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NBDC - LSDB Archive
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AcEST | BlastX Result : Swiss-Prot | BlastX Result : TrEMBL | AcESTcontig | About Libraries
BP918476
Clone id YMU001_000114_A01
Library
Length 343
Definition Adiantum capillus-veneris mRNA. clone: YMU001_000114_A01.
Accession
Tissue type prothallium
Developmental stage -
Contig ID
Sequence 
ATTCGCGGCCGCGAATAAAAGGGATATCATCAACAATCCTGTATGGCAAGAACCACATTC
CATGAGAAGACAACACTCCAACATGTTTTACTGCACCCTCTTTGCCACCAACAGCAGGTC
CAGACTCGCCATGTCTACTACATCCACTTGATGCACATCCTATAGATTGTTTTTGAACAT
GCATATCTTTGGTACCTCCACCAAAGGGGGTTCGAGAGTAGGCCCTGCAGAGATTTCTCC
AGCTTCCATGTCTCCAGCACATAGACCATTGGCAATTCCACTACCAGAATCCTTAGCAGA
ATCCGTCCCAAAATGTGCAGTATCACTTTTCCTACCACTACAA
■■Homology search results ■■ -
sp_hit_id Q61663
Definition sp|Q61663|TLX2_MOUSE T-cell leukemia homeobox protein 2 OS=Mus musculus
Align length 34
Score (bit) 31.6
E-value 1.3
Report 
BLASTX 2.2.19 [Nov-02-2008]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= BP918476|Adiantum capillus-veneris mRNA, clone:
YMU001_000114_A01.
         (325 letters)

Database: uniprot_sprot.fasta 
           412,525 sequences; 148,809,765 total letters

Searching..................................................done



                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

sp|Q61663|TLX2_MOUSE T-cell leukemia homeobox protein 2 OS=Mus m...    32   1.3  
sp|O43763|TLX2_HUMAN T-cell leukemia homeobox protein 2 OS=Homo ...    30   3.8  
sp|A2QWA2|VPS27_ASPNC Vacuolar protein sorting-associated protei...    26   5.3  
sp|P41246|MMP9_RABIT Matrix metalloproteinase-9 OS=Oryctolagus c...    29   6.3  
sp|O95409|ZIC2_HUMAN Zinc finger protein ZIC 2 OS=Homo sapiens G...    29   6.5  
sp|Q7Z5P9|MUC19_HUMAN Mucin-19 OS=Homo sapiens GN=MUC19 PE=1 SV=2      29   6.5  
sp|P31695|NOTC4_MOUSE Neurogenic locus notch homolog protein 4 O...    29   8.2  
sp|Q5T871|LELP1_HUMAN Late cornified envelope-like proline-rich ...    29   8.2  
sp|Q62520|ZIC2_MOUSE Zinc finger protein ZIC 2 OS=Mus musculus G...    29   8.5  
sp|Q95K21|FA71A_MACFA Protein FAM71A OS=Macaca fascicularis GN=F...    29   8.5  

>sp|Q61663|TLX2_MOUSE T-cell leukemia homeobox protein 2 OS=Mus
           musculus GN=Tlx2 PE=2 SV=1
          Length = 284

 Score = 31.6 bits (70), Expect = 1.3
 Identities = 16/34 (47%), Positives = 19/34 (55%)
 Frame = +2

Query: 191 GSRVGPAEISPASMSPAHRPLAIPLPESLAESVP 292
           GS VGP  +      PAHRPL +P P   A +VP
Sbjct: 72  GSGVGPGGVIRV---PAHRPLPVPPPSGAAPAVP 102


>sp|O43763|TLX2_HUMAN T-cell leukemia homeobox protein 2 OS=Homo
           sapiens GN=TLX2 PE=2 SV=2
          Length = 284

 Score = 30.0 bits (66), Expect = 3.8
 Identities = 16/35 (45%), Positives = 19/35 (54%)
 Frame = +2

