BP918480
Clone id YMU001_000114_A05
Library
Length 222
Definition Adiantum capillus-veneris mRNA. clone: YMU001_000114_A05.
Accession
Tissue type prothallium
Developmental stage -
Contig ID
Sequence
CCGGCGATACCAAATTCAAGGGTAACCTGGATGCCTCTGGTCGCAAAGCTAAGGGAAAGG
GAGTCTACCAATATACCAAGAAGTATGGTGCTAATGTCGATGGATACAGGCCTATCTATG
TCCCAGAGGAATGGTCAACTTCTGGTGATAGCTATGCTGCAGGTCCTACTGGATTGGCTA
TCTGGGCAGTTACCCTCGGCGCTATCTTGTTGGGTGAGTACC
■■Homology search results ■■ -
sp_hit_id Q40070
Definition sp|Q40070|PSBR_HORVU Photosystem II 10 kDa polypeptide, chloroplastic OS=Hordeum vulgare
Align length 71
Score (bit) 107.0
E-value 2.0e-23
Report
BLASTX 2.2.19 [Nov-02-2008]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.

Query= BP918480|Adiantum capillus-veneris mRNA, clone:
YMU001_000114_A05.
(222 letters)

Database: uniprot_sprot.fasta
412,525 sequences; 148,809,765 total letters

Searching..................................................done



Score E
Sequences producing significant alignments: (bits) Value

sp|Q40070|PSBR_HORVU Photosystem II 10 kDa polypeptide, chloropl... 107 2e-23
sp|P06183|PSBR_SOLTU Photosystem II 10 kDa polypeptide, chloropl... 101 1e-21
sp|Q40163|PSBR_SOLLC Photosystem II 10 kDa polypeptide, chloropl... 100 2e-21
sp|Q40519|PSBR_TOBAC Photosystem II 10 kDa polypeptide, chloropl... 99 6e-21
sp|P27202|PSBR_ARATH Photosystem II 10 kDa polypeptide, chloropl... 97 2e-20
sp|P10690|PSBR_SPIOL Photosystem II 10 kDa polypeptide, chloropl... 97 2e-20
sp|P49108|PSBR_BRACM Photosystem II 10 kDa polypeptide, chloropl... 97 3e-20
sp|Q9Z1J1|TF7L1_MOUSE Transcription factor 7-like 1 OS=Mus muscu... 30 4.8
sp|P75475|ARCA_MYCPN Putative arginine deiminase OS=Mycoplasma p... 29 8.2
sp|Q920F3|KHDR2_RAT KH domain-containing, RNA-binding, signal tr... 29 8.2
sp|Q9WU01|KHDR2_MOUSE KH domain-containing, RNA-binding, signal ... 29 8.2

>sp|Q40070|PSBR_HORVU Photosystem II 10 kDa polypeptide,
chloroplastic OS=Hordeum vulgare GN=PSBR PE=3 SV=1
Length = 138

Score = 107 bits (267), Expect = 2e-23
Identities = 50/71 (70%), Positives = 53/71 (74%)
Frame = +3

Query: 3 GDTKFKGNLDASGRKAKGKGVYQYTKKYGANVDGYRPIYVPEEWSTSGDSYAAGPTGLAI 182
G FK +DASGR AKGKGVYQ+ KYGANVDGY PIY PEEWS SGD Y G TGL +
Sbjct: 55 GGVAFKEGVDASGRVAKGKGVYQFADKYGANVDGYSPIYTPEEWSPSGDVYVGGKTGLFL 114

Query: 183 WAVTLGAILLG 215
WAVTL ILLG
Sbjct: 115 WAVTLAGILLG 125


>sp|P06183|PSBR_SOLTU Photosystem II 10 kDa polypeptide,
chloroplastic OS=Solanum tuberosum GN=PSBR PE=2 SV=1
Length = 138

Score = 101 bits (251), Expect = 1e-21
Identities = 48/71 (67%), Positives = 51/71 (71%)
Frame = +3

