BP918458 |
Clone id |
YMU001_000113_G01 |
Library |
YMU01 |
Length |
479 |
Definition |
Adiantum capillus-veneris mRNA. clone: YMU001_000113_G01. |
Accession |
BP918458 |
Tissue type |
prothallium |
Developmental stage |
- |
Contig ID |
CL2714Contig1 |
Sequence |
GATACAGGATGCTCGCAGTACAGACTCCTTGGCCTCACGGTATAAAGCGCCTTTACCCCA ATGAGGCTACATGCAGCAACATTTTCTACGGAGAGGCGCAAGGAAGAGACAACAAGGAGA GACCTTACTGCACAGGATGAAGATCCTTTTGATCCTCTGACAGACAAGATTCCTGAGAAG CCAGTATCTTTTGCAGAAGGTGCCTCATATAGTGTTGCCATATTGGCTGGCTTTGCCGTA GCTGCTGCAGCAGCATATGCTGTCTTCAAGGAGCTGATATTTGAACCCAAAGAGTATAAA GTCTTCAACAAAGCCTTGGATAGAGTTCAGCATGATAATCAGGTTACCGTACGCATTGGC CTTCCTGTAACTGGGTATGGGCAGGACAGTCGCAACAGAGCAGCCCGGCAACGAATCCCT CACCGTACATGGGCTGATGAAGATGGTGTAGAGCGAATTGAGGTACAATTTTATGTTCG |
■■Homology search results ■■ |
- |
Swiss-Prot (release 56.9) |
Link to BlastX Result : Swiss-Prot |
sp_hit_id |
Q5XKA2 |
Definition |
sp|Q5XKA2|TI21L_XENLA TIM21-like protein, mitochondrial OS=Xenopus laevis |
Align length |
71 |
Score (bit) |
43.5 |
E-value |
0.0005 |
Report |
BLASTX 2.2.19 [Nov-02-2008]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402.
Query= BP918458|Adiantum capillus-veneris mRNA, clone: YMU001_000113_G01. (479 letters)
Database: uniprot_sprot.fasta 412,525 sequences; 148,809,765 total letters
Searching..................................................done
Score E Sequences producing significant alignments: (bits) Value
sp|Q5XKA2|TI21L_XENLA TIM21-like protein, mitochondrial OS=Xenop... 44 5e-04 sp|Q5U2X7|TI21L_RAT TIM21-like protein, mitochondrial OS=Rattus ... 44 5e-04 sp|Q3SZV6|TI21L_BOVIN TIM21-like protein, mitochondrial OS=Bos t... 41 0.002 sp|Q9BVV7|TI21L_HUMAN TIM21-like protein, mitochondrial OS=Homo ... 37 0.046 sp|Q4KUS1|WFDC8_MOUSE WAP four-disulfide core domain protein 8 O... 32 1.9 sp|Q6CAQ9|TIM21_YARLI Mitochondrial import inner membrane transl... 32 1.9 sp|P60901|PSA6_RAT Proteasome subunit alpha type-6 OS=Rattus nor... 30 4.3 sp|P60900|PSA6_HUMAN Proteasome subunit alpha type-6 OS=Homo sap... 30 4.3 sp|Q2YDE4|PSA6_BOVIN Proteasome subunit alpha type-6 OS=Bos taur... 30 4.3 sp|Q9QUM9|PSA6_MOUSE Proteasome subunit alpha type-6 OS=Mus musc... 30 5.6 sp|O93574|RELN_CHICK Reelin (Fragment) OS=Gallus gallus GN=RELN ... 30 7.4 sp|Q28HF6|LNP_XENTR Protein lunapark OS=Xenopus tropicalis GN=ln... 30 7.4 sp|Q9NY15|STAB1_HUMAN Stabilin-1 OS=Homo sapiens GN=STAB1 PE=1 SV=2 29 9.6 sp|Q6DFJ8|LNP_XENLA Protein lunapark OS=Xenopus laevis GN=lnp PE... 29 9.6
