NBDC - アーカイブトップ - ヘルプ
データベースの説明 | データ項目の説明 | ダウンロード | 利用許諾 | ヘルプ
AcEST | BlastX Result : Swiss-Prot | BlastX Result : TrEMBL | AcESTcontig | About Libraries
NBDC - LSDB Archive
Description of this DB | Description of data items | Download | License
AcEST | BlastX Result : Swiss-Prot | BlastX Result : TrEMBL | AcESTcontig | About Libraries
BP918459
Clone id YMU001_000113_G02
Library
Length 467
Definition Adiantum capillus-veneris mRNA. clone: YMU001_000113_G02.
Accession
Tissue type prothallium
Developmental stage -
Contig ID -
Sequence 
CATGGCAATCATTGAACTTCCAGCATTATCCGACTCCTAAGCTGGCCTGGCAAGGACAGC
AGCAGAACGTCAATTATCATCAGGGTGGCACGGTTTCTTCATACCTTGAGTAAGGAAGAG
TAGGCCTACAACGGTGGTAGTCGACACAGATGCTTGCCTTGTAATATAAGGCGCAGAGCA
GCTGCCGCAAATTTGCAAGATATTTAAAACTCAGAGCAGTCTCAGAAATTTACAAATGGC
ATGGAGCTGGGAAGGGCTGGACCACACAAGCTGTGTAAAATTGATGATGGCAATGGCAAG
CAATCTACAGAATGTTGCTTCAAGATCCCCTTCACAAGACATGCTATTAGCTCTCATTCT
GCTTTCAACAGCAATGTTAGGCAAGCTAATTTACCCAATATTGCGCGAGCTAACCAGCCG
GCCATCCCTGCAACATCATATATCATATATCTACTGCCAAATGTAAG
■■Homology search results ■■ -
sp_hit_id A7ZCZ7
Definition sp|A7ZCZ7|PUR9_CAMC1 Bifunctional purine biosynthesis protein purH OS=Campylobacter concisus (strain 13826)
Align length 34
Score (bit) 29.6
E-value 6.8
Report 
BLASTX 2.2.19 [Nov-02-2008]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= BP918459|Adiantum capillus-veneris mRNA, clone:
YMU001_000113_G02.
         (467 letters)

Database: uniprot_sprot.fasta 
           412,525 sequences; 148,809,765 total letters

Searching..................................................done



                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

sp|A7ZCZ7|PUR9_CAMC1 Bifunctional purine biosynthesis protein pu...    30   6.8  
sp|Q9D3S5|CN148_MOUSE Pyrroline-5-carboxylate reductase-like pro...    29   8.9  

>sp|A7ZCZ7|PUR9_CAMC1 Bifunctional purine biosynthesis protein purH
           OS=Campylobacter concisus (strain 13826) GN=purH PE=3
           SV=1
          Length = 510

 Score = 29.6 bits (65), Expect = 6.8
 Identities = 13/34 (38%), Positives = 20/34 (58%)
 Frame = +2

Query: 176 EQLPQICKIFKTQSSLRNLQMAWSWEGLDHTSCV 277
           E + Q+ K F T S L++ Q+AW    L  ++CV
Sbjct: 380 ENMKQMSKKFATGSELKDAQIAWKVAALTKSNCV 413


>sp|Q9D3S5|CN148_MOUSE Pyrroline-5-carboxylate reductase-like
           protein C14orf148 homolog OS=Mus musculus PE=2 SV=1
          Length = 366

 Score = 29.3 bits (64), Expect = 8.9
 Identities = 10/23 (43%), Positives = 17/23 (73%)
 Frame = +2

Query: 395 PILRELTSRPSLQHHISYIYCQM 463
           P  + +++ PSLQ HIS +YC++
Sbjct: 320 PFSQHISATPSLQDHISLLYCEV 342
tr_hit_id -
Definition No hits.
Align length -
Score (bit) -
E-value -
Report 
BLASTX 2.2.19 [Nov-02-2008]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= BP918459|Adiantum capillus-veneris mRNA, clone:
YMU001_000113_G02.
         (467 letters)

Database: uniprot_trembl.fasta 
           7,341,751 sequences; 2,391,615,440 total letters

Searching..................................................done

 ***** No hits found ******