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AcEST | BlastX Result : Swiss-Prot | BlastX Result : TrEMBL | AcESTcontig | About Libraries
NBDC - LSDB Archive
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AcEST | BlastX Result : Swiss-Prot | BlastX Result : TrEMBL | AcESTcontig | About Libraries
BP918478
Clone id YMU001_000114_A03
Library
Length 558
Definition Adiantum capillus-veneris mRNA. clone: YMU001_000114_A03.
Accession
Tissue type prothallium
Developmental stage -
Contig ID -
Sequence 
GTTTACTGGTTTGTCTCCTTGAAGAACCACCTGGGAAAATCCGCATAATCCATCCAAGAA
CCCGCTCCACCACCTCATCTCCTTCATCCACATAATCATTGCCCTGTGATTCTATCTCAA
TAGAGTTCGCAGTAACCGCATTTCCCCCATACGCCATATTTTGAGAAACAGCTAATTCCA
AGCGCTGTGTCTGTGTTTCTAGCTTCTTTGACAGTTCATTGCTCAATGCCTCAAATTCAG
TAGCTCTTGCAGCTTCTCTTCTAAGGGATTCTAGCAAAGCCTCCTTTTCTGAAAACATCT
CTGTAATCAACTTATCAATGCTATCAACAGCTCTCAAGTCTTGTGTCGACAAGGTAGCGA
AAGTAGATGGCACACCGACACCTATGAAATCAGGTACAGAGACTGCCATTGATGAAGACG
TGGCTTCATCTGCATCATCCCTAGTCTTATCCGCTGAATGCAATGTCCAAGCGTTTTGGA
TCTGCGGTACAAGATCTTCTGTAGAGGTTGAGGCATCCCTAGAATCCCTTTGAGAACTTT
CTCTGGCACTCACTGTGG
■■Homology search results ■■ -
sp_hit_id Q8CHG3
Definition sp|Q8CHG3|GCC2_MOUSE GRIP and coiled-coil domain-containing protein 2 OS=Mus musculus
Align length 105
Score (bit) 30.4
E-value 6.1
Report 
BLASTX 2.2.19 [Nov-02-2008]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= BP918478|Adiantum capillus-veneris mRNA, clone:
YMU001_000114_A03.
         (558 letters)

Database: uniprot_sprot.fasta 
           412,525 sequences; 148,809,765 total letters

Searching..................................................done



                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

sp|Q8CHG3|GCC2_MOUSE GRIP and coiled-coil domain-containing prot...    30   6.1  
sp|P49454|CENPF_HUMAN Centromere protein F OS=Homo sapiens GN=CE...    30   6.1  

>sp|Q8CHG3|GCC2_MOUSE GRIP and coiled-coil domain-containing protein
           2 OS=Mus musculus GN=Gcc2 PE=1 SV=2
          Length = 1679

 Score = 30.4 bits (67), Expect = 6.1
 Identities = 24/105 (22%), Positives = 47/105 (44%)
 Frame = -3

Query: 373 VPSTFATLSTQDLRAVDSIDKLITEMFSEKEALLESLXXXXXXXXXXXALSNELSKKLET 194
           +   F T+  Q    V  + + +   F+EK+ALLE++           +   EL  +LE+
Sbjct: 496 ISQEFETMKQQQASDVHELQQKLRSAFNEKDALLETVNRLQGENEKLLS-QQELVPELES 554

Query: 193 QTQRLELAVSQNMAYGGNAVTANSIEIESQGNDYVDEGDEVVERV 59
             + L+   S  +A  G   T    E+E++ +    E D+ + ++
Sbjct: 555 TIKNLQADNSMYLASLGQKDTMLQ-ELEAKISSLAKEKDDFISKI 598


>sp|P49454|CENPF_HUMAN Centromere protein F OS=Homo sapiens GN=CENPF
           PE=1 SV=2
          Length = 3210

 Score = 30.4 bits (67), Expect = 6.1
 Identities = 21/78 (26%), Positives = 40/78 (51%), Gaps = 1/78 (1%)
 Frame = -3