>sp|Q5XKA2|TI21L_XENLA TIM21-like protein, mitochondrial OS=Xenopus laevis PE=2 SV=1 Length = 232
Score = 43.5 bits (101), Expect = 5e-04 Identities = 21/71 (29%), Positives = 41/71 (57%) Frame = +1
Query: 265 FKELIFEPKEYKVFNKALDRVQHDNQVTVRIGLPVTGYGQDSRNRAARQRIPHRTWADED 444 F+EL K++ +AL++ + +V G P+ GYG+ +R R RQ + H + +D Sbjct: 117 FEELFSSSSPSKIYGEALEKCRSHPEVIGAFGEPIKGYGETTR-RGRRQHVSHMEFV-KD 174
Query: 445 GVERIEVQFYV 477 G++ + ++FY+ Sbjct: 175 GIKCMRLKFYI 185
>sp|Q5U2X7|TI21L_RAT TIM21-like protein, mitochondrial OS=Rattus norvegicus PE=2 SV=1 Length = 245
Score = 43.5 bits (101), Expect = 5e-04 Identities = 26/71 (36%), Positives = 40/71 (56%) Frame = +1
Query: 265 FKELIFEPKEYKVFNKALDRVQHDNQVTVRIGLPVTGYGQDSRNRAARQRIPHRTWADED 444 FKEL ++ KAL + + +V G PV GYG+ SR R RQ + +A+ + Sbjct: 128 FKELFSSSSPNIIYGKALGKCRTHPEVISVFGEPVKGYGEMSR-RGRRQHVSFTEYAN-N 185
Query: 445 GVERIEVQFYV 477 G++RI V+FY+ Sbjct: 186 GLKRIRVKFYI 196
>sp|Q3SZV6|TI21L_BOVIN TIM21-like protein, mitochondrial OS=Bos taurus PE=2 SV=1 Length = 244
Score = 41.2 bits (95), Expect = 0.002 Identities = 23/71 (32%), Positives = 40/71 (56%) Frame = +1
Query: 265 FKELIFEPKEYKVFNKALDRVQHDNQVTVRIGLPVTGYGQDSRNRAARQRIPHRTWADED 444 F+EL K++ KAL++ + +V G PV GYG+ +R R RQ + + +D Sbjct: 129 FRELFSSSSPNKIYGKALEKCRSHPEVISVFGEPVKGYGEVTR-RGRRQLVSFIEY-KKD 186
Query: 445 GVERIEVQFYV 477 G++ + V+FY+ Sbjct: 187 GLKHMRVKFYI 197
>sp|Q9BVV7|TI21L_HUMAN TIM21-like protein, mitochondrial OS=Homo sapiens GN=C18orf55 PE=2 SV=1 Length = 248
Score = 37.0 bits (84), Expect = 0.046 Identities = 22/71 (30%), Positives = 38/71 (53%) Frame = +1
Query: 265 FKELIFEPKEYKVFNKALDRVQHDNQVTVRIGLPVTGYGQDSRNRAARQRIPHRTWADED 444 FKEL K++ +AL++ + +V G V GYG+ +R R RQ + + +D Sbjct: 129 FKELFSSSSPSKIYGRALEKCRSHPEVIGVFGESVKGYGEVTR-RGRRQHVRFTEYV-KD 186
Query: 445 GVERIEVQFYV 477 G++ V+FY+ Sbjct: 187 GLKHTCVKFYI 197
>sp|Q4KUS1|WFDC8_MOUSE WAP four-disulfide core domain protein 8 OS=Mus musculus GN=Wfdc8 PE=2 SV=1 Length = 273
Score = 31.6 bits (70), Expect = 1.9 Identities = 19/46 (41%), Positives = 23/46 (50%), Gaps = 3/46 (6%) Frame = -3
Query: 204 GTFCKRYWLLRNLVCQRIKRIFILCSKV-SPCCL--FLAPLRRKCC 76 G C R WL++ C R I+CSK+ P CL PL KCC Sbjct: 219 GFICARVWLVKTGFCPRKP---IVCSKIDKPKCLQDIDCPLDEKCC 261