Query: 3 GDTKFKGNLDASGRKAKGKGVYQYTKKYGANVDGYRPIYVPEEWSTSGDSYAAGPTGLAI 182
G + +DASGRK KGKGVYQY KYGANVDGY PIY +EWS SGD Y G TGLAI
Sbjct: 55 GSMALRDGVDASGRKPKGKGVYQYVDKYGANVDGYSPIYNTDEWSPSGDVYVGGTTGLAI 114

Query: 183 WAVTLGAILLG 215
WAVTL IL G
Sbjct: 115 WAVTLVGILAG 125


>sp|Q40163|PSBR_SOLLC Photosystem II 10 kDa polypeptide,
chloroplastic OS=Solanum lycopersicum GN=PSBR PE=2 SV=1
Length = 138

Score = 100 bits (250), Expect = 2e-21
Identities = 48/71 (67%), Positives = 51/71 (71%)
Frame = +3

Query: 3 GDTKFKGNLDASGRKAKGKGVYQYTKKYGANVDGYRPIYVPEEWSTSGDSYAAGPTGLAI 182
G + +DASGRK KGKGVYQY KYGANVDGY PIY +EWS SGD Y G TGLAI
Sbjct: 55 GSMALRDGVDASGRKPKGKGVYQYVDKYGANVDGYSPIYNTDEWSPSGDVYVGGTTGLAI 114

Query: 183 WAVTLGAILLG 215
WAVTL IL G
Sbjct: 115 WAVTLLGILAG 125


>sp|Q40519|PSBR_TOBAC Photosystem II 10 kDa polypeptide,
chloroplastic OS=Nicotiana tabacum GN=PSBR PE=2 SV=1
Length = 136

Score = 99.0 bits (245), Expect = 6e-21
Identities = 46/71 (64%), Positives = 51/71 (71%)
Frame = +3

Query: 3 GDTKFKGNLDASGRKAKGKGVYQYTKKYGANVDGYRPIYVPEEWSTSGDSYAAGPTGLAI 182
G + +DASGRK KGKGVYQ+ KYGANVDGY PIY ++WS SGD Y G TGLAI
Sbjct: 53 GSMSLRDGVDASGRKQKGKGVYQFVDKYGANVDGYSPIYNTDDWSPSGDVYVGGTTGLAI 112

Query: 183 WAVTLGAILLG 215
WAVTL IL G
Sbjct: 113 WAVTLVGILAG 123


>sp|P27202|PSBR_ARATH Photosystem II 10 kDa polypeptide,
chloroplastic OS=Arabidopsis thaliana GN=PSBR PE=1 SV=1
Length = 140

Score = 97.4 bits (241), Expect = 2e-20
Identities = 46/71 (64%), Positives = 49/71 (69%)
Frame = +3

Query: 3 GDTKFKGNLDASGRKAKGKGVYQYTKKYGANVDGYRPIYVPEEWSTSGDSYAAGPTGLAI 182
G + +DASGRK KG GVY+Y KYGANVDGY PIY EWS SGD Y G TGLAI
Sbjct: 57 GSMDLRDGVDASGRKGKGYGVYKYVDKYGANVDGYSPIYNENEWSASGDVYKGGVTGLAI 116

Query: 183 WAVTLGAILLG 215
WAVTL IL G
Sbjct: 117 WAVTLAGILAG 127


>sp|P10690|PSBR_SPIOL Photosystem II 10 kDa polypeptide,
chloroplastic OS=Spinacia oleracea GN=PSBR PE=2 SV=1
Length = 140

Score = 97.1 bits (240), Expect = 2e-20
Identities = 44/71 (61%), Positives = 51/71 (71%)
Frame = +3

Query: 3 GDTKFKGNLDASGRKAKGKGVYQYTKKYGANVDGYRPIYVPEEWSTSGDSYAAGPTGLAI 182
G K + +D+SGRK GKGVYQ+ KYGANVDGY PIY EEW+ +GD YA G TGL I
Sbjct: 57 GGMKLRDGVDSSGRKPTGKGVYQFVDKYGANVDGYSPIYNEEEWAPTGDVYAGGTTGLLI 116

