NBDC - アーカイブトップ - ヘルプ
データベースの説明 | データ項目の説明 | ダウンロード | 利用許諾 | ヘルプ
AcEST | BlastX Result : Swiss-Prot | BlastX Result : TrEMBL | AcESTcontig | About Libraries
NBDC - LSDB Archive
Description of this DB | Description of data items | Download | License
AcEST | BlastX Result : Swiss-Prot | BlastX Result : TrEMBL | AcESTcontig | About Libraries
BP918473
Clone id YMU001_000113_H05
Library
Length 537
Definition Adiantum capillus-veneris mRNA. clone: YMU001_000113_H05.
Accession
Tissue type prothallium
Developmental stage -
Contig ID
Sequence 
CAAGTCTGCAGATGTAGAGCGCATTATGCATGAGCATGACAGCCATATGCAGAAGGCGTT
TCGCAGGGCACGGCATGGAAGGGATAAGAAAGGGGAGTTGCAGGCATTTGGGGACAAAGG
GGCAAATGAAGGCATGCGAGATGGTGGTTATAAGGACAGGTATGAGACATCAATGGCTAA
CGATGGTCACTCCAAATATCGGCCTCGCATGCTTGGAGAAACCAGTAAAATGAAGAAGGA
TGCGGAAGTTATGCCTGAGATGTATGATTATCATCACGAGTTGCAGTACTTGTAACATAA
AGGTGATTATCGATGCCACTGCTAGGGAGGAGCAGGGTTGCTGGGCTGCGGGGCAAGCCG
CTTTGCCATGAGAACGGCGCGCTTCATATATCCGTAGGAGTAAAAGAAGCATTGGTATGA
GATAGGGGAAGTAATTGTGTGAGGTATATACTTGTGTTCATGGCAAGAAAGCCATTAATG
TAACCACGAATTATTTGCAGGATGATGAGAAGTCCTGCTTGTCACATTGCTTATCAT
■■Homology search results ■■ -
sp_hit_id P46950
Definition sp|P46950|SNG1_YEAST Nitrosoguanidine resistance protein SNG1 OS=Saccharomyces cerevisiae
Align length 65
Score (bit) 31.2
E-value 3.3
Report 
BLASTX 2.2.19 [Nov-02-2008]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= BP918473|Adiantum capillus-veneris mRNA, clone:
YMU001_000113_H05.
         (537 letters)

Database: uniprot_sprot.fasta 
           412,525 sequences; 148,809,765 total letters

Searching..................................................done



                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

sp|P46950|SNG1_YEAST Nitrosoguanidine resistance protein SNG1 OS...    31   3.3  
sp|Q25637|PER_PERAM Period circadian protein OS=Periplaneta amer...    31   3.3  
sp|Q9HDY9|MAM3_SCHPO M cell-type agglutination protein mam3 OS=S...    31   4.3  
sp|P20930|FILA_HUMAN Filaggrin OS=Homo sapiens GN=FLG PE=1 SV=3        31   4.3  
sp|Q0B004|TRPF_SYNWW N-(5'-phosphoribosyl)anthranilate isomerase...    30   5.7  
sp|Q9UJY4|GGA2_HUMAN ADP-ribosylation factor-binding protein GGA...    26   6.7  
sp|Q5QQ56|XYLT1_CANFA Xylosyltransferase 1 OS=Canis familiaris G...    30   9.7  
sp|P05046|LEC_SOYBN Lectin OS=Glycine max GN=LE1 PE=1 SV=1             30   9.7  
sp|Q1EHW4|SAP25_MOUSE Histone deacetylase complex subunit SAP25 ...    30   9.8  

>sp|P46950|SNG1_YEAST Nitrosoguanidine resistance protein SNG1
           OS=Saccharomyces cerevisiae GN=SNG1 PE=1 SV=1
          Length = 547

 Score = 31.2 bits (69), Expect = 3.3
 Identities = 19/65 (29%), Positives = 31/65 (47%), Gaps = 3/65 (4%)
 Frame = +2

Query: 35  HDSHMQKAFRRARHGRDKKGELQAFGDKGANE---GMRDGGYKDRYETSMANDGHSKYRP 205
           H S + K+    R   +K   L + G+ GANE   G  DGG   R +T + +     +R 
Sbjct: 44  HSSDLAKSLEDYRPPDEKPSSLSSVGEGGANEEEKGGNDGGPLARIQTGLFSPRLRNHRK 103