Query: 316 DKLITEMFSEKEALLESLXXXXXXXXXXXALSNELSKKLET-QTQRLELAVSQNMAYGGN 140
           +KL+T+M SEKE L   +             S+E ++++ T +  R  L+V     +  N
Sbjct: 627 EKLLTQMESEKENLQSKINHLETCLKTQQIKSHEYNERVRTLEMDRENLSVEIRNLH--N 684

Query: 139 AVTANSIEIESQGNDYVD 86
            + + S+E+E+Q   Y++
Sbjct: 685 VLDSKSVEVETQKLAYME 702
tr_hit_id A5BYG1
Definition tr|A5BYG1|A5BYG1_VITVI Putative uncharacterized protein OS=Vitis vinifera
Align length 183
Score (bit) 112.0
E-value 1.0e-23
Report 
BLASTX 2.2.19 [Nov-02-2008]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= BP918478|Adiantum capillus-veneris mRNA, clone:
YMU001_000114_A03.
         (558 letters)

Database: uniprot_trembl.fasta 
           7,341,751 sequences; 2,391,615,440 total letters

Searching..................................................done



                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

tr|A5BYG1|A5BYG1_VITVI Putative uncharacterized protein OS=Vitis...   112   1e-23
tr|A2WY77|A2WY77_ORYSI Putative uncharacterized protein OS=Oryza...   110   4e-23
tr|Q8S0A4|Q8S0A4_ORYSJ Heavy meromyosin-like (Putative uncharact...   110   5e-23
tr|Q84VA3|Q84VA3_ORYSJ Heavy meromyosin-like protein (Fragment) ...   110   5e-23
tr|A7NXN5|A7NXN5_VITVI Chromosome chr5 scaffold_2, whole genome ...   100   4e-20
tr|Q9LIQ9|Q9LIQ9_ARATH Genomic DNA, chromosome 3, BAC clone:F14O...   100   9e-20
tr|A9RHP8|A9RHP8_PHYPA Predicted protein OS=Physcomitrella paten...    52   2e-05
tr|A9VAJ5|A9VAJ5_MONBE Predicted protein OS=Monosiga brevicollis...    40   0.065
tr|B4LCP3|B4LCP3_DROVI GJ11268 OS=Drosophila virilis GN=GJ11268 ...    35   2.7  

>tr|A5BYG1|A5BYG1_VITVI Putative uncharacterized protein OS=Vitis
           vinifera GN=VITISV_004427 PE=4 SV=1
          Length = 443

 Score =  112 bits (281), Expect = 1e-23
 Identities = 71/183 (38%), Positives = 99/183 (54%), Gaps = 5/183 (2%)
 Frame = -3

Query: 535 SQRDSRDASTSTEDLVPQ-----IQNAWTLHSADKTRDDADEATSSSMAVSVPDFIGVGV 371
           S  D +D STST+DLV +     I    +L   +     A+E +S  +   +PD   +  
Sbjct: 262 SPTDRKDVSTSTDDLVNEDNACMIPETSSLEMLNSASVQANELSSFPL---LPDGGQMNF 318

Query: 370 PSTFATLSTQDLRAVDSIDKLITEMFSEKEALLESLXXXXXXXXXXXALSNELSKKLETQ 191
             +   +    +R + +I+ LI+E+  EKE L+++L            L+ ELS+KLE Q
Sbjct: 319 EVSSVNIPADQMRMIQNINALISELALEKEELMQALVTESSQSSKLKDLNKELSRKLEVQ 378

Query: 190 TQRLELAVSQNMAYGGNAVTANSIEIESQGNDYVDEGDEVVERVLGWIMRIFPGGSSRRQ 11
           TQRLEL  SQ+MA            I      Y DEGDEVVERVLGWIMR+FPGG ++R+
Sbjct: 379 TQRLELLTSQSMANEVIQARQPDSRIMHDNAAYADEGDEVVERVLGWIMRLFPGGPAKRR 438

Query: 10  TSK 2
           TSK
Sbjct: 439 TSK 441


>tr|A2WY77|A2WY77_ORYSI Putative uncharacterized protein OS=Oryza
            sativa subsp. indica GN=OsI_04881 PE=4 SV=1
          Length = 760