Query: 183 WAVTLGAILLG 215
WAVTL +L G
Sbjct: 117 WAVTLAGLLAG 127


>sp|P49108|PSBR_BRACM Photosystem II 10 kDa polypeptide,
chloroplastic OS=Brassica campestris GN=PSBR PE=2 SV=1
Length = 141

Score = 96.7 bits (239), Expect = 3e-20
Identities = 45/71 (63%), Positives = 50/71 (70%)
Frame = +3

Query: 3 GDTKFKGNLDASGRKAKGKGVYQYTKKYGANVDGYRPIYVPEEWSTSGDSYAAGPTGLAI 182
G + +DASGRK KG GVY++ KYGANVDGY PIY +EWS SGD Y G TGLAI
Sbjct: 58 GSMDLRDGVDASGRKGKGYGVYKFVDKYGANVDGYSPIYNEDEWSASGDVYKGGVTGLAI 117

Query: 183 WAVTLGAILLG 215
WAVTL IL G
Sbjct: 118 WAVTLAGILAG 128


>sp|Q9Z1J1|TF7L1_MOUSE Transcription factor 7-like 1 OS=Mus musculus
GN=Tcf7l1 PE=1 SV=2
Length = 584

Score = 29.6 bits (65), Expect = 4.8
Identities = 13/32 (40%), Positives = 19/32 (59%)
Frame = -3

Query: 175 NPVGPAA*LSPEVDHSSGT*IGLYPSTLAPYF 80
+P P LSPE+D +G +PS L+PY+
Sbjct: 200 SPASPPTHLSPEIDPKTGIPRPPHPSELSPYY 231


>sp|P75475|ARCA_MYCPN Putative arginine deiminase OS=Mycoplasma
pneumoniae GN=arcA PE=3 SV=2
Length = 404

Score = 28.9 bits (63), Expect = 8.2
Identities = 20/55 (36%), Positives = 27/55 (49%), Gaps = 8/55 (14%)
Frame = +1

Query: 37 LVAKLREREST--------NIPRSMVLMSMDTGLSMSQRNGQLLVIAMLQVLLDW 177
L K+++ ST N+P+ LM +DT L+M RN L ML VL W
Sbjct: 239 LAKKIQQDSSTSFKRIFVINVPQLPNLMHLDTWLTMLDRNKFLYSPNMLAVLKAW 293


>sp|Q920F3|KHDR2_RAT KH domain-containing, RNA-binding, signal
transduction-associated protein 2 OS=Rattus norvegicus
GN=Khdrbs2 PE=1 SV=1
Length = 349

Score = 28.9 bits (63), Expect = 8.2
Identities = 14/32 (43%), Positives = 17/32 (53%)
Frame = +3

Query: 72 YTKKYGANVDGYRPIYVPEEWSTSGDSYAAGP 167
Y +G N D Y Y PEEW+T+ S A P
Sbjct: 303 YDYGHGVNEDAYDS-YAPEEWTTTRSSLKAPP 333


tr_hit_id B5X5G7
Definition tr|B5X5G7|B5X5G7_SALSA Photosystem II 10 kDa polypeptide, chloroplast OS=Salmo salar
Align length 71
Score (bit) 107.0
E-value 2.0e-22
Report
BLASTX 2.2.19 [Nov-02-2008]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.

Query= BP918480|Adiantum capillus-veneris mRNA, clone:
YMU001_000114_A05.
(222 letters)