Query: 206 RMLGE 220
           ++L +
Sbjct: 104 KILSK 108


>sp|Q25637|PER_PERAM Period circadian protein OS=Periplaneta
           americana GN=per PE=2 SV=2
          Length = 893

 Score = 31.2 bits (69), Expect = 3.3
 Identities = 19/81 (23%), Positives = 34/81 (41%)
 Frame = +2

Query: 38  DSHMQKAFRRARHGRDKKGELQAFGDKGANEGMRDGGYKDRYETSMANDGHSKYRPRMLG 217
           DS +  + R+     +  G     G    + G+  G  + R +TS  N  H  Y+P +L 
Sbjct: 660 DSSLGSSNRKCCSPVNGSGSGSGSGHSSGSAGI-GGSAESRRDTSATNTSHGSYKPPLLT 718

Query: 218 ETSKMKKDAEVMPEMYDYHHE 280
           E    + + ++  +M   H E
Sbjct: 719 EALLCRHNEDMEKKMVQKHRE 739


>sp|Q9HDY9|MAM3_SCHPO M cell-type agglutination protein mam3
           OS=Schizosaccharomyces pombe GN=mam3 PE=2 SV=2
          Length = 1082

 Score = 30.8 bits (68), Expect = 4.3
 Identities = 17/55 (30%), Positives = 28/55 (50%)
 Frame = -2

Query: 422 SHTNASFTPTDI*SAPFSWQSGLPRSPATLLLPSSGIDNHLYVTSTATRDDNHTS 258
           S T +S  P     A  S+ + +P +P+TL  P+S   ++L  TS+   D   T+
Sbjct: 239 STTASSTLPVSTSEATVSFSTDIPATPSTLSSPASSSSSYLVETSSTLTDSVFTT 293


>sp|P20930|FILA_HUMAN Filaggrin OS=Homo sapiens GN=FLG PE=1 SV=3
          Length = 4061

 Score = 30.8 bits (68), Expect = 4.3
 Identities = 17/53 (32%), Positives = 26/53 (49%)
 Frame = +2

Query: 41   SHMQKAFRRARHGRDKKGELQAFGDKGANEGMRDGGYKDRYETSMANDGHSKY 199
            S  ++A   +RH   + G+    G  G++ G R G Y   +E S+   GHS Y
Sbjct: 1468 SRHEQARNSSRHSASQDGQDTIRGHPGSSRGGRQGSY---HEQSVDRSGHSGY 1517


>sp|Q0B004|TRPF_SYNWW N-(5'-phosphoribosyl)anthranilate isomerase
           OS=Syntrophomonas wolfei subsp. wolfei (strain
           Goettingen) GN=trpF PE=3 SV=1
          Length = 204

 Score = 30.4 bits (67), Expect = 5.7
 Identities = 14/36 (38%), Positives = 18/36 (50%)
 Frame = +3

Query: 273 ITSCSTCNIKVIIDATAREEQGCWAAGQAALP*ERR 380
           +T    C I+ + +A A  E G WA GQ   P  RR
Sbjct: 1   MTRVKICGIRSLEEAIAAREAGAWAIGQVFAPSPRR 36


>sp|Q9UJY4|GGA2_HUMAN ADP-ribosylation factor-binding protein GGA2
           OS=Homo sapiens GN=GGA2 PE=1 SV=3
          Length = 613

 Score = 25.8 bits (55), Expect(2) = 6.7
 Identities = 19/64 (29%), Positives = 30/64 (46%), Gaps = 3/64 (4%)
 Frame = -3

Query: 358 ACPAAQQPCSS---LAVASIITFMLQVLQLVMIIIHLRHNFRILLHFTGFSKHARPIFGV 188
           A P A  P S    LA   +    ++   L  +I++ R+ FRILLHF+       P   V
Sbjct: 457 AGPLAPSPSSQNTPLAQVFVPLESVKPSSLPPLIVYDRNGFRILLHFSQTGAPGHPEVQV 516

Query: 187 TIVS 176
            +++
Sbjct: 517 LLLT 520



 Score = 22.7 bits (47), Expect(2) = 6.7
 Identities = 10/21 (47%), Positives = 14/21 (66%)
 Frame = -1

