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AcEST | BlastX Result : Swiss-Prot | BlastX Result : TrEMBL | AcESTcontig | About Libraries
NBDC - LSDB Archive
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AcEST | BlastX Result : Swiss-Prot | BlastX Result : TrEMBL | AcESTcontig | About Libraries
BP918472
Clone id YMU001_000113_H04
Library
Length 585
Definition Adiantum capillus-veneris mRNA. clone: YMU001_000113_H04.
Accession
Tissue type prothallium
Developmental stage -
Contig ID
Sequence 
CACAGAGGCTCTTCACTGTAGTACTGTAAAATCACATCTCATTCATCCTCATCTTCATCC
AGGTGACGGACAGGAGCACTTTTCACTTCTACATGCCTTCCCTCCTTGTTGCTTGAAAGG
TCTTGAGATTTAAAAGGCCCATGAGCTGGCCCATATGCAACCAACTCTTGATATCTGACA
GACTCTCCATCACCCTCACTACTCCCTCCTAAAAGGCTATCTCTCACCTCACTGCCGATA
TCTGCAGCATCACTACTTACTAGGAGTCCTGACCTCACAGACCCATGATTGTCATCATCA
GCCACATCTGCTCGGCGATCATCAGGTCGGTAGGCACTCGACCTTAAATCAATTTGTTCT
AACTGATCTGCTTGATACATAAAGCCTTTCCAAACTGGCTGAGAAGCCATTAAATTAATT
TCCTCAGAATCGTATAGTTGGCCATCATAATCATTGCCTGCATTGTTACCTCTTGACGAG
TTTAAAACATCGTCAACATTGCTTGTCAAATATATAGTTGAATAAGCAGCTTTAGATCGA
TCCATCTGCTCTTTTGACTCAGACATCTGCAATCTGTGAGCTTCT
■■Homology search results ■■ -
sp_hit_id Q54QR1
Definition sp|Q54QR1|LIMA_DICDI LIM domain-containing protein A OS=Dictyostelium discoideum
Align length 102
Score (bit) 34.7
E-value 0.36
Report 
BLASTX 2.2.19 [Nov-02-2008]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= BP918472|Adiantum capillus-veneris mRNA, clone:
YMU001_000113_H04.
         (585 letters)

Database: uniprot_sprot.fasta 
           412,525 sequences; 148,809,765 total letters

Searching..................................................done



                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

sp|Q54QR1|LIMA_DICDI LIM domain-containing protein A OS=Dictyost...    35   0.36 
sp|Q7TN75|PEG10_MOUSE Retrotransposon-derived protein PEG10 OS=M...    31   5.2  
sp|Q7Z417|NUFP2_HUMAN Nuclear fragile X mental retardation-inter...    30   8.8  

>sp|Q54QR1|LIMA_DICDI LIM domain-containing protein A
           OS=Dictyostelium discoideum GN=limA PE=2 SV=1
          Length = 1183

 Score = 34.7 bits (78), Expect = 0.36
 Identities = 29/102 (28%), Positives = 34/102 (33%)
 Frame = +2

Query: 32  SHLIHPHLHPGDGQEHFSLLHAFPPCCLKGLEI*KAHELAHMQPTLDI*QTLHHPHYSLL 211
           SH  HPH HP     H    H              +H  AH QPT  +       H   L
Sbjct: 714 SHPQHPHSHPQHPHSHPHQSH--------------SHSHAHSQPTTTVQPQQQQQH--SL 757

Query: 212 KGYLSPHCRYLQHHYLLGVLTSQTHDCHHQPHLLGDHQVGRH 337
              + PH     HH+      SQ H   H  H    HQ  +H
Sbjct: 758 STVVHPHNATPSHHHHHQHSHSQPHSFDHNQH---QHQPLQH 796


>sp|Q7TN75|PEG10_MOUSE Retrotransposon-derived protein PEG10 OS=Mus
           musculus GN=Peg10 PE=1 SV=2
          Length = 958

