8XMU9|A8XMU9_CAEBR Putative uncharacterized protein OS=Caeno...    34   5.6  
tr|Q2QVJ2|Q2QVJ2_ORYSJ Retrotransposon protein, putative, Ty1-co...    27   7.3  
tr|A5APH6|A5APH6_VITVI Putative uncharacterized protein OS=Vitis...    33   9.3  

>tr|A5AJD8|A5AJD8_VITVI Putative uncharacterized protein OS=Vitis
           vinifera GN=VITISV_043416 PE=4 SV=1
          Length = 776

 Score = 33.5 bits (75), Expect(2) = 0.094
 Identities = 19/63 (30%), Positives = 27/63 (42%), Gaps = 5/63 (7%)
 Frame = -1

Query: 259 CLEYMSDGDVTFASSFSPNIIMSMDCVLPS*C-----LLDVDGMFHVTPHRDSFCSYFDG 95
           C E   D D+   +S     I+  D  +   C     ++D    FH+T H+D F SY  G
Sbjct: 338 CEEQKEDKDIVVVASDGDTTIVCDDACVNLACQDSTWVVDTAMSFHITTHKDFFSSYTSG 397

Query: 94  MLG 86
             G
Sbjct: 398 SFG 400



 Score = 25.4 bits (54), Expect(2) = 0.094
 Identities = 8/15 (53%), Positives = 12/15 (80%)
 Frame = -3

Query: 407 QVMCWHCDHLGHIRR 363
           ++ C+H D LGHI+R
Sbjct: 310 EIKCFHYDKLGHIKR 324


>tr|Q7XLX2|Q7XLX2_ORYSA OSJNBa0042I15.19 protein OS=Oryza sativa
           GN=OSJNBa0042I15.19 PE=4 SV=3
          Length = 478

 Score = 31.2 bits (69), Expect(2) = 0.21
 Identities = 14/29 (48%), Positives = 17/29 (58%)
 Frame = -1

Query: 163 LLDVDGMFHVTPHRDSFCSYFDGMLGNVY 77
           +LD    FHVTP ++ F SY  G  G VY
Sbjct: 331 ILDSASSFHVTPRKEWFSSYKSGEFGFVY 359



 Score = 26.6 bits (57), Expect(2) = 0.21
 Identities = 15/42 (35%), Positives = 18/42 (42%)
 Frame = -3

Query: 404 VMCWHCDHLGHIRRCFFVV*DNAKDMVVLRDAVDDVSSVDLI 279
           V C+ CD  GHIRR    +   AK  V       D    DL+
Sbjct: 276 VKCFRCDEWGHIRRECPTLKGKAKANVATSSNDSDSDGCDLL 317


>tr|A7Q1U5|A7Q1U5_VITVI Chromosome chr7 scaffold_44, whole genome
           shotgun sequence OS=Vitis vinifera GN=GSVIVT00028603001
           PE=4 SV=1
          Length = 185

 Score = 30.0 bits (66), Expect(2) = 0.62
 Identities = 13/23 (56%), Positives = 19/23 (82%)
 Frame = -2

Query: 75  LTDGSVHDIVGAREARLSLLSGT 7
           LTDGSV ++VG R+ R+SL +G+
Sbjct: 127 LTDGSVLNVVGLRDVRISLPNGS 149



 Score = 26.2 bits (56), Expect(2) = 0.62
 Identities = 12/29 (41%), Positives = 14/29 (48%)
 Frame = -1

Query: 163 LLDVDGMFHVTPHRDSFCSYFDGMLGNVY 77
           +LD    FH TPHR+    Y     G VY
Sbjct: 98  VLDSRVSFHTTPHREIIQDYAASDFGKVY 126


>tr|Q2QUM8|Q2QUM8_ORYSJ Retrotransposon protein, putative, Ty1-copia
           subclass OS=Oryza sativa subsp. japonica
           GN=LOC_Os12g15720 PE=4 SV=2
          Length = 407

 Score = 31.2 bits (69), Expect(2) = 0.75
 Identities = 14/29 (48%), Positives = 17/29 (58%)
 Frame = -1

Query: 163 LLDVDGMFHVTPHRDSFCSYFDGMLGNVY 77
           +LD    FHVTP ++ F SY  G  G VY
Sbjct: 260 ILDSASSFHVTPRKEWFSSYKSGEFGFVY 288



 Score = 24.6 bits (52), Expect(2) = 0.75
 Identities = 14/42 (33%), Positives = 17/42 (40%)
 Frame = -3

Query: 404 VMCWHCDHLGHIRRCFFVV*DNAKDMVVLRDAVDDVSSVDLI 279
           V C+ CD  GHI R    +   AK   V      D    DL+
Sbjct: 205 VQCFRCDEWGHISRECPTLKGKAKANTVTSSNDSDSDGCDLL 246


>tr|A5AKY6|A5AKY6_VITVI Putative uncharacterized protein OS=Vitis
           vinifera GN=VITISV_034722 PE=4 SV=1
          Length = 1056

 Score = 28.5 bits (62), Expect(2) = 2.5
 Identities = 17/65 (26%), Positives = 30/65 (46%), Gaps = 4/65 (6%)
 Frame = -1