Query: 141 SRMPSFAPLSPNACNSPFLSL 79
           S++P+F+PL P A  S  L L
Sbjct: 552 SKLPAFSPLMPPAVISQMLLL 572


>sp|Q5QQ56|XYLT1_CANFA Xylosyltransferase 1 OS=Canis familiaris
           GN=XYLT1 PE=2 SV=1
          Length = 950

 Score = 29.6 bits (65), Expect = 9.7
 Identities = 17/53 (32%), Positives = 26/53 (49%)
 Frame = +2

Query: 50  QKAFRRARHGRDKKGELQAFGDKGANEGMRDGGYKDRYETSMANDGHSKYRPR 208
           QK   + R  +++KG+ Q+F  KG +E +  GG       +  N  H K  PR
Sbjct: 178 QKELLKRRLEQEEKGKGQSFPGKGTHEALPPGG------RAAVNGSHGKDAPR 224


>sp|P05046|LEC_SOYBN Lectin OS=Glycine max GN=LE1 PE=1 SV=1
          Length = 285

 Score = 29.6 bits (65), Expect = 9.7
 Identities = 26/107 (24%), Positives = 41/107 (38%)
 Frame = -2

Query: 467 LAMNTSIYLTQLLPLSHTNASFTPTDI*SAPFSWQSGLPRSPATLLLPSSGIDNHLYVTS 288
           + ++ S+ LT +L L  + A+   T      FSW   +P+ P  +L           VTS
Sbjct: 11  VVVSLSLTLTLVLVLLTSKANSAET----VSFSWNKFVPKQPNMIL------QGDAIVTS 60

Query: 287 TATRDDNHTSQA*LPHPSSFYWFLQACEADIWSDHR*PLMSHTCPYN 147
           +     N   +   P PSS    L +    IW      + S    +N
Sbjct: 61  SGKLQLNKVDENGTPKPSSLGRALYSTPIHIWDKETGSVASFAASFN 107


>sp|Q1EHW4|SAP25_MOUSE Histone deacetylase complex subunit SAP25
           OS=Mus musculus GN=Sap25 PE=1 SV=1
          Length = 186

 Score = 29.6 bits (65), Expect = 9.8
 Identities = 16/35 (45%), Positives = 19/35 (54%)
 Frame = -1

Query: 186 PSLAIDVSYLSL*PPSRMPSFAPLSPNACNSPFLS 82
           P  A+D   L L PP   PS  P S  AC+S +LS
Sbjct: 97  PQQAMDSRKLLLPPPIMSPSVHPSSSQACSSTWLS 131
tr_hit_id A4I0J2
Definition tr|A4I0J2|A4I0J2_LEIIN DNA polymerase (Fragment) OS=Leishmania infantum
Align length 60
Score (bit) 37.4
E-value 0.5
Report 
BLASTX 2.2.19 [Nov-02-2008]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= BP918473|Adiantum capillus-veneris mRNA, clone:
YMU001_000113_H05.
         (537 letters)

Database: uniprot_trembl.fasta 
           7,341,751 sequences; 2,391,615,440 total letters

Searching..................................................done



                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

tr|A4I0J2|A4I0J2_LEIIN DNA polymerase (Fragment) OS=Leishmania i...    37   0.50 
tr|A5DWQ8|A5DWQ8_LODEL Putative uncharacterized protein OS=Lodde...    36   1.4  
tr|B8NHR3|B8NHR3_ASPFL Putative uncharacterized protein OS=Asper...    35   2.5  
tr|A3Y519|A3Y519_9GAMM Putative uncharacterized protein OS=Marin...    35   3.2  
tr|O44798|O44798_CAEEL Putative uncharacterized protein OS=Caeno...    35   3.2  
tr|Q2QKB6|Q2QKB6_WHEAT U1 snRNP-interacting 70 kDa protein OS=Tr...    34   5.5  
tr|Q986C3|Q986C3_RHILO Mll7427 protein OS=Rhizobium loti GN=mll7...    33   7.2  
tr|A9TYG2|A9TYG2_PHYPA Predicted protein OS=Physcomitrella paten...    33   7.2  
tr|Q6GPV7|Q6GPV7_XENLA MGC82581 protein OS=Xenopus laevis GN=gga...    33   9.3  
tr|Q2T7Y4|Q2T7Y4_BURTA ABC transporter, permease protein/ATP-bin...    33   9.3  
tr|B6KGH0|B6KGH0_TOXGO Putative uncharacterized protein OS=Toxop...    33   9.3  