Query: 188 GGSRVGPAEISPASMSPAHRPLAIPLPESLAESVP 292
           G S VGP  +      PAHRPL +P P   A +VP
Sbjct: 71  GSSGVGPGGVIRV---PAHRPLPVPPPAGGAPAVP 102


>sp|A2QWA2|VPS27_ASPNC Vacuolar protein sorting-associated protein
           27 OS=Aspergillus niger (strain CBS 513.88 / FGSC A1513)
           GN=vps27 PE=3 SV=1
          Length = 703

 Score = 25.8 bits (55), Expect(2) = 5.3
 Identities = 12/32 (37%), Positives = 16/32 (50%)
 Frame = +2

Query: 173 GTSTKGGSRVGPAEISPASMSPAHRPLAIPLP 268
           G     G  VG  ++SP  ++PAH P   P P
Sbjct: 662 GAPVHPGQAVG--DVSPVGVTPAHAPYQQPTP 691



 Score = 22.3 bits (46), Expect(2) = 5.3
 Identities = 15/44 (34%), Positives = 18/44 (40%)
 Frame = +3

Query: 60  PTCFTAPSLPPTAGPDSPCLLHPLDAHPIDCF*TCISLVPPPKG 191
           PT  +AP LP   GP S    + L   P D          PP+G
Sbjct: 613 PTAPSAPDLPADQGPASG---YGLQRQPTDPSAALYYAPQPPQG 653


>sp|P41246|MMP9_RABIT Matrix metalloproteinase-9 OS=Oryctolagus
           cuniculus GN=MMP9 PE=2 SV=1
          Length = 707

 Score = 29.3 bits (64), Expect = 6.3
 Identities = 17/41 (41%), Positives = 20/41 (48%)
 Frame = +3

Query: 21  LYGKNHIP*EDNTPTCFTAPSLPPTAGPDSPCLLHPLDAHP 143
           LYG N  P    T T    P+ PPTA P  P  + P + HP
Sbjct: 442 LYGPNPNPQPPATTTPEPQPTAPPTACPTWPATVRPSE-HP 481


>sp|O95409|ZIC2_HUMAN Zinc finger protein ZIC 2 OS=Homo sapiens
           GN=ZIC2 PE=1 SV=2
          Length = 532

 Score = 29.3 bits (64), Expect = 6.5
 Identities = 18/62 (29%), Positives = 28/62 (45%), Gaps = 7/62 (11%)
 Frame = -1

Query: 205 AYSRTPFGGGTKDMHVQKQSIGCASSGCSRHGESGPAVGG-------KEGAVKHVGVLSS 47
           +YS  PF   T+D   + +  G ++ G  +HG  GP  GG        +G +   G+   
Sbjct: 107 SYSGPPFNS-TRDFLFRSRGFGDSAPGGGQHGLFGPGAGGLHHAHSDAQGHLLFPGLPEQ 165

Query: 46  HG 41
           HG
Sbjct: 166 HG 167


>sp|Q7Z5P9|MUC19_HUMAN Mucin-19 OS=Homo sapiens GN=MUC19 PE=1 SV=2
          Length = 6254

 Score = 29.3 bits (64), Expect = 6.5
 Identities = 16/32 (50%), Positives = 19/32 (59%)
 Frame = -1

Query: 133  SSGCSRHGESGPAVGGKEGAVKHVGVLSSHGM 38
            SS  S+ G +GP+VGGK GA       SS GM
Sbjct: 1218 SSESSKSGTTGPSVGGKTGATSSEAT-SSEGM 1248


>sp|P31695|NOTC4_MOUSE Neurogenic locus notch homolog protein 4 OS=Mus
            musculus GN=Notch4 PE=1 SV=2
          Length = 1964

 Score = 28.9 bits (63), Expect = 8.2
 Identities = 12/20 (60%), Positives = 13/20 (65%)
 Frame = +3