Database: uniprot_trembl.fasta
7,341,751 sequences; 2,391,615,440 total letters

Searching..................................................done



Score E
Sequences producing significant alignments: (bits) Value

tr|B5X5G7|B5X5G7_SALSA Photosystem II 10 kDa polypeptide, chloro... 107 2e-22
tr|A5AWT3|A5AWT3_VITVI Putative uncharacterized protein (Chromos... 104 2e-21
tr|A4ZGB4|A4ZGB4_AGATE Chloroplast photosystem II 10 kDa protein... 104 2e-21
tr|Q8H4P7|Q8H4P7_ORYSJ Os07g0147500 protein OS=Oryza sativa subs... 103 6e-21
tr|B8B7A9|B8B7A9_ORYSI Putative uncharacterized protein OS=Oryza... 103 6e-21
tr|A9PIM0|A9PIM0_POPJC Putative uncharacterized protein OS=Popul... 103 6e-21
tr|A9PHU8|A9PHU8_POPTR Putative uncharacterized protein OS=Popul... 102 1e-20
tr|A9PJW8|A9PJW8_POPJC Putative uncharacterized protein OS=Popul... 102 1e-20
tr|A9PH94|A9PH94_POPTR Putative uncharacterized protein OS=Popul... 102 1e-20
tr|A9PAP8|A9PAP8_POPTR Putative uncharacterized protein OS=Popul... 102 1e-20
tr|Q6ZF71|Q6ZF71_ORYSJ Putative Photosystem II 10 kDa polypeptid... 101 2e-20
tr|B8B7B0|B8B7B0_ORYSI Putative uncharacterized protein OS=Oryza... 101 2e-20
tr|A9S7M9|A9S7M9_PHYPA Predicted protein OS=Physcomitrella paten... 101 2e-20
tr|A3BGK2|A3BGK2_ORYSJ Putative uncharacterized protein OS=Oryza... 101 2e-20
tr|Q6V7X5|Q6V7X5_TRIPR 10 kDa photosystem II polypeptide OS=Trif... 100 3e-20
tr|A9NK29|A9NK29_PICSI Putative uncharacterized protein OS=Picea... 100 4e-20
tr|Q8GV53|Q8GV53_9LILI Photosystem II 10 kDa protein OS=Xerophyt... 100 5e-20
tr|Q6ZBV1|Q6ZBV1_ORYSJ Os08g0200300 protein OS=Oryza sativa subs... 99 1e-19
tr|P93443|P93443_ORYSA Photosystem II 10 kDa polypeptide OS=Oryz... 99 1e-19
tr|A6MZV5|A6MZV5_ORYSI Photosystem ii 10 kDa polypeptide (Fragme... 99 1e-19
tr|A3BQJ5|A3BQJ5_ORYSJ Putative uncharacterized protein OS=Oryza... 99 1e-19
tr|A2YS77|A2YS77_ORYSI Putative uncharacterized protein OS=Oryza... 99 1e-19
tr|A0S601|A0S601_9POAL PS II 10 kDa protein OS=Phyllostachys edu... 99 1e-19
tr|B2BJH0|B2BJH0_OLEEU Photosystem II 10 kDa polypeptide (Fragme... 99 1e-19
tr|Q84XP6|Q84XP6_BRARP Photosystem II 10kDa polypeptide (Fragmen... 98 2e-19
tr|Q2PXN6|Q2PXN6_ARAHY Chloroplast photosystem II 10 kDa protein... 98 2e-19
tr|A1YN01|A1YN01_BRACM Photosystem II 10kDa polytpeptide OS=Bras... 98 2e-19
tr|Q0WWI7|Q0WWI7_ARATH PSII-R protein OS=Arabidopsis thaliana GN... 97 3e-19
tr|A9S1D9|A9S1D9_PHYPA Predicted protein OS=Physcomitrella paten... 97 4e-19
tr|A9RLG5|A9RLG5_PHYPA Predicted protein OS=Physcomitrella paten... 97 4e-19

>tr|B5X5G7|B5X5G7_SALSA Photosystem II 10 kDa polypeptide,
chloroplast OS=Salmo salar GN=PSBR PE=2 SV=1
Length = 138

Score = 107 bits (268), Expect = 2e-22
Identities = 50/71 (70%), Positives = 52/71 (73%)
Frame = +3

Query: 3 GDTKFKGNLDASGRKAKGKGVYQYTKKYGANVDGYRPIYVPEEWSTSGDSYAAGPTGLAI 182
G FK LDASGR AKGKGVYQ+ KYGANVDGY PIY PEEWS GD Y G TGL +
Sbjct: 55 GGVDFKDGLDASGRVAKGKGVYQFANKYGANVDGYSPIYTPEEWSPGGDVYVGGKTGLFL 114