 Score =  110 bits (276), Expect = 4e-23
 Identities = 79/187 (42%), Positives = 107/187 (57%), Gaps = 3/187 (1%)
 Frame = -3

Query: 553  VSARESSQRDSRDASTSTEDL-VPQIQNAWTLHSADKTRDDADEATSSSMAVSVPDFIGV 377
            V+  E    D RDAST+TEDL   +  ++ TL SA  T +D +  TS S + +V DF  +
Sbjct: 579  VNIIEKPSADKRDASTATEDLDTGESSSSETLTSAIDTVEDGE--TSVSRSNNVADFTYL 636

Query: 376  GVPSTFATLSTQDLRAVDSIDKLITEMFSEKEALLESLXXXXXXXXXXXALSNELSKKLE 197
               S+  ++    LR +D+I+ L++E+  E+E LL +L            L+ +L++KLE
Sbjct: 637  EEVSS--SIPHDQLRMIDNINSLMSELAVEREELLRALRIESSNCSKLKELNKDLTQKLE 694

Query: 196  TQTQRLELAVSQNMAYGGNAVTANSIEIES--QGNDYVDEGDEVVERVLGWIMRIFPGGS 23
             QT RLEL  SQ MA     V    I+  S      Y DEGDEVVERVLGWIM++FPGG 
Sbjct: 695  IQTHRLELLSSQRMA--NENVLPKPIDTRSINDATMYADEGDEVVERVLGWIMKLFPGGP 752

Query: 22   SRRQTSK 2
             RR TSK
Sbjct: 753  KRR-TSK 758


>tr|Q8S0A4|Q8S0A4_ORYSJ Heavy meromyosin-like (Putative
            uncharacterized protein) (Os01g0911800 protein) OS=Oryza
            sativa subsp. japonica GN=P0470A12.17 PE=4 SV=1
          Length = 760

 Score =  110 bits (275), Expect = 5e-23
 Identities = 79/187 (42%), Positives = 108/187 (57%), Gaps = 3/187 (1%)
 Frame = -3

Query: 553  VSARESSQRDSRDASTSTEDL-VPQIQNAWTLHSADKTRDDADEATSSSMAVSVPDFIGV 377
            V+  E    D RDAST+TEDL   +  ++ TL SA  T +D +  TS S + +V DF  +
Sbjct: 579  VNIIEKPSADKRDASTATEDLDTGESSSSETLTSAIDTVEDGE--TSVSRSNNVADFTYL 636

Query: 376  GVPSTFATLSTQDLRAVDSIDKLITEMFSEKEALLESLXXXXXXXXXXXALSNELSKKLE 197
               S+  ++    LR +D+I+ L++E+  E+E LL +L            L+ +L++KLE
Sbjct: 637  EEVSS--SIPHDQLRMIDNINSLMSELAVEREELLRALRIESSNCSKLKELNKDLTQKLE 694

Query: 196  TQTQRLELAVSQNMAYGGNAVTANSIEIESQGND--YVDEGDEVVERVLGWIMRIFPGGS 23
             QT RLEL  SQ MA     V    I+  S  +   Y DEGDEVVERVLGWIM++FPGG 
Sbjct: 695  IQTHRLELLSSQRMA--NENVLPKPIDTRSINDATLYADEGDEVVERVLGWIMKLFPGGP 752

Query: 22   SRRQTSK 2
             RR TSK
Sbjct: 753  KRR-TSK 758


>tr|Q84VA3|Q84VA3_ORYSJ Heavy meromyosin-like protein (Fragment)
           OS=Oryza sativa subsp. japonica PE=2 SV=1
          Length = 421

 Score =  110 bits (275), Expect = 5e-23
 Identities = 79/187 (42%), Positives = 108/187 (57%), Gaps = 3/187 (1%)
 Frame = -3

Query: 553 VSARESSQRDSRDASTSTEDL-VPQIQNAWTLHSADKTRDDADEATSSSMAVSVPDFIGV 377
           V+  E    D RDAST+TEDL   +  ++ TL SA  T +D +  TS S + +V DF  +
Sbjct: 240 VNIIEKPSADKRDASTATEDLDTGESSSSETLTSAIDTVEDGE--TSVSRSNNVADFTYL 297

