BP918456 |
Clone id |
YMU001_000113_F11 |
Library |
YMU01 |
Length |
456 |
Definition |
Adiantum capillus-veneris mRNA. clone: YMU001_000113_F11. |
Accession |
BP918456 |
Tissue type |
prothallium |
Developmental stage |
- |
Contig ID |
CL2911Contig1 |
Sequence |
AGCCAGGAACCTTGTTCTGTTGCCTTTATAAACCGGCTGAAAAGTACATAAACCGGCCTG CTTCTAGATTGTCTTAAAACTCTTCAGCTAAAACATTGTATGGATTCCTATGGCAGAACA CTCTTAATTCAACCTTATGACATATTGGTGTCACTGTTTAACTTATAAGCAGTGTAACAG AGGTGCTCTCTCAGAGCCCCTCAATTGTAACCAGTTGAGAAGTCATCCATTTGCTTGTTG TAGGAGCCTTGTATTATATGACAATCCATCATGCAGCACGCACAGGCATGGAAAATACCA TCAAAACTGCTTCAATTCATAGAATAAATAGCTTGTTGGCCTCACCAGCCTTTAAGAAGT AGCTTCAGAAGCGCCATGCGAATATATAGCCCATTCTTGGCCTGACGAAAGTATGCAGCA CGAGGATCGGAGTCCACATCGACAGTTATCTCATCA |
■■Homology search results ■■ |
- |
Swiss-Prot (release 56.9) |
Link to BlastX Result : Swiss-Prot |
sp_hit_id |
P49077 |
Definition |
sp|P49077|PYRB_ARATH Aspartate carbamoyltransferase, chloroplastic OS=Arabidopsis thaliana |
Align length |
37 |
Score (bit) |
59.3 |
E-value |
8.0e-09 |
Report |
BLASTX 2.2.19 [Nov-02-2008]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402.
Query= BP918456|Adiantum capillus-veneris mRNA, clone: YMU001_000113_F11. (456 letters)
Database: uniprot_sprot.fasta 412,525 sequences; 148,809,765 total letters
Searching..................................................done
Score E Sequences producing significant alignments: (bits) Value
sp|P49077|PYRB_ARATH Aspartate carbamoyltransferase, chloroplast... 59 8e-09 sp|Q43064|PYRB3_PEA Aspartate carbamoyltransferase 3, chloroplas... 59 8e-09 sp|Q43087|PYRB2_PEA Aspartate carbamoyltransferase 2, chloroplas... 59 8e-09 sp|Q43086|PYRB1_PEA Aspartate carbamoyltransferase 1, chloroplas... 59 1e-08 sp|P08955|PYR1_MESAU CAD protein OS=Mesocricetus auratus GN=CAD ... 52 9e-07 sp|P27708|PYR1_HUMAN CAD protein OS=Homo sapiens GN=CAD PE=1 SV=3 52 9e-07 sp|Q91437|PYR1_SQUAC CAD protein OS=Squalus acanthias GN=CAD PE=... 52 2e-06 sp|P20054|PYR1_DICDI Protein PYR1-3 OS=Dictyostelium discoideum ... 47 3e-05 sp|Q8G655|PYRB_BIFLO Aspartate carbamoyltransferase OS=Bifidobac... 47 5e-05 sp|P05990|PYR1_DROME CAD protein OS=Drosophila melanogaster GN=r... 46 7e-05 sp|Q18CS8|PYRB_CLOD6 Aspartate carbamoyltransferase OS=Clostridi... 45 1e-04 sp|A1A1F7|PYRB_BIFAA Aspartate carbamoyltransferase OS=Bifidobac... 44 3e-04 sp|Q97FS3|PYRB_CLOAB Aspartate carbamoyltransferase OS=Clostridi... 44 3e-04 sp|B0TPF3|PYRB3_SHEHH Aspartate carbamoyltransferase 3 OS=Shewan... 