 Score = 30.8 bits (68), Expect = 5.2
 Identities = 29/98 (29%), Positives = 38/98 (38%), Gaps = 7/98 (7%)
 Frame = +2

Query: 35  HLIHPHLHPGDGQEHFSLLHAF----PPCCLKGLEI*KAHELAHMQPTLD--I*QTLHHP 196
           H +HPH+HP   Q     LH F    P            H+ A MQ  L   + Q L++ 
Sbjct: 550 HHVHPHVHPHMHQHLHQHLHQFLHPDPHQYPHPDPHYHHHQQADMQHQLQQYLYQYLYYH 609

Query: 197 HYSLLKGYLSPHCRYLQHHYLLGVLTSQTHD-CHHQPH 307
            Y ++  +L P      H YL   L    H   HH  H
Sbjct: 610 LYPVMHHHLPPDQHEHLHEYLHQYLHQYLHQFLHHHLH 647


>sp|Q7Z417|NUFP2_HUMAN Nuclear fragile X mental
           retardation-interacting protein 2 OS=Homo sapiens
           GN=NUFIP2 PE=1 SV=1
          Length = 695

 Score = 30.0 bits (66), Expect = 8.8
 Identities = 16/50 (32%), Positives = 22/50 (44%)
 Frame = +2

Query: 188 HHPHYSLLKGYLSPHCRYLQHHYLLGVLTSQTHDCHHQPHLLGDHQVGRH 337
           HHPH+   +    PH     HHY      + +H+ HH  H    HQ  +H
Sbjct: 17  HHPHHHPQQQQQQPHHH---HHYYF---YNHSHNHHHHHHHQQPHQYLQH 60
tr_hit_id A7P2Q8
Definition tr|A7P2Q8|A7P2Q8_VITVI Chromosome chr1 scaffold_5, whole genome shotgun sequence OS=Vitis vinifera
Align length 98
Score (bit) 65.5
E-value 2.0e-09
Report 
BLASTX 2.2.19 [Nov-02-2008]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= BP918472|Adiantum capillus-veneris mRNA, clone:
YMU001_000113_H04.
         (585 letters)

Database: uniprot_trembl.fasta 
           7,341,751 sequences; 2,391,615,440 total letters

Searching..................................................done



                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

tr|A7P2Q8|A7P2Q8_VITVI Chromosome chr1 scaffold_5, whole genome ...    65   2e-09
tr|A5C2E8|A5C2E8_VITVI Putative uncharacterized protein OS=Vitis...    65   2e-09
tr|Q6ASW0|Q6ASW0_ORYSJ Putative uncharacterized protein B1377B10...    64   6e-09
tr|Q0DP29|Q0DP29_ORYSJ Os03g0719500 protein (Fragment) OS=Oryza ...    64   6e-09
tr|B8AQP8|B8AQP8_ORYSI Putative uncharacterized protein OS=Oryza...    64   6e-09
tr|A3AM54|A3AM54_ORYSJ Putative uncharacterized protein OS=Oryza...    64   6e-09
tr|Q9FX38|Q9FX38_ARATH Protein kinase, putative OS=Arabidopsis t...    57   1e-06
tr|Q9FX39|Q9FX39_ARATH Putative uncharacterized protein T9L24.35...    55   3e-06
tr|A5C7I3|A5C7I3_VITVI Putative uncharacterized protein OS=Vitis...    54   6e-06
tr|A5BSI5|A5BSI5_VITVI Putative uncharacterized protein OS=Vitis...    50   9e-05
tr|A5BQI2|A5BQI2_VITVI Putative uncharacterized protein OS=Vitis...    49   2e-04
tr|A5BDD9|A5BDD9_VITVI Putative uncharacterized protein OS=Vitis...    45   0.003
tr|Q9LSH3|Q9LSH3_ARATH Ser-Thr protein kinase-like protein OS=Ar...    42   0.025
tr|Q8RX85|Q8RX85_ARATH AT3g17750/MIG5_4 OS=Arabidopsis thaliana ...    42   0.025
tr|A7RG16|A7RG16_NEMVE Predicted protein (Fragment) OS=Nematoste...    35   2.4  
tr|B4N2C4|B4N2C4_DROWI GK16144 OS=Drosophila willistoni GN=GK161...    35   4.0  
tr|A5AVJ7|A5AVJ7_VITVI Putative uncharacterized protein OS=Vitis...    34   6.9  
tr|B4NPJ4|B4NPJ4_DROWI GK18088 OS=Drosophila willistoni GN=GK180...    34   6.9  
tr|A8XY13|A8XY13_CAEBR Putative uncharacterized protein OS=Caeno...    34   6.9  
tr|Q29BI2|Q29BI2_DROPS GA19667 OS=Drosophila pseudoobscura pseud...    33   9.0  
tr|Q17FL1|Q17FL1_AEDAE Putative uncharacterized protein OS=Aedes...    33   9.0  
tr|B4GNZ3|B4GNZ3_DROPE GL13783 OS=Drosophila persimilis GN=GL137...    33   9.0  

