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AcEST | BlastX Result : Swiss-Prot | BlastX Result : TrEMBL | AcESTcontig | About Libraries
NBDC - LSDB Archive
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AcEST | BlastX Result : Swiss-Prot | BlastX Result : TrEMBL | AcESTcontig | About Libraries
BP918463
Clone id YMU001_000113_G07
Library
Length 428
Definition Adiantum capillus-veneris mRNA. clone: YMU001_000113_G07.
Accession
Tissue type prothallium
Developmental stage -
Contig ID -
Sequence 
ATTGAAGCATCTACTCCTGGTGTAAAAAGAATGTCCTCATGCTCACTGTTAAAGGCATGC
ATTATGAGGAGCTTCTCGCCCCCAGTTTCAGGAGTAAAGAGCACAGATTAATTGGCTATT
GGCGAGCCGGTGACATTTATAAATTGTTTATCAGAGAAGTGCTGCTACAGATTAAATCAA
AGTGTTACATATACCTGGCCCAAGGCGGACATTACCCTGGAGGTGGCCTATCACCCAATA
TATGCAGCCAGCATTGTGTACTCCACATTCTCTAACCAGCATTCCTCACCACCTTTTGTT
GAGTAGCACTAAGATCATGTCAGAATGACTCTTTCTGTAGCATTATAGTGCCCATGTATA
TGTCAATTATGTAGCGTAAGGCATGTACATGGCAATCAGAAAGGCCTTTTGGGCGCAAGG
TCTGACTG
■■Homology search results ■■ -
sp_hit_id Q73HW7
Definition sp|Q73HW7|SYI_WOLPM Isoleucyl-tRNA synthetase OS=Wolbachia pipientis wMel
Align length 50
Score (bit) 29.6
E-value 5.3
Report 
BLASTX 2.2.19 [Nov-02-2008]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= BP918463|Adiantum capillus-veneris mRNA, clone:
YMU001_000113_G07.
         (428 letters)

Database: uniprot_sprot.fasta 
           412,525 sequences; 148,809,765 total letters

Searching..................................................done



                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

sp|Q73HW7|SYI_WOLPM Isoleucyl-tRNA synthetase OS=Wolbachia pipie...    30   5.3  
sp|Q76E23|IF4G1_ARATH Eukaryotic translation initiation factor 4...    30   5.3  
sp|Q97RQ6|Y742_STRPN UPF0230 protein SP_0742 OS=Streptococcus pn...    29   7.0  
sp|Q8DQI6|Y652_STRR6 UPF0230 protein spr0652 OS=Streptococcus pn...    29   7.0  
sp|Q5GSS3|SYI_WOLTR Isoleucyl-tRNA synthetase OS=Wolbachia sp. s...    29   9.1  
sp|Q0IDE3|SFSA_SYNS3 Sugar fermentation stimulation protein homo...    29   9.1  
sp|P20871|ENV_HV1JR Envelope glycoprotein gp160 OS=Human immunod...    29   9.1  
sp|Q54J08|ACAC_DICDI Acetyl-CoA carboxylase OS=Dictyostelium dis...    29   9.1  

>sp|Q73HW7|SYI_WOLPM Isoleucyl-tRNA synthetase OS=Wolbachia
           pipientis wMel GN=ileS PE=3 SV=1
          Length = 1111

 Score = 29.6 bits (65), Expect = 5.3
 Identities = 15/50 (30%), Positives = 27/50 (54%), Gaps = 1/50 (2%)
 Frame = +3

Query: 48  VKGMHYEELLA-PSFRSKEHRLIGYWRAGDIYKLFIREVLLQIKSKCYIY 194
           +K  HY + ++ P F S E  +I +W+     K+F R V  + K  C+++
Sbjct: 1   MKSKHYPDTVSSPDFLSLEKEIIKFWQEN---KVFERSVEERSKDNCFVF 47


>sp|Q76E23|IF4G1_ARATH Eukaryotic translation initiation factor 4G
           OS=Arabidopsis thaliana GN=EIF4G PE=2 SV=1
          Length = 1725

 Score = 29.6 bits (65), Expect = 5.3
 Identities = 15/38 (39%), Positives = 22/38 (57%)
 Frame = +2