44 3e-04 sp|B0TST3|PYRB2_SHEHH Aspartate carbamoyltransferase 2 OS=Shewan... 44 3e-04 sp|B0TSQ4|PYRB1_SHEHH Aspartate carbamoyltransferase 1 OS=Shewan... 44 3e-04 sp|A5N2L8|PYRB_CLOK5 Aspartate carbamoyltransferase OS=Clostridi... 43 6e-04 sp|Q7P145|PYRB_CHRVO Aspartate carbamoyltransferase OS=Chromobac... 43 7e-04 sp|A7GII2|PYRB_CLOBL Aspartate carbamoyltransferase OS=Clostridi... 42 0.001 sp|A5I6X1|PYRB_CLOBH Aspartate carbamoyltransferase OS=Clostridi... 42 0.001 sp|A7FYJ2|PYRB_CLOB1 Aspartate carbamoyltransferase OS=Clostridi... 42 0.001 sp|Q87LF8|PYRB_VIBPA Aspartate carbamoyltransferase OS=Vibrio pa... 42 0.002 sp|Q6DA73|PYRB_ERWCT Aspartate carbamoyltransferase OS=Erwinia c... 42 0.002 sp|A8MIU1|PYRB_ALKOO Aspartate carbamoyltransferase OS=Alkaliphi... 42 0.002 sp|Q7MZ16|PYRB_PHOLL Aspartate carbamoyltransferase OS=Photorhab... 41 0.002 sp|A7MSE0|PYRB_VIBHB Aspartate carbamoyltransferase OS=Vibrio ha... 41 0.003 sp|A9KNJ3|PYRB_CLOPH Aspartate carbamoyltransferase OS=Clostridi... 40 0.004 sp|Q8XL59|PYRB_CLOPE Aspartate carbamoyltransferase OS=Clostridi... 40 0.005 sp|A6L5J9|PYRB_BACV8 Aspartate carbamoyltransferase OS=Bacteroid... 40 0.005 sp|Q7MHF1|PYRB_VIBVY Aspartate carbamoyltransferase OS=Vibrio vu... 40 0.006
>sp|P49077|PYRB_ARATH Aspartate carbamoyltransferase, chloroplastic OS=Arabidopsis thaliana GN=PYRB PE=2 SV=2 Length = 390
Score = 59.3 bits (142), Expect = 8e-09 Identities = 27/37 (72%), Positives = 29/37 (78%) Frame = -2
Query: 455 DEITVDVDSDPRAAYFRQAKNGLYIRMAXXXXXXKGW 345 DEIT DVD+DPRAAYFRQAKNGL+IRMA GW Sbjct: 354 DEITADVDADPRAAYFRQAKNGLFIRMALLKLLLVGW 390
>sp|Q43064|PYRB3_PEA Aspartate carbamoyltransferase 3, chloroplastic OS=Pisum sativum GN=PYRB3 PE=2 SV=1 Length = 391
Score = 59.3 bits (142), Expect = 8e-09 Identities = 28/37 (75%), Positives = 29/37 (78%) Frame = -2
Query: 455 DEITVDVDSDPRAAYFRQAKNGLYIRMAXXXXXXKGW 345 DEITVDVD+DPRAAYFRQAK GLYIRMA GW Sbjct: 355 DEITVDVDADPRAAYFRQAKYGLYIRMALLKLLLVGW 391
>sp|Q43087|PYRB2_PEA Aspartate carbamoyltransferase 2, chloroplastic OS=Pisum sativum GN=PYRB2 PE=2 SV=1 Length = 385
Score = 59.3 bits (142), Expect = 8e-09 Identities = 28/37 (75%), Positives = 29/37 (78%) Frame = -2
Query: 455 DEITVDVDSDPRAAYFRQAKNGLYIRMAXXXXXXKGW 345 DEITVDVD+DPRAAYFRQAK GLYIRMA GW Sbjct: 349 DEITVDVDADPRAAYFRQAKYGLYIRMALLKLLLVGW 385
>sp|Q43086|PYRB1_PEA Aspartate carbamoyltransferase 1, chloroplastic OS=Pisum sativum GN=PYRB1 PE=2 SV=1 Length = 386