>tr|A7P2Q8|A7P2Q8_VITVI Chromosome chr1 scaffold_5, whole genome
           shotgun sequence OS=Vitis vinifera GN=GSVIVT00030148001
           PE=4 SV=1
          Length = 804

 Score = 65.5 bits (158), Expect = 2e-09
 Identities = 42/98 (42%), Positives = 58/98 (59%), Gaps = 5/98 (5%)
 Frame = -2

Query: 500 NVDDVLNSSRGNNAGNDYDGQLYDSEEINLMASQPVWKGFMYQADQLEQIDLRS----SX 333
           +V ++   +  N+    YDGQL D EE+NLM ++PVW+GF+ Q ++L  I LR     + 
Sbjct: 509 SVTEMYGRTEENDLIAQYDGQLMDEEELNLMRAEPVWQGFVTQTNEL--IMLRDGKVMND 566

Query: 332 XXXXXXXXXXXXXDNHGSVRS-GLLVSSDAADIGSEVR 222
                        D HGSVRS G+ ++SDAADIGSEVR
Sbjct: 567 CGRPRLDDNCMDDDQHGSVRSIGVGINSDAADIGSEVR 604


>tr|A5C2E8|A5C2E8_VITVI Putative uncharacterized protein OS=Vitis
            vinifera GN=VITISV_029434 PE=4 SV=1
          Length = 1697

 Score = 65.5 bits (158), Expect = 2e-09
 Identities = 42/98 (42%), Positives = 58/98 (59%), Gaps = 5/98 (5%)
 Frame = -2

Query: 500  NVDDVLNSSRGNNAGNDYDGQLYDSEEINLMASQPVWKGFMYQADQLEQIDLRS----SX 333
            +V ++   +  N+    YDGQL D EE+NLM ++PVW+GF+ Q ++L  I LR     + 
Sbjct: 1370 SVTEMYGRTEENDLIAQYDGQLMDEEELNLMRAEPVWQGFVTQTNEL--IMLRDGKVMND 1427

Query: 332  XXXXXXXXXXXXXDNHGSVRS-GLLVSSDAADIGSEVR 222
                         D HGSVRS G+ ++SDAADIGSEVR
Sbjct: 1428 CGRPRLDDNCMDDDQHGSVRSIGVGINSDAADIGSEVR 1465


>tr|Q6ASW0|Q6ASW0_ORYSJ Putative uncharacterized protein B1377B10.7
           (Protein kinase, putative, expressed) OS=Oryza sativa
           subsp. japonica GN=B1377B10.7 PE=4 SV=1
          Length = 1115

 Score = 63.9 bits (154), Expect = 6e-09
 Identities = 39/79 (49%), Positives = 48/79 (60%), Gaps = 3/79 (3%)
 Frame = -2

