BP918456
Clone id YMU001_000113_F11
Library
Length 456
Definition Adiantum capillus-veneris mRNA. clone: YMU001_000113_F11.
Accession
Tissue type prothallium
Developmental stage -
Contig ID
Sequence
AGCCAGGAACCTTGTTCTGTTGCCTTTATAAACCGGCTGAAAAGTACATAAACCGGCCTG
CTTCTAGATTGTCTTAAAACTCTTCAGCTAAAACATTGTATGGATTCCTATGGCAGAACA
CTCTTAATTCAACCTTATGACATATTGGTGTCACTGTTTAACTTATAAGCAGTGTAACAG
AGGTGCTCTCTCAGAGCCCCTCAATTGTAACCAGTTGAGAAGTCATCCATTTGCTTGTTG
TAGGAGCCTTGTATTATATGACAATCCATCATGCAGCACGCACAGGCATGGAAAATACCA
TCAAAACTGCTTCAATTCATAGAATAAATAGCTTGTTGGCCTCACCAGCCTTTAAGAAGT
AGCTTCAGAAGCGCCATGCGAATATATAGCCCATTCTTGGCCTGACGAAAGTATGCAGCA
CGAGGATCGGAGTCCACATCGACAGTTATCTCATCA
■■Homology search results ■■ -
sp_hit_id P49077
Definition sp|P49077|PYRB_ARATH Aspartate carbamoyltransferase, chloroplastic OS=Arabidopsis thaliana
Align length 37
Score (bit) 59.3
E-value 8.0e-09
Report
BLASTX 2.2.19 [Nov-02-2008]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.

Query= BP918456|Adiantum capillus-veneris mRNA, clone:
YMU001_000113_F11.
(456 letters)

Database: uniprot_sprot.fasta
412,525 sequences; 148,809,765 total letters

Searching..................................................done



Score E
Sequences producing significant alignments: (bits) Value

sp|P49077|PYRB_ARATH Aspartate carbamoyltransferase, chloroplast... 59 8e-09
sp|Q43064|PYRB3_PEA Aspartate carbamoyltransferase 3, chloroplas... 59 8e-09
sp|Q43087|PYRB2_PEA Aspartate carbamoyltransferase 2, chloroplas... 59 8e-09
sp|Q43086|PYRB1_PEA Aspartate carbamoyltransferase 1, chloroplas... 59 1e-08
sp|P08955|PYR1_MESAU CAD protein OS=Mesocricetus auratus GN=CAD ... 52 9e-07
sp|P27708|PYR1_HUMAN CAD protein OS=Homo sapiens GN=CAD PE=1 SV=3 52 9e-07
sp|Q91437|PYR1_SQUAC CAD protein OS=Squalus acanthias GN=CAD PE=... 52 2e-06
sp|P20054|PYR1_DICDI Protein PYR1-3 OS=Dictyostelium discoideum ... 47 3e-05
sp|Q8G655|PYRB_BIFLO Aspartate carbamoyltransferase OS=Bifidobac... 47 5e-05
sp|P05990|PYR1_DROME CAD protein OS=Drosophila melanogaster GN=r... 46 7e-05
sp|Q18CS8|PYRB_CLOD6 Aspartate carbamoyltransferase OS=Clostridi... 45 1e-04
sp|A1A1F7|PYRB_BIFAA Aspartate carbamoyltransferase OS=Bifidobac... 44 3e-04
sp|Q97FS3|PYRB_CLOAB Aspartate carbamoyltransferase OS=Clostridi... 44 3e-04
sp|B0TPF3|PYRB3_SHEHH Aspartate carbamoyltransferase 3 OS=Shewan... 44 3e-04
sp|B0TST3|PYRB2_SHEHH Aspartate carbamoyltransferase 2 OS=Shewan... 44 3e-04
sp|B0TSQ4|PYRB1_SHEHH Aspartate carbamoyltransferase 1 OS=Shewan... 44 3e-04
sp|A5N2L8|PYRB_CLOK5 Aspartate carbamoyltransferase OS=Clostridi... 43 6e-04
sp|Q7P145|PYRB_CHRVO Aspartate carbamoyltransferase OS=Chromobac... 43 7e-04
sp|A7GII2|PYRB_CLOBL Aspartate carbamoyltransferase OS=Clostridi... 42 0.001
sp|A5I6X1|PYRB_CLOBH Aspartate carbamoyltransferase OS=Clostridi... 42 0.001
sp|A7FYJ2|PYRB_CLOB1 Aspartate carbamoyltransferase OS=Clostridi... 42 0.001
sp|Q87LF8|PYRB_VIBPA Aspartate carbamoyltransferase OS=Vibrio pa... 42 0.002
sp|Q6DA73|PYRB_ERWCT Aspartate carbamoyltransferase OS=Erwinia c... 42 0.002
sp|A8MIU1|PYRB_ALKOO Aspartate carbamoyltransferase OS=Alkaliphi... 42 0.002
sp|Q7MZ16|PYRB_PHOLL Aspartate carbamoyltransferase OS=Photorhab... 41 0.002
sp|A7MSE0|PYRB_VIBHB Aspartate carbamoyltransferase OS=Vibrio ha... 41 0.003
sp|A9KNJ3|PYRB_CLOPH Aspartate carbamoyltransferase OS=Clostridi... 40 0.004
sp|Q8XL59|PYRB_CLOPE Aspartate carbamoyltransferase OS=Clostridi... 40 0.005
sp|A6L5J9|PYRB_BACV8 Aspartate carbamoyltransferase OS=Bacteroid... 40 0.005
sp|Q7MHF1|PYRB_VIBVY Aspartate carbamoyltransferase OS=Vibrio vu... 40 0.006