Query: 376 GVPSTFATLSTQDLRAVDSIDKLITEMFSEKEALLESLXXXXXXXXXXXALSNELSKKLE 197
              S+  ++    LR +D+I+ L++E+  E+E LL +L            L+ +L++KLE
Sbjct: 298 EEVSS--SIPHDQLRMIDNINSLMSELAVEREELLRALRIESSNCSKLKELNKDLTQKLE 355

Query: 196 TQTQRLELAVSQNMAYGGNAVTANSIEIESQGND--YVDEGDEVVERVLGWIMRIFPGGS 23
            QT RLEL  SQ MA     V    I+  S  +   Y DEGDEVVERVLGWIM++FPGG 
Sbjct: 356 IQTHRLELLSSQRMA--NENVLPKPIDTRSINDATLYADEGDEVVERVLGWIMKLFPGGP 413

Query: 22  SRRQTSK 2
            RR TSK
Sbjct: 414 KRR-TSK 419


>tr|A7NXN5|A7NXN5_VITVI Chromosome chr5 scaffold_2, whole genome
           shotgun sequence OS=Vitis vinifera GN=GSVIVT00020406001
           PE=4 SV=1
          Length = 151

 Score =  100 bits (250), Expect = 4e-20
 Identities = 58/142 (40%), Positives = 79/142 (55%)
 Frame = -3

Query: 427 EATSSSMAVSVPDFIGVGVPSTFATLSTQDLRAVDSIDKLITEMFSEKEALLESLXXXXX 248
           +A   S    +PD   +    +   +    +R + +I+ LI+E+  EKE L+++L     
Sbjct: 8   QANELSSFPLLPDGGQMNFEVSSVNIPADQMRMIQNINALISELALEKEELMQALVTESS 67

Query: 247 XXXXXXALSNELSKKLETQTQRLELAVSQNMAYGGNAVTANSIEIESQGNDYVDEGDEVV 68
                  L+ ELS+KLE QTQRLEL  SQ+MA            I      Y DEGDEVV
Sbjct: 68  QSSKLKDLNKELSRKLEVQTQRLELLTSQSMANEVIQARQPDSRIMHDNAAYADEGDEVV 127

Query: 67  ERVLGWIMRIFPGGSSRRQTSK 2
           ERVLGWIMR+FPGG ++R+TSK
Sbjct: 128 ERVLGWIMRLFPGGPAKRRTSK 149


>tr|Q9LIQ9|Q9LIQ9_ARATH Genomic DNA, chromosome 3, BAC clone:F14O13
            OS=Arabidopsis thaliana PE=4 SV=1
          Length = 714

 Score = 99.8 bits (247), Expect = 9e-20
 Identities = 65/177 (36%), Positives = 99/177 (55%), Gaps = 4/177 (2%)
 Frame = -3

Query: 520  RDASTSTEDLVPQIQNAWTLHSADKTRDDAD--EATSSSMAVSVPDFIGVGVPSTFATLS 347
            ++ STSTE L     +  T  S+++  D     E+ SS+ A+ +P+   + +     ++ 
Sbjct: 540  KNVSTSTEGLAI---SDTTPESSNQETDSTTLLESDSSNTAI-IPETRQLTLEGFSLSVP 595

Query: 346  TQDLRAVDSIDKLITEMFSEKEALLESLXXXXXXXXXXXALSNELSKKLETQTQRLELAV 167
               +R + +I+ LI E+  EKE L+++L            L+ ELS+KLE QTQRLEL  
Sbjct: 596  ADQMRVIHNINTLIAELAIEKEELVQALSSELSRSAHVQELNKELSRKLEAQTQRLELVT 655

Query: 166  SQNMAYGGNAVTANSIE--IESQGNDYVDEGDEVVERVLGWIMRIFPGGSSRRQTSK 2
            +Q MA    +      +  +  +     DEGDEVVERVLGWIM++FPGG S+R+TSK
Sbjct: 656  AQKMAIDNVSPEKQQPDTHVVQERTPIADEGDEVVERVLGWIMKMFPGGPSKRRTSK 712