Score = 58.5 bits (140), Expect = 1e-08 Identities = 27/37 (72%), Positives = 28/37 (75%) Frame = -2
Query: 455 DEITVDVDSDPRAAYFRQAKNGLYIRMAXXXXXXKGW 345 DEI DVD+DPRAAYFRQAKNGLYIRMA GW Sbjct: 350 DEIEADVDNDPRAAYFRQAKNGLYIRMALLKVLLLGW 386
>sp|P08955|PYR1_MESAU CAD protein OS=Mesocricetus auratus GN=CAD PE=1 SV=4 Length = 2225
Score = 52.4 bits (124), Expect = 9e-07 Identities = 23/28 (82%), Positives = 28/28 (100%) Frame = -2
Query: 455 DEITVDVDSDPRAAYFRQAKNGLYIRMA 372 +EI+V+VDSDPRAAYFRQA+NG+YIRMA Sbjct: 2189 NEISVEVDSDPRAAYFRQAENGMYIRMA 2216
>sp|P27708|PYR1_HUMAN CAD protein OS=Homo sapiens GN=CAD PE=1 SV=3 Length = 2225
Score = 52.4 bits (124), Expect = 9e-07 Identities = 23/28 (82%), Positives = 28/28 (100%) Frame = -2
Query: 455 DEITVDVDSDPRAAYFRQAKNGLYIRMA 372 +EI+V+VDSDPRAAYFRQA+NG+YIRMA Sbjct: 2189 NEISVEVDSDPRAAYFRQAENGMYIRMA 2216
>sp|Q91437|PYR1_SQUAC CAD protein OS=Squalus acanthias GN=CAD PE=2 SV=1 Length = 2242
Score = 51.6 bits (122), Expect = 2e-06 Identities = 21/28 (75%), Positives = 28/28 (100%) Frame = -2
Query: 455 DEITVDVDSDPRAAYFRQAKNGLYIRMA 372 +E++V+VDSDPRAAYFRQA+NG+Y+RMA Sbjct: 2206 NEVSVEVDSDPRAAYFRQAENGMYVRMA 2233
>sp|P20054|PYR1_DICDI Protein PYR1-3 OS=Dictyostelium discoideum GN=pyr1-3 PE=2 SV=3 Length = 2225
Score = 47.4 bits (111), Expect = 3e-05 Identities = 20/28 (71%), Positives = 26/28 (92%) Frame = -2
Query: 455 DEITVDVDSDPRAAYFRQAKNGLYIRMA 372 +EI+ +VDSDPRAAYFRQ +NGLY+RM+ Sbjct: 2188 NEISPEVDSDPRAAYFRQMENGLYVRMS 2215
>sp|Q8G655|PYRB_BIFLO Aspartate carbamoyltransferase OS=Bifidobacterium longum GN=pyrB PE=3 SV=2 Length = 320
Score = 46.6 bits (109), Expect = 5e-05 Identities = 20/28 (71%), Positives = 23/28 (82%) Frame = -2
Query: 455 DEITVDVDSDPRAAYFRQAKNGLYIRMA 372 +EI VDVD DPRAAYF Q KNG+ +RMA Sbjct: 270 NEIAVDVDDDPRAAYFEQVKNGMLVRMA 297
>sp|P05990|PYR1_DROME CAD protein OS=Drosophila melanogaster GN=r PE=1 SV=3 Length = 2224
Score = 46.2 bits (108), Expect = 7e-05 Identities = 20/28 (71%), Positives = 26/28 (92%) Frame = -2
Query: 455 DEITVDVDSDPRAAYFRQAKNGLYIRMA 372 +EI+ ++DSDPRAAYFRQA+ G+YIRMA Sbjct: 2184 NEISREIDSDPRAAYFRQAEYGMYIRMA 2211
|
TrEMBL (release 39.9) |
Link to BlastX Result : TrEMBL |
tr_hit_id |
Q8L6B8 |
Definition |
tr|Q8L6B8|Q8L6B8_SOLTU Aspartate carbamoyltransferase OS=Solanum tuberosum |
Align length |
37 |
Score (bit) |
62.0 |
E-value |
1.0e-08 |
Report |
BLASTX 2.2.19 [Nov-02-2008]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402.