Query: 449 YDGQLYDSEEINLMASQPVWKGFMYQADQLEQIDLRS--SXXXXXXXXXXXXXXDNHGSV 276
           YDGQL D EE+NLM S+PVW+GF+ Q  +L  +      +              D HGSV
Sbjct: 492 YDGQLLDPEELNLMHSEPVWQGFVSQNSELGMLGNGKFLNDSERPHPDDPFVEDDQHGSV 551

Query: 275 RS-GLLVSSDAADIGSEVR 222
           RS G+ +SSDAADIGSEVR
Sbjct: 552 RSIGVGISSDAADIGSEVR 570


>tr|Q0DP29|Q0DP29_ORYSJ Os03g0719500 protein (Fragment) OS=Oryza
           sativa subsp. japonica GN=Os03g0719500 PE=4 SV=1
          Length = 672

 Score = 63.9 bits (154), Expect = 6e-09
 Identities = 39/79 (49%), Positives = 48/79 (60%), Gaps = 3/79 (3%)
 Frame = -2

Query: 449 YDGQLYDSEEINLMASQPVWKGFMYQADQLEQIDLRS--SXXXXXXXXXXXXXXDNHGSV 276
           YDGQL D EE+NLM S+PVW+GF+ Q  +L  +      +              D HGSV
Sbjct: 49  YDGQLLDPEELNLMHSEPVWQGFVSQNSELGMLGNGKFLNDSERPHPDDPFVEDDQHGSV 108

Query: 275 RS-GLLVSSDAADIGSEVR 222
           RS G+ +SSDAADIGSEVR
Sbjct: 109 RSIGVGISSDAADIGSEVR 127


>tr|B8AQP8|B8AQP8_ORYSI Putative uncharacterized protein OS=Oryza
           sativa subsp. indica GN=OsI_13314 PE=4 SV=1
          Length = 808

 Score = 63.9 bits (154), Expect = 6e-09
 Identities = 39/79 (49%), Positives = 48/79 (60%), Gaps = 3/79 (3%)
 Frame = -2

Query: 449 YDGQLYDSEEINLMASQPVWKGFMYQADQLEQIDLRS--SXXXXXXXXXXXXXXDNHGSV 276
           YDGQL D EE+NLM S+PVW+GF+ Q  +L  +      +              D HGSV
Sbjct: 185 YDGQLLDPEELNLMHSEPVWQGFVSQNSELGMLGNGKFLNDSERPHPDDPFVEDDQHGSV 244

Query: 275 RS-GLLVSSDAADIGSEVR 222
           RS G+ +SSDAADIGSEVR
Sbjct: 245 RSIGVGISSDAADIGSEVR 263


>tr|A3AM54|A3AM54_ORYSJ Putative uncharacterized protein OS=Oryza
           sativa subsp. japonica GN=OsJ_011876 PE=4 SV=1
          Length = 1153

 Score = 63.9 bits (154), Expect = 6e-09
 Identities = 39/79 (49%), Positives = 48/79 (60%), Gaps = 3/79 (3%)
 Frame = -2

Query: 449 YDGQLYDSEEINLMASQPVWKGFMYQADQLEQIDLRS--SXXXXXXXXXXXXXXDNHGSV 276
           YDGQL D EE+NLM S+PVW+GF+ Q  +L  +      +              D HGSV
Sbjct: 492 YDGQLLDPEELNLMHSEPVWQGFVSQNSELGMLGNGKFLNDSERPHPDDPFVEDDQHGSV 551

Query: 275 RS-GLLVSSDAADIGSEVR 222
           RS G+ +SSDAADIGSEVR
Sbjct: 552 RSIGVGISSDAADIGSEVR 570


>tr|Q9FX38|Q9FX38_ARATH Protein kinase, putative OS=Arabidopsis
           thaliana GN=T9L24.36 PE=4 SV=1
          Length = 1155

 Score = 56.6 bits (135), Expect = 1e-06
 Identities = 34/95 (35%), Positives = 54/95 (56%), Gaps = 3/95 (3%)
 Frame = -2