Query: 176 IKVLHIPGPRRTLPWRWPITQYMQPALCTPHSLTSIPH 289
           I+V HI  P +T   + PIT    P++ TP+  T +PH
Sbjct: 235 IQVPHIAPPSQTQ--KSPITNIRMPSVQTPYQHTQVPH 270


>sp|Q97RQ6|Y742_STRPN UPF0230 protein SP_0742 OS=Streptococcus
           pneumoniae GN=SP_0742 PE=3 SV=1
          Length = 281

 Score = 29.3 bits (64), Expect = 7.0
 Identities = 10/23 (43%), Positives = 18/23 (78%)
 Frame = +1

Query: 151 SEKCCYRLNQSVTYTWPKADITL 219
           +EKCC +L++ +  T+P+ADI +
Sbjct: 236 NEKCCQQLSERIRETFPQADIKI 258


>sp|Q8DQI6|Y652_STRR6 UPF0230 protein spr0652 OS=Streptococcus
           pneumoniae (strain ATCC BAA-255 / R6) GN=spr0652 PE=3
           SV=1
          Length = 281

 Score = 29.3 bits (64), Expect = 7.0
 Identities = 10/23 (43%), Positives = 18/23 (78%)
 Frame = +1

Query: 151 SEKCCYRLNQSVTYTWPKADITL 219
           +EKCC +L++ +  T+P+ADI +
Sbjct: 236 NEKCCQQLSERIRETFPQADIKI 258


>sp|Q5GSS3|SYI_WOLTR Isoleucyl-tRNA synthetase OS=Wolbachia sp.
           subsp. Brugia malayi (strain TRS) GN=ileS PE=3 SV=1
          Length = 1134

 Score = 28.9 bits (63), Expect = 9.1
 Identities = 14/50 (28%), Positives = 27/50 (54%), Gaps = 1/50 (2%)
 Frame = +3

Query: 48  VKGMHYEELLA-PSFRSKEHRLIGYWRAGDIYKLFIREVLLQIKSKCYIY 194
           +K  HY + ++ P F S E  +I +W+     K+F + V  + K  C+++
Sbjct: 1   MKPKHYPDTISSPDFSSLEKEIIKFWQEN---KIFEQSVEKRSKDNCFVF 47


>sp|Q0IDE3|SFSA_SYNS3 Sugar fermentation stimulation protein homolog
           OS=Synechococcus sp. (strain CC9311) GN=sfsA PE=3 SV=1
          Length = 250

 Score = 28.9 bits (63), Expect = 9.1
 Identities = 13/43 (30%), Positives = 21/43 (48%), Gaps = 2/43 (4%)
 Frame = +2

Query: 176 IKVLHIPGPRRTLPWRWPITQY--MQPALCTPHSLTSIPHHLL 298
           ++V H P P+R L W W   +       LC     T++P+ L+
Sbjct: 56  VRVRHAPSPKRKLAWTWEQAEIPSSDGTLCWAGINTALPNKLI 98


>sp|P20871|ENV_HV1JR Envelope glycoprotein gp160 OS=Human
           immunodeficiency virus type 1 (isolate JRCSF group M
           subtype B) GN=env PE=1 SV=1
          Length = 848

 Score = 28.9 bits (63), Expect = 9.1
 Identities = 11/34 (32%), Positives = 20/34 (58%)
 Frame = -1

Query: 149 KQFINVTGSPIAN*SVLFTPETGGEKLLIMHAFN 48
           KQ +        N +++FT  +GG+  ++MH+FN
Sbjct: 340 KQIVEKLREQFNNKTIVFTHSSGGDPEIVMHSFN 373


>sp|Q54J08|ACAC_DICDI Acetyl-CoA carboxylase OS=Dictyostelium
            discoideum GN=accA PE=3 SV=1
          Length = 2282

 Score = 28.9 bits (63), Expect = 9.1
 Identities = 12/27 (44%), Positives = 17/27 (62%)
 Frame = -1