Query= BP918456|Adiantum capillus-veneris mRNA, clone: YMU001_000113_F11. (456 letters)
Database: uniprot_trembl.fasta 7,341,751 sequences; 2,391,615,440 total letters
Searching..................................................done
Score E Sequences producing significant alignments: (bits) Value
tr|Q8L6B8|Q8L6B8_SOLTU Aspartate carbamoyltransferase OS=Solanum... 62 1e-08 tr|Q09027|Q09027_SOLLC Aspartate carbamoyltransferase (Fragment)... 62 1e-08 tr|A9NUW0|A9NUW0_PICSI Putative uncharacterized protein OS=Picea... 60 5e-08 tr|Q9S983|Q9S983_WHEAT Aspartate carbamoyltransferase (Fragment)... 60 7e-08 tr|Q9LD61|Q9LD61_ORYSJ Os08g0248800 protein OS=Oryza sativa subs... 59 9e-08 tr|Q683J9|Q683J9_ARATH Aspartate carbamoyltransferase OS=Arabido... 59 9e-08 tr|B7FKH4|B7FKH4_MEDTR Putative uncharacterized protein OS=Medic... 59 9e-08 tr|A2YSY8|A2YSY8_ORYSI Putative uncharacterized protein OS=Oryza... 59 9e-08 tr|A7P0K7|A7P0K7_VITVI Chromosome chr19 scaffold_4, whole genome... 59 1e-07 tr|A9RZX3|A9RZX3_PHYPA Predicted protein OS=Physcomitrella paten... 59 2e-07 tr|B6T6Q7|B6T6Q7_MAIZE Aspartate carbamoyltransferase 1 OS=Zea m... 58 2e-07 tr|Q94A47|Q94A47_ARATH AT3g20330/MQC12_8 OS=Arabidopsis thaliana... 57 5e-07 tr|B6T7U2|B6T7U2_MAIZE Aspartate carbamoyltransferase 1 OS=Zea m... 57 6e-07 tr|A9TIM7|A9TIM7_PHYPA Predicted protein OS=Physcomitrella paten... 57 6e-07 tr|A8IAK9|A8IAK9_CHLRE Aspartate carbamoyltransferase OS=Chlamyd... 57 6e-07 tr|Q9CWQ9|Q9CWQ9_MOUSE Putative uncharacterized protein (Fragmen... 52 1e-05 tr|Q80VF8|Q80VF8_MOUSE Cad-pending protein (Fragment) OS=Mus mus... 52 1e-05 tr|B7ZN27|B7ZN27_MOUSE Putative uncharacterized protein OS=Mus m... 52 1e-05 tr|B2RQC6|B2RQC6_MOUSE Carbamoyl-phosphate synthetase 2, asparta... 52 1e-05 tr|Q96CK3|Q96CK3_HUMAN CAD protein (Fragment) OS=Homo sapiens GN... 52 1e-05 tr|Q53SY7|Q53SY7_HUMAN Putative uncharacterized protein CAD (Fra... 52 1e-05 tr|A4S6Z6|A4S6Z6_OSTLU Aspartate carbamoyltransferase OS=Ostreoc... 52 2e-05 tr|Q5XLV0|Q5XLV0_DANRE Carbamoyl-phosphate synthetase 2, asparta... 51 3e-05 tr|Q5EI67|Q5EI67_DANRE Carbamoyl-phosphate synthetase 2, asparta... 51 3e-05 tr|Q4SZL4|Q4SZL4_TETNG Chromosome 14 SCAF11586, whole genome sho... 51 3e-05 tr|A4QN94|A4QN94_XENTR LOC100125119 protein (Fragment) OS=Xenopu... 50 4e-05 tr|B4PXW0|B4PXW0_DROYA GE17287 OS=Drosophila yakuba GN=GE17287 P... 50 7e-05 tr|A7SF31|A7SF31_NEMVE Predicted protein OS=Nematostella vectens... 49 1e-04 tr|B7FRY0|B7FRY0_PHATR Predicted protein OS=Phaeodactylum tricor... 49 2e-04 tr|B0MNF0|B0MNF0_9FIRM Putative uncharacterized protein OS=Eubac... 48 2e-04
>tr|Q8L6B8|Q8L6B8_SOLTU Aspartate carbamoyltransferase OS=Solanum tuberosum GN=pyrB PE=2 SV=1 Length = 377
Score = 62.0 bits (149), Expect = 1e-08 Identities = 29/37 (78%), Positives = 29/37 (78%) Frame = -2
Query: 455 DEITVDVDSDPRAAYFRQAKNGLYIRMAXXXXXXKGW 345 DEITVDVD DPRAAYFRQAKNGLYIRMA GW Sbjct: 341 DEITVDVDGDPRAAYFRQAKNGLYIRMALLKLLLLGW 377
>tr|Q09027|Q09027_SOLLC Aspartate carbamoyltransferase (Fragment) OS=Solanum lycopersicum PE=2 SV=1 Length = 268