>tr|A9RHP8|A9RHP8_PHYPA Predicted protein OS=Physcomitrella patens
           subsp. patens GN=PHYPADRAFT_66374 PE=4 SV=1
          Length = 493

 Score = 52.4 bits (124), Expect = 2e-05
 Identities = 47/197 (23%), Positives = 92/197 (46%), Gaps = 23/197 (11%)
 Frame = -3

Query: 532 QRDSRDASTSTEDLVPQIQ-------NAWTLHSADKTRDDADEATS-----------SSM 407
           QR   DASTST+DL   ++       N   +HS          + S           SS+
Sbjct: 292 QRLFADASTSTDDLPSPLRTSTEGSSNPLPIHSLTPGTKSPLSSNSYAHHFLSDLGHSSL 351

Query: 406 AVSVPD-----FIGVGVPSTFATLSTQDLRAVDSIDKLITEMFSEKEALLESLXXXXXXX 242
           + S  +     +  + +P++  ++    ++ + +I  +I  +  E+  ++ +L       
Sbjct: 352 SRSTNNPQSGGYRSIQLPASCTSIPADLMKIIRNISDVIISISEERVTIVNALKTESKVA 411

Query: 241 XXXXALSNELSKKLETQTQRLELAVSQNMAYGGNAVTANSIEIESQGNDYVDEGDEVVER 62
               AL+ +LS++LE+   +LE   +Q M +  ++    +    +  + + DEGDEVV+R
Sbjct: 412 ADLRALNADLSRQLESTKGQLERLAAQRMLFRSSSNELTTARNAAALHSF-DEGDEVVDR 470

Query: 61  VLGWIMRIFPGGSSRRQ 11
           +L WIM++F   +S R+
Sbjct: 471 MLIWIMQLFLSRTSSRR 487


>tr|A9VAJ5|A9VAJ5_MONBE Predicted protein OS=Monosiga brevicollis
            GN=34261 PE=4 SV=1
          Length = 2519

 Score = 40.4 bits (93), Expect = 0.065
 Identities = 26/75 (34%), Positives = 44/75 (58%), Gaps = 1/75 (1%)
 Frame = -3

Query: 496  DLVPQIQNAWTLHSADKTRDDAD-EATSSSMAVSVPDFIGVGVPSTFATLSTQDLRAVDS 320
            DL PQ+++   LH  + T D++  +       +S PDF+ +  P  F +LST +L A+DS
Sbjct: 1184 DLYPQVESTMWLH--ELTLDESSLQGILCHYVLSHPDFV-IEFPRLFNSLSTTELVALDS 1240

Query: 319  IDKLITEMFSEKEAL 275
            + KL   +F +++AL
Sbjct: 1241 LSKLRLLVFLQEQAL 1255


>tr|B4LCP3|B4LCP3_DROVI GJ11268 OS=Drosophila virilis GN=GJ11268 PE=4
            SV=1
          Length = 1936

 Score = 35.0 bits (79), Expect = 2.7
 Identities = 33/168 (19%), Positives = 69/168 (41%), Gaps = 2/168 (1%)
 Frame = -3

Query: 517  DASTSTEDLVPQIQNAWTLHSADKTRDDADEATSSSMAVSVPDFIGVG--VPSTFATLST 344
            + S+   + V +  N+    S+  T   +DE++ SS       F+G G    S   T +T
Sbjct: 873  EESSGQTNTVVETGNSLESGSSSNTITSSDESSQSSSTSGEDPFVGGGGSQQSGSTTTTT 932

Query: 343  QDLRAVDSIDKLITEMFSEKEALLESLXXXXXXXXXXXALSNELSKKLETQTQRLELAVS 164
                 + S+D ++ E F +   ++E+            + SN ++   E+ +Q    +  
Sbjct: 933  TSEETISSVDPVVEESFGQTNTVVET-----GNNVESGSSSNTITSSDES-SQSSSTSGE 986

Query: 163  QNMAYGGNAVTANSIEIESQGNDYVDEGDEVVERVLGWIMRIFPGGSS 20
             ++  GG++  + S    +   + +   D VVE   G    +   G++
Sbjct: 987  DSIVGGGDSQQSGSTTTTTTSEETISSVDPVVEESSGQTNTVVETGNN 1034