Query: 98   FTPETGGEKLLIMHAFNSEHEDILFTP 18
            F P++GGE + I+   +S H DI F P
Sbjct: 1838 FVPKSGGEMVPIISPIDSPHRDIEFDP 1864
tr_hit_id B1NC76
Definition tr|B1NC76|B1NC76_9HIV1 Envelope glycoprotein OS=Human immunodeficiency virus 1
Align length 38
Score (bit) 32.3
E-value 3.2
Report 
BLASTX 2.2.19 [Nov-02-2008]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= BP918463|Adiantum capillus-veneris mRNA, clone:
YMU001_000113_G07.
         (428 letters)

Database: uniprot_trembl.fasta 
           7,341,751 sequences; 2,391,615,440 total letters

Searching..................................................done



                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

tr|B1NC76|B1NC76_9HIV1 Envelope glycoprotein OS=Human immunodefi...    32   3.2  
tr|B3UTC5|B3UTC5_9HIV1 Envelope glycoprotein OS=Human immunodefi...    34   4.2  
tr|A6XFA9|A6XFA9_9HIV1 Envelope glycoprotein (Fragment) OS=Human...    34   4.2  
tr|A9BKA3|A9BKA3_9CRYP Mcm7 OS=Cryptophyta GN=HAN_1g93 PE=3 SV=1       33   5.5  
tr|Q9YTA7|Q9YTA7_9HIV1 Envelope glycoprotein (Fragment) OS=Human...    33   7.2  
tr|Q9YJP1|Q9YJP1_9HIV1 Envelope glycoprotein (Fragment) OS=Human...    33   7.2  
tr|Q77TY2|Q77TY2_9HIV1 Envelope glycoprotein (Fragment) OS=Human...    33   7.2  
tr|Q77TX8|Q77TX8_9HIV1 Envelope glycoprotein (Fragment) OS=Human...    33   7.2  
tr|Q6J3V2|Q6J3V2_9HIV1 Envelope glycoprotein (Fragment) OS=Human...    33   7.2  
tr|Q6J3T8|Q6J3T8_9HIV1 Envelope glycoprotein (Fragment) OS=Human...    33   7.2  
tr|Q6J3T7|Q6J3T7_9HIV1 Envelope glycoprotein (Fragment) OS=Human...    33   7.2  
tr|Q6J3T6|Q6J3T6_9HIV1 Envelope glycoprotein (Fragment) OS=Human...    33   7.2  
tr|B1NC86|B1NC86_9HIV1 Envelope glycoprotein OS=Human immunodefi...    33   7.2  
tr|Q9YRX8|Q9YRX8_9HIV1 Envelope glycoprotein (Fragment) OS=Human...    33   9.4  
tr|Q9YRX7|Q9YRX7_9HIV1 Envelope glycoprotein (Fragment) OS=Human...    33   9.4  
tr|Q9YRX5|Q9YRX5_9HIV1 Envelope glycoprotein (Fragment) OS=Human...    33   9.4  
tr|Q9YRX4|Q9YRX4_9HIV1 Envelope glycoprotein (Fragment) OS=Human...    33   9.4  
tr|Q9YIY7|Q9YIY7_9HIV1 Envelope glycoprotein (Fragment) OS=Human...    33   9.4  
tr|Q9YIJ9|Q9YIJ9_9HIV1 Envelope glycoprotein (Fragment) OS=Human...    33   9.4  
tr|Q77U02|Q77U02_9HIV1 Envelope glycoprotein (Fragment) OS=Human...    33   9.4  
tr|Q77U01|Q77U01_9HIV1 Envelope glycoprotein (Fragment) OS=Human...    33   9.4  
tr|Q77U00|Q77U00_9HIV1 Envelope glycoprotein (Fragment) OS=Human...    33   9.4  
tr|Q77TZ9|Q77TZ9_9HIV1 Envelope glycoprotein (Fragment) OS=Human...    33   9.4  
tr|Q77TZ8|Q77TZ8_9HIV1 Envelope glycoprotein (Fragment) OS=Human...    33   9.4  
tr|Q77TZ7|Q77TZ7_9HIV1 Envelope glycoprotein (Fragment) OS=Human...    33   9.4  
tr|Q77TZ6|Q77TZ6_9HIV1 Envelope glycoprotein (Fragment) OS=Human...    33   9.4  
tr|Q77TZ5|Q77TZ5_9HIV1 Envelope glycoprotein (Fragment) OS=Human...    33   9.4  
tr|Q77TZ4|Q77TZ4_9HIV1 Envelope glycoprotein (Fragment) OS=Human...    33   9.4  
tr|Q77TZ3|Q77TZ3_9HIV1 Envelope glycoprotein (Fragment) OS=Human...    33   9.4  
tr|Q77TZ2|Q77TZ2_9HIV1 Envelope glycoprotein (Fragment) OS=Human...    33   9.4  