Query: 60   PTCFTAPSLPPTAGPDSPCL 119
            P C T P+ PP  GP SPCL
Sbjct: 1119 PDCLTPPA-PPGCGPPSPCL 1137


>sp|Q5T871|LELP1_HUMAN Late cornified envelope-like proline-rich
           protein 1 OS=Homo sapiens GN=LELP1 PE=2 SV=1
          Length = 98

 Score = 28.9 bits (63), Expect = 8.2
 Identities = 14/43 (32%), Positives = 17/43 (39%)
 Frame = +3

Query: 60  PTCFTAPSLPPTAGPDSPCLLHPLDAHPIDCF*TCISLVPPPK 188
           P C   PS  P++ P  PC        P  C   C    PPP+
Sbjct: 56  PKCLPCPSQSPSSCPPQPCTKPCPPKCPSSCPHACPPPCPPPE 98


>sp|Q62520|ZIC2_MOUSE Zinc finger protein ZIC 2 OS=Mus musculus
           GN=Zic2 PE=1 SV=2
          Length = 530

 Score = 28.9 bits (63), Expect = 8.5
 Identities = 14/40 (35%), Positives = 21/40 (52%)
 Frame = -1

Query: 205 AYSRTPFGGGTKDMHVQKQSIGCASSGCSRHGESGPAVGG 86
           +YS  PF   T+D   + +  G ++ G  +HG  GP  GG
Sbjct: 107 SYSGPPFNS-TRDFLFRSRGFGDSAPGGGQHGLFGPGAGG 145


>sp|Q95K21|FA71A_MACFA Protein FAM71A OS=Macaca fascicularis
           GN=FAM71A PE=2 SV=1
          Length = 594

 Score = 28.9 bits (63), Expect = 8.5
 Identities = 17/40 (42%), Positives = 19/40 (47%), Gaps = 4/40 (10%)
 Frame = -1

Query: 154 KQSIGCASSGCSRHGESGPAVG----GKEGAVKHVGVLSS 47
           K+  GC+S G SRHGES   V      KE    H    SS
Sbjct: 473 KKEKGCSSPGSSRHGESHKGVSHTPISKESRTSHKSGRSS 512
tr_hit_id B6KBK5
Definition tr|B6KBK5|B6KBK5_TOXGO Putative uncharacterized protein OS=Toxoplasma gondii ME49
Align length 35
Score (bit) 27.7
E-value 1.9
Report 
BLASTX 2.2.19 [Nov-02-2008]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= BP918476|Adiantum capillus-veneris mRNA, clone:
YMU001_000114_A01.
         (325 letters)

Database: uniprot_trembl.fasta 
           7,341,751 sequences; 2,391,615,440 total letters

Searching..................................................done



                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

tr|B6KBK5|B6KBK5_TOXGO Putative uncharacterized protein OS=Toxop...    28   1.9  
tr|B6KEA9|B6KEA9_TOXGO Putative uncharacterized protein OS=Toxop...    31   3.1  
tr|Q0UYZ9|Q0UYZ9_PHANO Putative uncharacterized protein OS=Phaeo...    34   4.1  
tr|B7SWG9|B7SWG9_9HIV1 Nef protein OS=Human immunodeficiency vir...    34   4.1  
tr|Q4T3C8|Q4T3C8_TETNG Chromosome undetermined SCAF10100, whole ...    34   4.1  
tr|B5HQ94|B5HQ94_9ACTO Putative uncharacterized protein OS=Strep...    33   5.4  
tr|B6U9B6|B6U9B6_MAIZE Delta DNA polymerase OS=Zea mays PE=4 SV=1      33   5.4  
tr|B6T9Q8|B6T9Q8_MAIZE Delta DNA polymerase OS=Zea mays PE=4 SV=1      33   5.4  
tr|B4FJU3|B4FJU3_MAIZE Putative uncharacterized protein OS=Zea m...    33   5.4  
tr|B2ZRZ7|B2ZRZ7_DERVA Proprotein convertase type 2 OS=Dermacent...    33   7.0  
tr|Q2MEW7|Q2MEW7_STRHI Putative hexosamine-6-dehydrogenase OS=St...    33   9.2  
tr|Q4DYT6|Q4DYT6_TRYCR Mucin-associated surface protein (MASP), ...    33   9.2  