Query: 259 CLEYMSDGDVTFASSFSPNI----IMSMDCVLPS*CLLDVDGMFHVTPHRDSFCSYFDGM 92
           C  +  + +  FA+  +  +    ++++D  L    +LD    FH TPHR+   +Y    
Sbjct: 215 CKSHKKNNEDDFANVVTEEVQDALLLAVDSPLDD-WVLDSRASFHTTPHREIIQNYAASE 273

Query: 91  LGNVY 77
            G VY
Sbjct: 274 FGKVY 278



 Score = 25.4 bits (54), Expect(2) = 2.5
 Identities = 11/22 (50%), Positives = 15/22 (68%)
 Frame = -2

Query: 75  LTDGSVHDIVGAREARLSLLSG 10
           L DGS  D+VG  + R+SL +G
Sbjct: 279 LADGSALDVVGLGDVRISLPNG 300


>tr|A5ASH8|A5ASH8_VITVI Putative uncharacterized protein OS=Vitis
           vinifera GN=VITISV_040580 PE=4 SV=1
          Length = 630

 Score = 28.1 bits (61), Expect(2) = 2.6
 Identities = 12/29 (41%), Positives = 15/29 (51%)
 Frame = -1

Query: 163 LLDVDGMFHVTPHRDSFCSYFDGMLGNVY 77
           +LD    FH TPHR+   +Y     G VY
Sbjct: 217 VLDSGASFHTTPHREIIQNYVADDFGKVY 245



 Score = 25.8 bits (55), Expect(2) = 2.6
 Identities = 11/23 (47%), Positives = 16/23 (69%)
 Frame = -2

Query: 75  LTDGSVHDIVGAREARLSLLSGT 7
           L DGS  D+VG  + R+SL +G+
Sbjct: 246 LADGSALDVVGLGDVRISLPNGS 268


>tr|A5CAX7|A5CAX7_VITVI Putative uncharacterized protein OS=Vitis
           vinifera GN=VITISV_035336 PE=4 SV=1
          Length = 1244

 Score = 27.3 bits (59), Expect(2) = 4.1
 Identities = 12/29 (41%), Positives = 15/29 (51%)
 Frame = -1

Query: 163 LLDVDGMFHVTPHRDSFCSYFDGMLGNVY 77
           +LD    FH TP R+   +Y  G  G VY
Sbjct: 287 VLDSGASFHTTPXREIIQNYVAGDFGKVY 315



 Score = 25.8 bits (55), Expect(2) = 4.1
 Identities = 11/23 (47%), Positives = 16/23 (69%)
 Frame = -2

Query: 75  LTDGSVHDIVGAREARLSLLSGT 7
           L DGS  D+VG  + R+SL +G+
Sbjct: 316 LADGSALDVVGLGDVRISLPNGS 338


>tr|A8XMU9|A8XMU9_CAEBR Putative uncharacterized protein
           OS=Caenorhabditis briggsae GN=CBG15870 PE=4 SV=2
          Length = 273

 Score = 33.9 bits (76), Expect = 5.6
 Identities = 20/52 (38%), Positives = 29/52 (55%)
 Frame = +1

Query: 238 HHSCTQDTTSTPLAIKSTELTSSTASRKTTMSFALSHTTKKHLLMCPK*SQC 393
           H  C+++ TST    + T  TSST S KTT   A  + T + L +CP+ + C
Sbjct: 83  HQGCSEELTST--TPEETTATSST-SIKTTPDPAFMYATGRRLPLCPRDTSC 131


>tr|Q2QVJ2|Q2QVJ2_ORYSJ Retrotransposon protein, putative, Ty1-copia
           subclass OS=Oryza sativa subsp. japonica
           GN=LOC_Os12g12620 PE=4 SV=1
          Length = 424

 Score = 27.3 bits (59), Expect(2) = 7.3
 Identities = 13/29 (44%), Positives = 16/29 (55%)
 Frame = -1

Query: 163 LLDVDGMFHVTPHRDSFCSYFDGMLGNVY 77
           +LD    +HVT  R+ F SY  G  G VY
Sbjct: 276 MLDSASSYHVTSKREWFSSYKSGDFGVVY 304



 Score = 25.0 bits (53), Expect(2) = 7.3
 Identities = 18/52 (34%), Positives = 24/52 (46%)
 Frame = -3

Query: 398 CWHCDHLGHIRRCFFVV*DNAKDMVVLRDAVDDVSSVDLIARGVDVVS*VHE 243
           C+ C   GHIRR          +  +L+   D ++S  L ARG D  S  HE
Sbjct: 223 CYKCHEFGHIRR----------NCPLLKKRKDGIAS--LAARGDDSDSSSHE 262


>tr|A5APH6|A5APH6_VITVI Putative uncharacterized protein OS=Vitis
           vinifera GN=VITISV_018181 PE=4 SV=1
          Length = 1069

 Score = 33.1 bits (74), Expect = 9.3
 Identities = 13/33 (39%), Positives = 19/33 (57%)
 Frame = -3

Query: 461 RSESSTTRVRQRPSRPH*QVMCWHCDHLGHIRR 363
           RS+S  +   +  SR   QV CW+C  +GH +R
Sbjct: 218 RSKSKNSNQNRSKSRSGQQVQCWNCGKIGHFKR 250