>tr|B1NC76|B1NC76_9HIV1 Envelope glycoprotein OS=Human
           immunodeficiency virus 1 GN=env PE=4 SV=1
          Length = 862

 Score = 32.3 bits (72), Expect(2) = 3.2
 Identities = 13/38 (34%), Positives = 21/38 (55%)
 Frame = -1

Query: 149 KQFINVTGSPIAN*SVLFTPETGGEKLLIMHAFNSEHE 36
           KQ +   G    N +++F P +GG+  ++MH FN   E
Sbjct: 349 KQVVKKLGEQFRNKTIVFKPSSGGDLEVVMHIFNCRGE 386



 Score = 20.8 bits (42), Expect(2) = 3.2
 Identities = 6/20 (30%), Positives = 11/20 (55%)
 Frame = -3

Query: 264 GVHNAGCIYWVIGHLQGNVR 205
           G+H     +W  G + G++R
Sbjct: 314 GIHIGPGSFWTTGEITGDIR 333


>tr|B3UTC5|B3UTC5_9HIV1 Envelope glycoprotein OS=Human
           immunodeficiency virus 1 GN=env PE=4 SV=1
          Length = 856

 Score = 33.9 bits (76), Expect = 4.2
 Identities = 13/38 (34%), Positives = 23/38 (60%)
 Frame = -1

Query: 149 KQFINVTGSPIAN*SVLFTPETGGEKLLIMHAFNSEHE 36
           KQ +      I+N +++F P +GG+  ++MH+FN   E
Sbjct: 348 KQIVEKLREQISNKTIIFKPSSGGDPEIVMHSFNCRGE 385


>tr|A6XFA9|A6XFA9_9HIV1 Envelope glycoprotein (Fragment) OS=Human
           immunodeficiency virus 1 GN=env PE=4 SV=1
          Length = 134

 Score = 33.9 bits (76), Expect = 4.2
 Identities = 13/38 (34%), Positives = 22/38 (57%)
 Frame = -1

Query: 149 KQFINVTGSPIAN*SVLFTPETGGEKLLIMHAFNSEHE 36
           KQ +   G    N +++F P +GG+  ++MH+FN   E
Sbjct: 58  KQVVGKLGEQFKNKTIVFKPHSGGDPEIVMHSFNCRGE 95


>tr|A9BKA3|A9BKA3_9CRYP Mcm7 OS=Cryptophyta GN=HAN_1g93 PE=3 SV=1
          Length = 714

 Score = 33.5 bits (75), Expect = 5.5
 Identities = 18/55 (32%), Positives = 27/55 (49%)
 Frame = +1

Query: 136 FINCLSEKCCYRLNQSVTYTWPKADITLEVAYHPIYAASIVYSTFSNQHSSPPFV 300
           FI+ LS + CY    S  + +P  +  +E     ++    +YSTFS   S  PFV
Sbjct: 283 FIDSLSMEACYIKRNSFPFLYPNRNFKIEKEIMELFTKKNIYSTFS--ESFAPFV 335


>tr|Q9YTA7|Q9YTA7_9HIV1 Envelope glycoprotein (Fragment) OS=Human
           immunodeficiency virus 1 GN=env PE=4 SV=1
          Length = 108

 Score = 33.1 bits (74), Expect = 7.2
 Identities = 12/34 (35%), Positives = 21/34 (61%)
 Frame = -1

Query: 149 KQFINVTGSPIAN*SVLFTPETGGEKLLIMHAFN 48
           KQ +N  G    N +++F   +GG+  ++MH+FN
Sbjct: 73  KQIVNKLGEQFKNKTIVFKQSSGGDSEIVMHSFN 106