>sp|P49077|PYRB_ARATH Aspartate carbamoyltransferase, chloroplastic
OS=Arabidopsis thaliana GN=PYRB PE=2 SV=2
Length = 390

Score = 59.3 bits (142), Expect = 8e-09
Identities = 27/37 (72%), Positives = 29/37 (78%)
Frame = -2

Query: 455 DEITVDVDSDPRAAYFRQAKNGLYIRMAXXXXXXKGW 345
DEIT DVD+DPRAAYFRQAKNGL+IRMA GW
Sbjct: 354 DEITADVDADPRAAYFRQAKNGLFIRMALLKLLLVGW 390


>sp|Q43064|PYRB3_PEA Aspartate carbamoyltransferase 3, chloroplastic
OS=Pisum sativum GN=PYRB3 PE=2 SV=1
Length = 391

Score = 59.3 bits (142), Expect = 8e-09
Identities = 28/37 (75%), Positives = 29/37 (78%)
Frame = -2

Query: 455 DEITVDVDSDPRAAYFRQAKNGLYIRMAXXXXXXKGW 345
DEITVDVD+DPRAAYFRQAK GLYIRMA GW
Sbjct: 355 DEITVDVDADPRAAYFRQAKYGLYIRMALLKLLLVGW 391


>sp|Q43087|PYRB2_PEA Aspartate carbamoyltransferase 2, chloroplastic
OS=Pisum sativum GN=PYRB2 PE=2 SV=1
Length = 385

Score = 59.3 bits (142), Expect = 8e-09
Identities = 28/37 (75%), Positives = 29/37 (78%)
Frame = -2

Query: 455 DEITVDVDSDPRAAYFRQAKNGLYIRMAXXXXXXKGW 345
DEITVDVD+DPRAAYFRQAK GLYIRMA GW
Sbjct: 349 DEITVDVDADPRAAYFRQAKYGLYIRMALLKLLLVGW 385


>sp|Q43086|PYRB1_PEA Aspartate carbamoyltransferase 1, chloroplastic
OS=Pisum sativum GN=PYRB1 PE=2 SV=1
Length = 386

Score = 58.5 bits (140), Expect = 1e-08
Identities = 27/37 (72%), Positives = 28/37 (75%)
Frame = -2

Query: 455 DEITVDVDSDPRAAYFRQAKNGLYIRMAXXXXXXKGW 345
DEI DVD+DPRAAYFRQAKNGLYIRMA GW
Sbjct: 350 DEIEADVDNDPRAAYFRQAKNGLYIRMALLKVLLLGW 386


>sp|P08955|PYR1_MESAU CAD protein OS=Mesocricetus auratus GN=CAD PE=1
SV=4
Length = 2225

Score = 52.4 bits (124), Expect = 9e-07
Identities = 23/28 (82%), Positives = 28/28 (100%)
Frame = -2

Query: 455 DEITVDVDSDPRAAYFRQAKNGLYIRMA 372
+EI+V+VDSDPRAAYFRQA+NG+YIRMA
Sbjct: 2189 NEISVEVDSDPRAAYFRQAENGMYIRMA 2216


>sp|P27708|PYR1_HUMAN CAD protein OS=Homo sapiens GN=CAD PE=1 SV=3
Length = 2225

Score = 52.4 bits (124), Expect = 9e-07
Identities = 23/28 (82%), Positives = 28/28 (100%)
Frame = -2