Query: 183 WAVTLGAILLG 215
WAVTL ILLG
Sbjct: 115 WAVTLAGILLG 125


>tr|A5AWT3|A5AWT3_VITVI Putative uncharacterized protein (Chromosome
chr19 scaffold_35, whole genome shotgun sequence)
OS=Vitis vinifera GN=GSVIVT00025803001 PE=4 SV=1
Length = 139

Score = 104 bits (260), Expect = 2e-21
Identities = 48/71 (67%), Positives = 51/71 (71%)
Frame = +3

Query: 3 GDTKFKGNLDASGRKAKGKGVYQYTKKYGANVDGYRPIYVPEEWSTSGDSYAAGPTGLAI 182
G K LDASGRK KGKGVYQ+ KYGANVDGY PIY P+EWS GD Y G TGL I
Sbjct: 56 GGMKLSDGLDASGRKGKGKGVYQFVDKYGANVDGYSPIYSPDEWSPGGDVYVGGTTGLLI 115

Query: 183 WAVTLGAILLG 215
WAVTL +LLG
Sbjct: 116 WAVTLAGLLLG 126


>tr|A4ZGB4|A4ZGB4_AGATE Chloroplast photosystem II 10 kDa protein
OS=Agave tequilana PE=2 SV=1
Length = 144

Score = 104 bits (260), Expect = 2e-21
Identities = 48/71 (67%), Positives = 51/71 (71%)
Frame = +3

Query: 3 GDTKFKGNLDASGRKAKGKGVYQYTKKYGANVDGYRPIYVPEEWSTSGDSYAAGPTGLAI 182
G K DASGRKAKGKGVYQ+ KYGANVDGY PIY PEEWS SGD Y G TGL I
Sbjct: 61 GGLSLKDGADASGRKAKGKGVYQFVDKYGANVDGYSPIYSPEEWSPSGDVYVGGTTGLLI 120

Query: 183 WAVTLGAILLG 215
WA+TL +L G
Sbjct: 121 WAITLAGLLAG 131


>tr|Q8H4P7|Q8H4P7_ORYSJ Os07g0147500 protein OS=Oryza sativa subsp.
japonica GN=OJ1470_H06.117 PE=2 SV=1
Length = 137

Score = 103 bits (256), Expect = 6e-21
Identities = 45/71 (63%), Positives = 54/71 (76%)
Frame = +3

Query: 3 GDTKFKGNLDASGRKAKGKGVYQYTKKYGANVDGYRPIYVPEEWSTSGDSYAAGPTGLAI 182
G FK +DASGR AKGKG+YQ++ KYGANVDGY PIY PEEWS++GD Y G GL +
Sbjct: 55 GGVVFKEGVDASGRVAKGKGLYQFSNKYGANVDGYSPIYTPEEWSSTGDVYVGGKAGLLL 114

Query: 183 WAVTLGAILLG 215
WA+TL IL+G
Sbjct: 115 WAITLAGILVG 125


>tr|B8B7A9|B8B7A9_ORYSI Putative uncharacterized protein OS=Oryza
sativa subsp. indica GN=OsI_24891 PE=4 SV=1
Length = 137

Score = 103 bits (256), Expect = 6e-21
Identities = 45/71 (63%), Positives = 54/71 (76%)
Frame = +3

Query: 3 GDTKFKGNLDASGRKAKGKGVYQYTKKYGANVDGYRPIYVPEEWSTSGDSYAAGPTGLAI 182
G FK +DASGR AKGKG+YQ++ KYGANVDGY PIY PEEWS++GD Y G GL +
Sbjct: 55 GGVVFKEGVDASGRVAKGKGLYQFSNKYGANVDGYSPIYTPEEWSSTGDVYVGGKAGLLL 114

Query: 183 WAVTLGAILLG 215
WA+TL IL+G
Sbjct: 115 WAITLAGILVG 125


>tr|A9PIM0|A9PIM0_POPJC Putative uncharacterized protein OS=Populus
jackii PE=2 SV=1
Length = 137