>tr|Q9YJP1|Q9YJP1_9HIV1 Envelope glycoprotein (Fragment) OS=Human
           immunodeficiency virus 1 GN=env PE=4 SV=1
          Length = 213

 Score = 33.1 bits (74), Expect = 7.2
 Identities = 17/60 (28%), Positives = 32/60 (53%)
 Frame = -1

Query: 227 ATSRVMSALGQVYVTL*FNL*QHFSDKQFINVTGSPIAN*SVLFTPETGGEKLLIMHAFN 48
           AT R++  + Q + TL F    +  +K    +      N +++FT  +GG+  ++MH+FN
Sbjct: 68  ATGRIIGDIRQAHCTLNFTKWNNTLNKIVTKLREQLGKNKTIVFTQSSGGDPEIVMHSFN 127


>tr|Q77TY2|Q77TY2_9HIV1 Envelope glycoprotein (Fragment) OS=Human
           immunodeficiency virus 1 GN=env PE=4 SV=1
          Length = 213

 Score = 33.1 bits (74), Expect = 7.2
 Identities = 17/60 (28%), Positives = 32/60 (53%)
 Frame = -1

Query: 227 ATSRVMSALGQVYVTL*FNL*QHFSDKQFINVTGSPIAN*SVLFTPETGGEKLLIMHAFN 48
           AT R++  + Q + TL F    +  +K    +      N +++FT  +GG+  ++MH+FN
Sbjct: 68  ATGRIIGDIRQAHCTLNFTKWNNTLNKIVTKLREQLGKNKTIVFTQSSGGDPEIVMHSFN 127


>tr|Q77TX8|Q77TX8_9HIV1 Envelope glycoprotein (Fragment) OS=Human
           immunodeficiency virus 1 GN=env PE=4 SV=1
          Length = 213

 Score = 33.1 bits (74), Expect = 7.2
 Identities = 17/60 (28%), Positives = 32/60 (53%)
 Frame = -1

Query: 227 ATSRVMSALGQVYVTL*FNL*QHFSDKQFINVTGSPIAN*SVLFTPETGGEKLLIMHAFN 48
           AT R++  + Q + TL F    +  +K    +      N +++FT  +GG+  ++MH+FN
Sbjct: 68  ATGRIIGDIRQAHCTLNFTKWNNTLNKIVTKLREQLGKNKTIVFTQSSGGDPEIVMHSFN 127


>tr|Q6J3V2|Q6J3V2_9HIV1 Envelope glycoprotein (Fragment) OS=Human
           immunodeficiency virus 1 GN=env PE=4 SV=1
          Length = 171

 Score = 33.1 bits (74), Expect = 7.2
 Identities = 20/66 (30%), Positives = 36/66 (54%), Gaps = 2/66 (3%)
 Frame = -1

Query: 227 ATSRVMSALGQVYVTL*FNL*QHFSD--KQFINVTGSPIAN*SVLFTPETGGEKLLIMHA 54
           AT R++  + + Y TL  NL   ++D  KQ +        N +++F   +GG+  ++MH+
Sbjct: 22  ATKRIIGDIRKAYCTL--NL-TKWNDTLKQVVKKLREQFVNKTIVFNQSSGGDPEIVMHS 78

Query: 53  FNSEHE 36
           FN + E
Sbjct: 79  FNCQGE 84


>tr|Q6J3T8|Q6J3T8_9HIV1 Envelope glycoprotein (Fragment) OS=Human
           immunodeficiency virus 1 GN=env PE=4 SV=1
          Length = 171

 Score = 33.1 bits (74), Expect = 7.2
 Identities = 20/66 (30%), Positives = 36/66 (54%), Gaps = 2/66 (3%)
 Frame = -1

Query: 227 ATSRVMSALGQVYVTL*FNL*QHFSD--KQFINVTGSPIAN*SVLFTPETGGEKLLIMHA 54
           AT R++  + + Y TL  NL   ++D  KQ +        N +++F   +GG+  ++MH+
Sbjct: 22  ATKRIIGDIRKAYCTL--NL-TKWNDTLKQVVKKLREQFVNKTIVFNQSSGGDPEIVMHS 78

Query: 53  FNSEHE 36
           FN + E
Sbjct: 79  FNCQGE 84