>sp|Q6CAQ9|TIM21_YARLI Mitochondrial import inner membrane translocase subunit TIM21 OS=Yarrowia lipolytica GN=TIM21 PE=3 SV=1 Length = 269
Score = 31.6 bits (70), Expect = 1.9 Identities = 18/70 (25%), Positives = 34/70 (48%), Gaps = 1/70 (1%) Frame = +1
Query: 271 ELIFEPKEYKVFNKALDRVQHDNQVTVRIGLPVTGYGQDSRNRAARQRIP-HRTWADEDG 447 EL+ + ++FN+A ++ + V +G ++ G+ R R + P + D+ G Sbjct: 130 ELVMPSGDVRIFNRAFKEIEKNEDVMRVLGGQLSSMGEGGGGRWGRNQPPVSKRGIDKYG 189
Query: 448 VERIEVQFYV 477 E I + FYV Sbjct: 190 REHIWMNFYV 199
>sp|P60901|PSA6_RAT Proteasome subunit alpha type-6 OS=Rattus norvegicus GN=Psma6 PE=1 SV=1 Length = 246
Score = 30.4 bits (67), Expect = 4.3 Identities = 20/54 (37%), Positives = 27/54 (50%), Gaps = 2/54 (3%) Frame = +1
Query: 298 KVFNKALDR--VQHDNQVTVRIGLPVTGYGQDSRNRAARQRIPHRTWADEDGVE 453 KV +K LD V H ++T IG +TG DSR++ R R W + G E Sbjct: 55 KVPDKLLDSSTVTHLFKITENIGCVMTGMTADSRSQVQRARYEAANWKYKYGYE 108
>sp|P60900|PSA6_HUMAN Proteasome subunit alpha type-6 OS=Homo sapiens GN=PSMA6 PE=1 SV=1 Length = 246
Score = 30.4 bits (67), Expect = 4.3 Identities = 20/54 (37%), Positives = 27/54 (50%), Gaps = 2/54 (3%) Frame = +1
Query: 298 KVFNKALDR--VQHDNQVTVRIGLPVTGYGQDSRNRAARQRIPHRTWADEDGVE 453 KV +K LD V H ++T IG +TG DSR++ R R W + G E Sbjct: 55 KVPDKLLDSSTVTHLFKITENIGCVMTGMTADSRSQVQRARYEAANWKYKYGYE 108
>sp|Q2YDE4|PSA6_BOVIN Proteasome subunit alpha type-6 OS=Bos taurus GN=PSMA6 PE=1 SV=1 Length = 246
Score = 30.4 bits (67), Expect = 4.3 Identities = 20/54 (37%), Positives = 27/54 (50%), Gaps = 2/54 (3%) Frame = +1
Query: 298 KVFNKALDR--VQHDNQVTVRIGLPVTGYGQDSRNRAARQRIPHRTWADEDGVE 453 KV +K LD V H ++T IG +TG DSR++ R R W + G E Sbjct: 55 KVPDKLLDSSTVTHLFKITENIGCVMTGMTADSRSQVQRARYEAANWKYKYGYE 108
>sp|Q9QUM9|PSA6_MOUSE Proteasome subunit alpha type-6 OS=Mus musculus GN=Psma6 PE=1 SV=1 Length = 246
Score = 30.0 bits (66), Expect = 5.6 Identities = 20/54 (37%), Positives = 27/54 (50%), Gaps = 2/54 (3%) Frame = +1
Query: 298 KVFNKALDR--VQHDNQVTVRIGLPVTGYGQDSRNRAARQRIPHRTWADEDGVE 453 KV +K LD V H ++T IG +TG DSR++ R R W + G E Sbjct: 55 KVPDKLLDSSTVTHLFKITESIGCVMTGMTADSRSQVQRARYEAANWKYKYGYE 108
|
TrEMBL (release 39.9) |
Link to BlastX Result : TrEMBL |
tr_hit_id |
Q10NZ2 |
Definition |
tr|Q10NZ2|Q10NZ2_ORYSJ Expressed protein OS=Oryza sativa subsp. japonica |
Align length |
113 |
Score (bit) |
150.0 |
E-value |
2.0e-35 |
Report |
|