Query: 455 DEITVDVDSDPRAAYFRQAKNGLYIRMA 372
+EI+V+VDSDPRAAYFRQA+NG+YIRMA
Sbjct: 2189 NEISVEVDSDPRAAYFRQAENGMYIRMA 2216


>sp|Q91437|PYR1_SQUAC CAD protein OS=Squalus acanthias GN=CAD PE=2
SV=1
Length = 2242

Score = 51.6 bits (122), Expect = 2e-06
Identities = 21/28 (75%), Positives = 28/28 (100%)
Frame = -2

Query: 455 DEITVDVDSDPRAAYFRQAKNGLYIRMA 372
+E++V+VDSDPRAAYFRQA+NG+Y+RMA
Sbjct: 2206 NEVSVEVDSDPRAAYFRQAENGMYVRMA 2233


>sp|P20054|PYR1_DICDI Protein PYR1-3 OS=Dictyostelium discoideum
GN=pyr1-3 PE=2 SV=3
Length = 2225

Score = 47.4 bits (111), Expect = 3e-05
Identities = 20/28 (71%), Positives = 26/28 (92%)
Frame = -2

Query: 455 DEITVDVDSDPRAAYFRQAKNGLYIRMA 372
+EI+ +VDSDPRAAYFRQ +NGLY+RM+
Sbjct: 2188 NEISPEVDSDPRAAYFRQMENGLYVRMS 2215


>sp|Q8G655|PYRB_BIFLO Aspartate carbamoyltransferase
OS=Bifidobacterium longum GN=pyrB PE=3 SV=2
Length = 320

Score = 46.6 bits (109), Expect = 5e-05
Identities = 20/28 (71%), Positives = 23/28 (82%)
Frame = -2

Query: 455 DEITVDVDSDPRAAYFRQAKNGLYIRMA 372
+EI VDVD DPRAAYF Q KNG+ +RMA
Sbjct: 270 NEIAVDVDDDPRAAYFEQVKNGMLVRMA 297


>sp|P05990|PYR1_DROME CAD protein OS=Drosophila melanogaster GN=r PE=1
SV=3
Length = 2224

Score = 46.2 bits (108), Expect = 7e-05
Identities = 20/28 (71%), Positives = 26/28 (92%)
Frame = -2

Query: 455 DEITVDVDSDPRAAYFRQAKNGLYIRMA 372
+EI+ ++DSDPRAAYFRQA+ G+YIRMA
Sbjct: 2184 NEISREIDSDPRAAYFRQAEYGMYIRMA 2211


tr_hit_id Q8L6B8
Definition tr|Q8L6B8|Q8L6B8_SOLTU Aspartate carbamoyltransferase OS=Solanum tuberosum
Align length 37
Score (bit) 62.0
E-value 1.0e-08
Report
BLASTX 2.2.19 [Nov-02-2008]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.

Query= BP918456|Adiantum capillus-veneris mRNA, clone:
YMU001_000113_F11.
(456 letters)