Score = 62.0 bits (149), Expect = 1e-08 Identities = 29/37 (78%), Positives = 29/37 (78%) Frame = -2
Query: 455 DEITVDVDSDPRAAYFRQAKNGLYIRMAXXXXXXKGW 345 DEITVDVD DPRAAYFRQAKNGLYIRMA GW Sbjct: 232 DEITVDVDGDPRAAYFRQAKNGLYIRMALLKLLLLGW 268
>tr|A9NUW0|A9NUW0_PICSI Putative uncharacterized protein OS=Picea sitchensis PE=2 SV=1 Length = 448
Score = 60.1 bits (144), Expect = 5e-08 Identities = 28/37 (75%), Positives = 29/37 (78%) Frame = -2
Query: 455 DEITVDVDSDPRAAYFRQAKNGLYIRMAXXXXXXKGW 345 DEI VDVD+DPRAAYFRQAKNGLYIRMA GW Sbjct: 412 DEIMVDVDTDPRAAYFRQAKNGLYIRMALLKLLLLGW 448
>tr|Q9S983|Q9S983_WHEAT Aspartate carbamoyltransferase (Fragment) OS=Triticum aestivum PE=3 SV=1 Length = 233
Score = 59.7 bits (143), Expect = 7e-08 Identities = 28/28 (100%), Positives = 28/28 (100%) Frame = -2
Query: 455 DEITVDVDSDPRAAYFRQAKNGLYIRMA 372 DEITVDVDSDPRAAYFRQAKNGLYIRMA Sbjct: 190 DEITVDVDSDPRAAYFRQAKNGLYIRMA 217
>tr|Q9LD61|Q9LD61_ORYSJ Os08g0248800 protein OS=Oryza sativa subsp. japonica GN=Os08g0248800 PE=2 SV=1 Length = 363
Score = 59.3 bits (142), Expect = 9e-08 Identities = 27/28 (96%), Positives = 28/28 (100%) Frame = -2
Query: 455 DEITVDVDSDPRAAYFRQAKNGLYIRMA 372 DEIT+DVDSDPRAAYFRQAKNGLYIRMA Sbjct: 327 DEITIDVDSDPRAAYFRQAKNGLYIRMA 354
>tr|Q683J9|Q683J9_ARATH Aspartate carbamoyltransferase OS=Arabidopsis thaliana GN=At3g20330 PE=2 SV=1 Length = 390
Score = 59.3 bits (142), Expect = 9e-08 Identities = 27/37 (72%), Positives = 29/37 (78%) Frame = -2
Query: 455 DEITVDVDSDPRAAYFRQAKNGLYIRMAXXXXXXKGW 345 DEIT DVD+DPRAAYFRQAKNGL+IRMA GW Sbjct: 354 DEITADVDADPRAAYFRQAKNGLFIRMALLKLLLVGW 390
>tr|B7FKH4|B7FKH4_MEDTR Putative uncharacterized protein OS=Medicago truncatula PE=2 SV=1 Length = 336
Score = 59.3 bits (142), Expect = 9e-08 Identities = 28/37 (75%), Positives = 29/37 (78%) Frame = -2
Query: 455 DEITVDVDSDPRAAYFRQAKNGLYIRMAXXXXXXKGW 345 DEITVDVD+DPRAAYFRQAK GLYIRMA GW Sbjct: 300 DEITVDVDADPRAAYFRQAKYGLYIRMAILKLLLVGW 336
>tr|A2YSY8|A2YSY8_ORYSI Putative uncharacterized protein OS=Oryza sativa subsp. indica GN=OsI_28439 PE=3 SV=1 Length = 363
Score = 59.3 bits (142), Expect = 9e-08 Identities = 27/28 (96%), Positives = 28/28 (100%) Frame = -2
Query: 455 DEITVDVDSDPRAAYFRQAKNGLYIRMA 372 DEIT+DVDSDPRAAYFRQAKNGLYIRMA Sbjct: 327 DEITIDVDSDPRAAYFRQAKNGLYIRMA 354
>tr|A7P0K7|A7P0K7_VITVI Chromosome chr19 scaffold_4, whole genome shotgun sequence OS=Vitis vinifera GN=GSVIVT00027272001 PE=3 SV=1 Length = 403
Score = 58.9 bits (141), Expect = 1e-07 Identities = 28/37 (75%), Positives = 28/37 (75%) Frame = -2
Query: 455 DEITVDVDSDPRAAYFRQAKNGLYIRMAXXXXXXKGW 345 DEITVDVD D RAAYFRQAKNGLYIRMA GW Sbjct: 367 DEITVDVDEDQRAAYFRQAKNGLYIRMALLKLLLVGW 403
>tr|A9RZX3|A9RZX3_PHYPA Predicted protein OS=Physcomitrella patens subsp. patens GN=PHYPADRAFT_121970 PE=3 SV=1 Length = 332
Score = 58.5 bits (140), Expect = 2e-07 Identities = 28/37 (75%), Positives = 30/37 (81%) Frame = -2
Query: 455 DEITVDVDSDPRAAYFRQAKNGLYIRMAXXXXXXKGW 345 DEITV+VDSDPRAAYFRQAKNGLYIRMA G+ Sbjct: 296 DEITVEVDSDPRAAYFRQAKNGLYIRMALLKLLLLGY 332
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