Query: 497 VDDVLNSSRGNNAGNDYDGQLYDSEEINLMASQPVWKGFMYQADQLEQIDLRS--SXXXX 324
           V ++  + + N+    YDGQL D + +N M ++PVW+GF+ Q+++L  +  +   +    
Sbjct: 503 VSEIYPACKKNDLLAQYDGQLMDEDLLNSMRTEPVWQGFVAQSNELVMLGDKKGINVHRK 562

Query: 323 XXXXXXXXXXDNHGSVRS-GLLVSSDAADIGSEVR 222
                     D H SVRS G+ ++SDAAD GSEVR
Sbjct: 563 SHLDDVYVEDDQHDSVRSIGVGINSDAADFGSEVR 597


>tr|Q9FX39|Q9FX39_ARATH Putative uncharacterized protein T9L24.35
           OS=Arabidopsis thaliana GN=T9L24.35 PE=4 SV=1
          Length = 1157

 Score = 55.1 bits (131), Expect = 3e-06
 Identities = 34/95 (35%), Positives = 53/95 (55%), Gaps = 3/95 (3%)
 Frame = -2

Query: 497 VDDVLNSSRGNNAGNDYDGQLYDSEEINLMASQPVWKGFMYQADQLEQIDLRS--SXXXX 324
           V ++  +S+ N+    YDG L D E ++ M  +PVW+GF+ Q+++L  +  +   +    
Sbjct: 508 VSEIYPASKKNDLLAQYDGHLMDEELLSSMRDEPVWQGFVAQSNELLMLGDKKGINVHRK 567

Query: 323 XXXXXXXXXXDNHGSVRS-GLLVSSDAADIGSEVR 222
                     D H SVRS G+ ++SDAAD GSEVR
Sbjct: 568 SHRDDVYVEDDQHDSVRSIGVGINSDAADFGSEVR 602


>tr|A5C7I3|A5C7I3_VITVI Putative uncharacterized protein OS=Vitis
           vinifera GN=VITISV_043082 PE=4 SV=1
          Length = 171

 Score = 53.9 bits (128), Expect = 6e-06
 Identities = 35/96 (36%), Positives = 54/96 (56%), Gaps = 3/96 (3%)
 Frame = -2

Query: 500 NVDDVLNSSRGNNAGNDYDGQLYDSEEINLMASQPVWKGFMYQADQLEQI--DLRSSXXX 327
           +V ++   +  N+    YDGQL D EE+NL  ++ VW+GF+ Q ++L  +      +   
Sbjct: 57  SVTEMYGRTEENDLIARYDGQLMDEEELNLRRAEFVWQGFVTQTNELIMLKDGKVMNNCE 116

Query: 326 XXXXXXXXXXXDNHGSVRS-GLLVSSDAADIGSEVR 222
                      D +GSVRS G+ ++SDAADIG+EVR
Sbjct: 117 RPRLDDNCMDEDQYGSVRSIGIGINSDAADIGNEVR 152


>tr|A5BSI5|A5BSI5_VITVI Putative uncharacterized protein OS=Vitis
           vinifera GN=VITISV_019006 PE=4 SV=1
          Length = 1367

 Score = 50.1 bits (118), Expect = 9e-05
 Identities = 34/89 (38%), Positives = 49/89 (55%), Gaps = 3/89 (3%)
 Frame = -2

Query: 485 LNSSRGNNAGNDYDGQLYDSEEINLMASQPVWKGFMYQADQLEQI--DLRSSXXXXXXXX 312
           LN S  N+    YDGQL D EE+NL  ++ VW+GF+ Q ++L  +      +        
Sbjct: 131 LNMSEENDLIARYDGQLMDEEELNLRRAEFVWQGFVTQINELIMLKDGKVMNDCERPRLD 190

Query: 311 XXXXXXDNHGSVRS-GLLVSSDAADIGSE 228
                 D +GSVRS G+ ++SDAAD GS+
Sbjct: 191 DNCMDDDQYGSVRSIGIGINSDAADSGSK 219