Database: uniprot_trembl.fasta
7,341,751 sequences; 2,391,615,440 total letters

Searching..................................................done



Score E
Sequences producing significant alignments: (bits) Value

tr|Q8L6B8|Q8L6B8_SOLTU Aspartate carbamoyltransferase OS=Solanum... 62 1e-08
tr|Q09027|Q09027_SOLLC Aspartate carbamoyltransferase (Fragment)... 62 1e-08
tr|A9NUW0|A9NUW0_PICSI Putative uncharacterized protein OS=Picea... 60 5e-08
tr|Q9S983|Q9S983_WHEAT Aspartate carbamoyltransferase (Fragment)... 60 7e-08
tr|Q9LD61|Q9LD61_ORYSJ Os08g0248800 protein OS=Oryza sativa subs... 59 9e-08
tr|Q683J9|Q683J9_ARATH Aspartate carbamoyltransferase OS=Arabido... 59 9e-08
tr|B7FKH4|B7FKH4_MEDTR Putative uncharacterized protein OS=Medic... 59 9e-08
tr|A2YSY8|A2YSY8_ORYSI Putative uncharacterized protein OS=Oryza... 59 9e-08
tr|A7P0K7|A7P0K7_VITVI Chromosome chr19 scaffold_4, whole genome... 59 1e-07
tr|A9RZX3|A9RZX3_PHYPA Predicted protein OS=Physcomitrella paten... 59 2e-07
tr|B6T6Q7|B6T6Q7_MAIZE Aspartate carbamoyltransferase 1 OS=Zea m... 58 2e-07
tr|Q94A47|Q94A47_ARATH AT3g20330/MQC12_8 OS=Arabidopsis thaliana... 57 5e-07
tr|B6T7U2|B6T7U2_MAIZE Aspartate carbamoyltransferase 1 OS=Zea m... 57 6e-07
tr|A9TIM7|A9TIM7_PHYPA Predicted protein OS=Physcomitrella paten... 57 6e-07
tr|A8IAK9|A8IAK9_CHLRE Aspartate carbamoyltransferase OS=Chlamyd... 57 6e-07
tr|Q9CWQ9|Q9CWQ9_MOUSE Putative uncharacterized protein (Fragmen... 52 1e-05
tr|Q80VF8|Q80VF8_MOUSE Cad-pending protein (Fragment) OS=Mus mus... 52 1e-05
tr|B7ZN27|B7ZN27_MOUSE Putative uncharacterized protein OS=Mus m... 52 1e-05
tr|B2RQC6|B2RQC6_MOUSE Carbamoyl-phosphate synthetase 2, asparta... 52 1e-05
tr|Q96CK3|Q96CK3_HUMAN CAD protein (Fragment) OS=Homo sapiens GN... 52 1e-05
tr|Q53SY7|Q53SY7_HUMAN Putative uncharacterized protein CAD (Fra... 52 1e-05
tr|A4S6Z6|A4S6Z6_OSTLU Aspartate carbamoyltransferase OS=Ostreoc... 52 2e-05
tr|Q5XLV0|Q5XLV0_DANRE Carbamoyl-phosphate synthetase 2, asparta... 51 3e-05
tr|Q5EI67|Q5EI67_DANRE Carbamoyl-phosphate synthetase 2, asparta... 51 3e-05
tr|Q4SZL4|Q4SZL4_TETNG Chromosome 14 SCAF11586, whole genome sho... 51 3e-05
tr|A4QN94|A4QN94_XENTR LOC100125119 protein (Fragment) OS=Xenopu... 50 4e-05
tr|B4PXW0|B4PXW0_DROYA GE17287 OS=Drosophila yakuba GN=GE17287 P... 50 7e-05
tr|A7SF31|A7SF31_NEMVE Predicted protein OS=Nematostella vectens... 49 1e-04
tr|B7FRY0|B7FRY0_PHATR Predicted protein OS=Phaeodactylum tricor... 49 2e-04
tr|B0MNF0|B0MNF0_9FIRM Putative uncharacterized protein OS=Eubac... 48 2e-04

>tr|Q8L6B8|Q8L6B8_SOLTU Aspartate carbamoyltransferase OS=Solanum
tuberosum GN=pyrB PE=2 SV=1
Length = 377

Score = 62.0 bits (149), Expect = 1e-08
Identities = 29/37 (78%), Positives = 29/37 (78%)
Frame = -2

Query: 455 DEITVDVDSDPRAAYFRQAKNGLYIRMAXXXXXXKGW 345
DEITVDVD DPRAAYFRQAKNGLYIRMA GW
Sbjct: 341 DEITVDVDGDPRAAYFRQAKNGLYIRMALLKLLLLGW 377


>tr|Q09027|Q09027_SOLLC Aspartate carbamoyltransferase (Fragment)
OS=Solanum lycopersicum PE=2 SV=1
Length = 268

Score = 62.0 bits (149), Expect = 1e-08
Identities = 29/37 (78%), Positives = 29/37 (78%)
Frame = -2

Query: 455 DEITVDVDSDPRAAYFRQAKNGLYIRMAXXXXXXKGW 345
DEITVDVD DPRAAYFRQAKNGLYIRMA GW
Sbjct: 232 DEITVDVDGDPRAAYFRQAKNGLYIRMALLKLLLLGW 268


>tr|A9NUW0|A9NUW0_PICSI Putative uncharacterized protein OS=Picea
sitchensis PE=2 SV=1
Length = 448

Score = 60.1 bits (144), Expect = 5e-08
Identities = 28/37 (75%), Positives = 29/37 (78%)
Frame = -2

Query: 455 DEITVDVDSDPRAAYFRQAKNGLYIRMAXXXXXXKGW 345
DEI VDVD+DPRAAYFRQAKNGLYIRMA GW
Sbjct: 412 DEIMVDVDTDPRAAYFRQAKNGLYIRMALLKLLLLGW 448