>tr|B6KBK5|B6KBK5_TOXGO Putative uncharacterized protein
           OS=Toxoplasma gondii ME49 GN=TGME49_060160 PE=4 SV=1
          Length = 954

 Score = 27.7 bits (60), Expect(2) = 1.9
 Identities = 14/35 (40%), Positives = 20/35 (57%)
 Frame = +2

Query: 218 SPASMSPAHRPLAIPLPESLAESVPKCAVSLFLPL 322
           SPAS  P   PL+ PL  S++   P C+ + F P+
Sbjct: 590 SPAS--PLSSPLSSPLSSSVSSPSPSCSFASFSPV 622



 Score = 26.2 bits (56), Expect(2) = 1.9
 Identities = 9/18 (50%), Positives = 14/18 (77%)
 Frame = +3

Query: 60  PTCFTAPSLPPTAGPDSP 113
           P+ F++PS PP++ P SP
Sbjct: 570 PSSFSSPSSPPSSPPSSP 587


>tr|B6KEA9|B6KEA9_TOXGO Putative uncharacterized protein
           OS=Toxoplasma gondii ME49 GN=TGME49_025090 PE=4 SV=1
          Length = 2476

 Score = 31.2 bits (69), Expect(2) = 3.1
 Identities = 14/31 (45%), Positives = 19/31 (61%)
 Frame = +2

Query: 215 ISPASMSPAHRPLAIPLPESLAESVPKCAVS 307
           +SPAS+SPA  P     P S++ S P C+ S
Sbjct: 667 LSPASLSPASFPFHPAYPSSVSHSYPSCSSS 697



 Score = 21.9 bits (45), Expect(2) = 3.1
 Identities = 9/17 (52%), Positives = 10/17 (58%)
 Frame = +3

Query: 78  PSLPPTAGPDSPCLLHP 128
           P  PP +GP SP  L P
Sbjct: 658 PPPPPPSGPLSPASLSP 674


>tr|Q0UYZ9|Q0UYZ9_PHANO Putative uncharacterized protein
           OS=Phaeosphaeria nodorum GN=SNOG_03015 PE=4 SV=1
          Length = 227

 Score = 33.9 bits (76), Expect = 4.1
 Identities = 27/76 (35%), Positives = 35/76 (46%)
 Frame = +2

Query: 77  TLFATNSRSRLAMSTTST*CTSYRLFLNMHIFGTSTKGGSRVGPAEISPASMSPAHRPLA 256
           T  AT S S+ A ++T+    SY          TST       P  + P+S  PAH P  
Sbjct: 88  TASATTSTSQNATTSTAPGAQSYTASPPAATSHTSTTPPPSSLP--LPPSSTPPAHSP-- 143

Query: 257 IPLPESLAESVPKCAV 304
            P+P S + S PKC V
Sbjct: 144 -PIPASTSTSSPKCPV 158


>tr|B7SWG9|B7SWG9_9HIV1 Nef protein OS=Human immunodeficiency virus
           1 GN=nef PE=4 SV=1
          Length = 201

 Score = 33.9 bits (76), Expect = 4.1
 Identities = 13/28 (46%), Positives = 18/28 (64%)
 Frame = +3

Query: 66  CFTAPSLPPTAGPDSPCLLHPLDAHPID 149
           CF    + P AG ++ CLLHP++ H ID
Sbjct: 142 CFKLVPVEPEAGGETACLLHPINQHGID 169


>tr|Q4T3C8|Q4T3C8_TETNG Chromosome undetermined SCAF10100, whole
           genome shotgun sequence. (Fragment) OS=Tetraodon
           nigroviridis GN=GSTENG00007907001 PE=4 SV=1
          Length = 1239

 Score = 33.9 bits (76), Expect = 4.1
 Identities = 17/42 (40%), Positives = 22/42 (52%), Gaps = 1/42 (2%)
 Frame = +3