>tr|A4I0J2|A4I0J2_LEIIN DNA polymerase (Fragment) OS=Leishmania
            infantum GN=LinJ23.1550.B PE=3 SV=1
          Length = 1621

 Score = 37.4 bits (85), Expect = 0.50
 Identities = 20/60 (33%), Positives = 27/60 (45%), Gaps = 6/60 (10%)
 Frame = +3

Query: 21   ALCMSMTAICRRRFAGHGMEGIRKGSCRH------LGTKGQMKACEMVVIRTGMRHQWLT 182
            A CMS T   RR   GHG +G+   + RH      L  +G  + C  V    G   +W+T
Sbjct: 1545 AFCMSSTLTRRRNCPGHGYDGVDGSTPRHVLAAVELSAEGVPRGCVSVDCAVGFEKKWVT 1604


>tr|A5DWQ8|A5DWQ8_LODEL Putative uncharacterized protein
           OS=Lodderomyces elongisporus GN=LELG_01795 PE=4 SV=1
          Length = 209

 Score = 35.8 bits (81), Expect = 1.4
 Identities = 20/52 (38%), Positives = 21/52 (40%)
 Frame = +2

Query: 53  KAFRRARHGRDKKGELQAFGDKGANEGMRDGGYKDRYETSMANDGHSKYRPR 208
           + F R RHG     EL A    G   G   GGY DRY       G   YR R
Sbjct: 123 RQFGRGRHGGQAAQELAAAAANGGGSG---GGYNDRYNGGSGGGGGGNYRGR 171


>tr|B8NHR3|B8NHR3_ASPFL Putative uncharacterized protein
           OS=Aspergillus flavus NRRL3357 GN=AFLA_137570 PE=4 SV=1
          Length = 193

 Score = 35.0 bits (79), Expect = 2.5
 Identities = 22/76 (28%), Positives = 34/76 (44%)
 Frame = +2

Query: 14  VERIMHEHDSHMQKAFRRARHGRDKKGELQAFGDKGANEGMRDGGYKDRYETSMANDGHS 193
           VE     H++ M  A  R R+  D       +  +  +EG+RDG Y+D     +  D H 
Sbjct: 112 VEPSRQRHEAMMSTANARDRYLVDHPYGYYDYPQRKRHEGLRDGAYEDTLAARLDFDKHY 171

Query: 194 KYRPRMLGETSKMKKD 241
           KY     G+ +  K+D
Sbjct: 172 KY----AGDPASSKRD 183


>tr|A3Y519|A3Y519_9GAMM Putative uncharacterized protein
           OS=Marinomonas sp. MED121 GN=MED121_17509 PE=4 SV=1
          Length = 769

 Score = 34.7 bits (78), Expect = 3.2
 Identities = 18/53 (33%), Positives = 29/53 (54%)
 Frame = +2

Query: 26  MHEHDSHMQKAFRRARHGRDKKGELQAFGDKGANEGMRDGGYKDRYETSMAND 184
           MHE D++  K+   +    D++ EL+      ANEG  D  YK+ +ET +A +
Sbjct: 661 MHESDTNDAKSMLESIFAVDEEPELEVSLTANANEGDLDSPYKELFETLIAKE 713


>tr|O44798|O44798_CAEEL Putative uncharacterized protein
           OS=Caenorhabditis elegans GN=C50D2.2 PE=2 SV=1
          Length = 589

 Score = 34.7 bits (78), Expect = 3.2
 Identities = 20/73 (27%), Positives = 35/73 (47%), Gaps = 1/73 (1%)
 Frame = -3

Query: 235 LHFTGFSKHARPIFGVTIVSH*CLIPVLITTISHAFICPFVPKCLQLPFLIPSMP-CPAK 59
           + F+G    +  ++G  +     L+ + +  +S  FIC   P    L F +P +P  PA 
Sbjct: 459 MFFSGLGFSSGYLYGTVLCQIFLLVNIALIILSFLFICAHYPNNTPLDFKVPLVPLIPAL 518