>tr|Q9S983|Q9S983_WHEAT Aspartate carbamoyltransferase (Fragment)
OS=Triticum aestivum PE=3 SV=1
Length = 233

Score = 59.7 bits (143), Expect = 7e-08
Identities = 28/28 (100%), Positives = 28/28 (100%)
Frame = -2

Query: 455 DEITVDVDSDPRAAYFRQAKNGLYIRMA 372
DEITVDVDSDPRAAYFRQAKNGLYIRMA
Sbjct: 190 DEITVDVDSDPRAAYFRQAKNGLYIRMA 217


>tr|Q9LD61|Q9LD61_ORYSJ Os08g0248800 protein OS=Oryza sativa subsp.
japonica GN=Os08g0248800 PE=2 SV=1
Length = 363

Score = 59.3 bits (142), Expect = 9e-08
Identities = 27/28 (96%), Positives = 28/28 (100%)
Frame = -2

Query: 455 DEITVDVDSDPRAAYFRQAKNGLYIRMA 372
DEIT+DVDSDPRAAYFRQAKNGLYIRMA
Sbjct: 327 DEITIDVDSDPRAAYFRQAKNGLYIRMA 354


>tr|Q683J9|Q683J9_ARATH Aspartate carbamoyltransferase
OS=Arabidopsis thaliana GN=At3g20330 PE=2 SV=1
Length = 390

Score = 59.3 bits (142), Expect = 9e-08
Identities = 27/37 (72%), Positives = 29/37 (78%)
Frame = -2

Query: 455 DEITVDVDSDPRAAYFRQAKNGLYIRMAXXXXXXKGW 345
DEIT DVD+DPRAAYFRQAKNGL+IRMA GW
Sbjct: 354 DEITADVDADPRAAYFRQAKNGLFIRMALLKLLLVGW 390


>tr|B7FKH4|B7FKH4_MEDTR Putative uncharacterized protein OS=Medicago
truncatula PE=2 SV=1
Length = 336

Score = 59.3 bits (142), Expect = 9e-08
Identities = 28/37 (75%), Positives = 29/37 (78%)
Frame = -2

Query: 455 DEITVDVDSDPRAAYFRQAKNGLYIRMAXXXXXXKGW 345
DEITVDVD+DPRAAYFRQAK GLYIRMA GW
Sbjct: 300 DEITVDVDADPRAAYFRQAKYGLYIRMAILKLLLVGW 336


>tr|A2YSY8|A2YSY8_ORYSI Putative uncharacterized protein OS=Oryza
sativa subsp. indica GN=OsI_28439 PE=3 SV=1
Length = 363

Score = 59.3 bits (142), Expect = 9e-08
Identities = 27/28 (96%), Positives = 28/28 (100%)
Frame = -2

Query: 455 DEITVDVDSDPRAAYFRQAKNGLYIRMA 372
DEIT+DVDSDPRAAYFRQAKNGLYIRMA
Sbjct: 327 DEITIDVDSDPRAAYFRQAKNGLYIRMA 354


>tr|A7P0K7|A7P0K7_VITVI Chromosome chr19 scaffold_4, whole genome
shotgun sequence OS=Vitis vinifera GN=GSVIVT00027272001
PE=3 SV=1
Length = 403

Score = 58.9 bits (141), Expect = 1e-07
Identities = 28/37 (75%), Positives = 28/37 (75%)
Frame = -2

Query: 455 DEITVDVDSDPRAAYFRQAKNGLYIRMAXXXXXXKGW 345
DEITVDVD D RAAYFRQAKNGLYIRMA GW
Sbjct: 367 DEITVDVDEDQRAAYFRQAKNGLYIRMALLKLLLVGW 403


>tr|A9RZX3|A9RZX3_PHYPA Predicted protein OS=Physcomitrella patens
subsp. patens GN=PHYPADRAFT_121970 PE=3 SV=1
Length = 332

Score = 58.5 bits (140), Expect = 2e-07
Identities = 28/37 (75%), Positives = 30/37 (81%)
Frame = -2

Query: 455 DEITVDVDSDPRAAYFRQAKNGLYIRMAXXXXXXKGW 345
DEITV+VDSDPRAAYFRQAKNGLYIRMA G+
Sbjct: 296 DEITVEVDSDPRAAYFRQAKNGLYIRMALLKLLLLGY 332