Query: 63  TCFTAPSLPPTAGPDSPCLLHPLDAHPIDCF*TCI-SLVPPP 185
           +C ++P  PP   P    LL PL   P+ C  +C  S VPPP
Sbjct: 216 SCLSSPVSPPPVSPPLFLLLFPLLLSPLPCVSSCFPSSVPPP 257


>tr|B5HQ94|B5HQ94_9ACTO Putative uncharacterized protein
           OS=Streptomyces sviceus ATCC 29083 GN=SSEG_01579 PE=4
           SV=1
          Length = 535

 Score = 33.5 bits (75), Expect = 5.4
 Identities = 16/38 (42%), Positives = 20/38 (52%)
 Frame = +2

Query: 206 PAEISPASMSPAHRPLAIPLPESLAESVPKCAVSLFLP 319
           PA +S  S  PAHRP A P+PE L   +P    +   P
Sbjct: 292 PAPVSAPSGPPAHRPPAAPVPEPLPLPLPTAGFAAVAP 329


>tr|B6U9B6|B6U9B6_MAIZE Delta DNA polymerase OS=Zea mays PE=4 SV=1
          Length = 94

 Score = 33.5 bits (75), Expect = 5.4
 Identities = 21/56 (37%), Positives = 26/56 (46%), Gaps = 5/56 (8%)
 Frame = -1

Query: 181 GGTKDMHVQKQSIGCASSGCS-----RHGESGPAVGGKEGAVKHVGVLSSHGMWFL 29
           GG KD + QK+  G A +  S     RH   G +VG  + A      L SHG W L
Sbjct: 4   GGVKDFYRQKKKGGVAKTASSSKNKTRHYTGGASVGASDAA--QTSALVSHGSWDL 57


>tr|B6T9Q8|B6T9Q8_MAIZE Delta DNA polymerase OS=Zea mays PE=4 SV=1
          Length = 117

 Score = 33.5 bits (75), Expect = 5.4
 Identities = 21/56 (37%), Positives = 26/56 (46%), Gaps = 5/56 (8%)
 Frame = -1

Query: 181 GGTKDMHVQKQSIGCASSGCS-----RHGESGPAVGGKEGAVKHVGVLSSHGMWFL 29
           GG KD + QK+  G A +  S     RH   G +VG  + A      L SHG W L
Sbjct: 4   GGVKDFYRQKKKGGVAKTASSSKNKTRHYTGGASVGASDAA--QTSALVSHGSWDL 57


>tr|B4FJU3|B4FJU3_MAIZE Putative uncharacterized protein OS=Zea mays
           PE=2 SV=1
          Length = 131

 Score = 33.5 bits (75), Expect = 5.4
 Identities = 21/56 (37%), Positives = 26/56 (46%), Gaps = 5/56 (8%)
 Frame = -1

Query: 181 GGTKDMHVQKQSIGCASSGCS-----RHGESGPAVGGKEGAVKHVGVLSSHGMWFL 29
           GG KD + QK+  G A +  S     RH   G +VG  + A      L SHG W L
Sbjct: 4   GGVKDFYRQKKKGGVAKTASSSKNKTRHYTGGASVGASDAA--QTSALVSHGSWDL 57


>tr|B2ZRZ7|B2ZRZ7_DERVA Proprotein convertase type 2 OS=Dermacentor
           variabilis PE=2 SV=1
          Length = 654

 Score = 33.1 bits (74), Expect = 7.0
 Identities = 20/51 (39%), Positives = 27/51 (52%), Gaps = 2/51 (3%)
 Frame = -2

Query: 318 GRKSDTAHF--GTDSAKDSGSGIANGLCAGDMEAGEISAGPTLEPPLVEVP 172
           GR +  AH   GT  AKDSGS  A G   G ++   +    T +PP V++P
Sbjct: 573 GRWTLEAHIDRGTGGAKDSGSDDAGGEARGFLKEWTLMIHGTRDPPYVDLP 623