Query: 58  RLLHMAVMLMHNA 20
            LL   +M++H A
Sbjct: 519 SLLINTLMMVHLA 531


>tr|Q2QKB6|Q2QKB6_WHEAT U1 snRNP-interacting 70 kDa protein
           OS=Triticum aestivum GN=U1-70K PE=2 SV=1
          Length = 481

 Score = 33.9 bits (76), Expect = 5.5
 Identities = 29/112 (25%), Positives = 42/112 (37%), Gaps = 20/112 (17%)
 Frame = +2

Query: 2   KSADVERIMHEHDSHMQKAFRRARHGRDKKGELQAF------GDKGANEGMR-------- 139
           +  D ER  HE D    + ++RARH   ++G LQA       G+ G N+           
Sbjct: 363 RDRDYERASHEQDPGRDRDYKRARH-EHERGHLQASDADYGNGEPGYNQHEHHRSHEQYG 421

Query: 140 ---DGGYKDRYETSMANDGHSKYRPRMLGETSKMKKDAEVMPEMY---DYHH 277
              DG  + +      +D HSK      G+    +       E Y   DY H
Sbjct: 422 YGLDGHDRSKRHEHYRDDSHSKMATNHQGQPENAEPAVPEEGEAYEEGDYQH 473


>tr|Q986C3|Q986C3_RHILO Mll7427 protein OS=Rhizobium loti GN=mll7427
           PE=4 SV=1
          Length = 385

 Score = 33.5 bits (75), Expect = 7.2
 Identities = 14/41 (34%), Positives = 21/41 (51%)
 Frame = +2

Query: 20  RIMHEHDSHMQKAFRRARHGRDKKGELQAFGDKGANEGMRD 142
           R  HEH   + ++F  ARHGR + G  ++   +G     RD
Sbjct: 70  RSEHEHSRRVDRSFAEARHGRRRPGRCRSSHPQGCGHRQRD 110


>tr|A9TYG2|A9TYG2_PHYPA Predicted protein OS=Physcomitrella patens
           subsp. patens GN=PHYPADRAFT_172685 PE=4 SV=1
          Length = 200

 Score = 33.5 bits (75), Expect = 7.2
 Identities = 18/41 (43%), Positives = 22/41 (53%)
 Frame = -2

Query: 350 RSPATLLLPSSGIDNHLYVTSTATRDDNHTSQA*LPHPSSF 228
           R+P   LL    +D HL   STA  D NH S+  LPHP  +
Sbjct: 154 RNPPRQLLSPRNVDRHL--ASTALCDRNHISKQHLPHPPRY 192


>tr|Q6GPV7|Q6GPV7_XENLA MGC82581 protein OS=Xenopus laevis GN=gga1
           PE=2 SV=1
          Length = 625

 Score = 33.1 bits (74), Expect = 9.3
 Identities = 22/86 (25%), Positives = 40/86 (46%)
 Frame = -3

Query: 328 SLAVASIITFMLQVLQLVMIIIHLRHNFRILLHFTGFSKHARPIFGVTIVSH*CLIPVLI 149
           SLA  +++   ++   ++ +I++ + +FR+LLHF       RP   V ++S     P+ +
Sbjct: 482 SLANVNVLLESIRPSCILPVIVYDQQSFRVLLHFAKDPPPGRPDVLVVVISMLSTAPLPV 541

Query: 148 TTISHAFICPFVPKCLQLPFLIPSMP 71
           T IS     P   K    P     +P
Sbjct: 542 TGISFQAAVPKTMKVKLQPATGSELP 567


>tr|Q2T7Y4|Q2T7Y4_BURTA ABC transporter, permease
           protein/ATP-binding protein OS=Burkholderia
           thailandensis (strain E264 / ATCC 700388 / DSM 13276 /
           CIP 106301) GN=BTH_II0515 PE=3 SV=1
          Length = 663

 Score = 33.1 bits (74), Expect = 9.3
 Identities = 17/41 (41%), Positives = 21/41 (51%)
 Frame = +2

Query: 35  HDSHMQKAFRRARHGRDKKGELQAFGDKGANEGMRDGGYKD 157
           HD H ++  R AR  RD  G       +GA +G RDGG  D
Sbjct: 615 HDEHDERDERNARGERDNPGGRGGRRTRGAFDGSRDGGQVD 655