Score = 103 bits (256), Expect = 6e-21
Identities = 49/71 (69%), Positives = 51/71 (71%)
Frame = +3

Query: 3 GDTKFKGNLDASGRKAKGKGVYQYTKKYGANVDGYRPIYVPEEWSTSGDSYAAGPTGLAI 182
G + LDASGRK KGKGVYQY KYGANVDGY PIY +EWS SGD YA G TGL I
Sbjct: 54 GGMNLRDGLDASGRKPKGKGVYQYVDKYGANVDGYSPIYNTDEWSPSGDVYAGGKTGLLI 113

Query: 183 WAVTLGAILLG 215
WAVTL IL G
Sbjct: 114 WAVTLAGILAG 124


>tr|A9PHU8|A9PHU8_POPTR Putative uncharacterized protein OS=Populus
trichocarpa PE=2 SV=1
Length = 137

Score = 102 bits (254), Expect = 1e-20
Identities = 48/71 (67%), Positives = 51/71 (71%)
Frame = +3

Query: 3 GDTKFKGNLDASGRKAKGKGVYQYTKKYGANVDGYRPIYVPEEWSTSGDSYAAGPTGLAI 182
G + LDASGRK +GKGVYQY KYGANVDGY PIY +EWS SGD YA G TGL I
Sbjct: 54 GGMNLRNGLDASGRKPRGKGVYQYVDKYGANVDGYSPIYNADEWSPSGDVYAGGKTGLLI 113

Query: 183 WAVTLGAILLG 215
WAVTL IL G
Sbjct: 114 WAVTLAGILAG 124


>tr|A9PJW8|A9PJW8_POPJC Putative uncharacterized protein OS=Populus
jackii PE=2 SV=1
Length = 136

Score = 102 bits (253), Expect = 1e-20
Identities = 48/71 (67%), Positives = 51/71 (71%)
Frame = +3

Query: 3 GDTKFKGNLDASGRKAKGKGVYQYTKKYGANVDGYRPIYVPEEWSTSGDSYAAGPTGLAI 182
G + LDASGRK KGKGVYQY KYGANVDGY PIY +EWS +GD YA G TGL I
Sbjct: 53 GGMNLRDGLDASGRKPKGKGVYQYVDKYGANVDGYSPIYNTDEWSPTGDVYAGGKTGLLI 112

Query: 183 WAVTLGAILLG 215
WAVTL IL G
Sbjct: 113 WAVTLAGILAG 123


>tr|A9PH94|A9PH94_POPTR Putative uncharacterized protein OS=Populus
trichocarpa PE=2 SV=1
Length = 137

Score = 102 bits (253), Expect = 1e-20
Identities = 48/71 (67%), Positives = 51/71 (71%)
Frame = +3

Query: 3 GDTKFKGNLDASGRKAKGKGVYQYTKKYGANVDGYRPIYVPEEWSTSGDSYAAGPTGLAI 182
G + LDASGRK KGKGVYQY KYGANVDGY PIY +EWS +GD YA G TGL I
Sbjct: 54 GGMNLRDGLDASGRKPKGKGVYQYVDKYGANVDGYSPIYNTDEWSPTGDVYAGGKTGLLI 113

Query: 183 WAVTLGAILLG 215
WAVTL IL G
Sbjct: 114 WAVTLAGILAG 124


>tr|A9PAP8|A9PAP8_POPTR Putative uncharacterized protein OS=Populus
trichocarpa PE=2 SV=1
Length = 137

Score = 102 bits (253), Expect = 1e-20
Identities = 46/71 (64%), Positives = 52/71 (73%)
Frame = +3

Query: 3 GDTKFKGNLDASGRKAKGKGVYQYTKKYGANVDGYRPIYVPEEWSTSGDSYAAGPTGLAI 182
G +G LDASGRK KGKGVYQ+ KYGANVDGY PIY P++WS SG+ Y G TGL I
Sbjct: 54 GGMDLRGGLDASGRKGKGKGVYQFVDKYGANVDGYSPIYDPKDWSPSGEVYVGGTTGLLI 113

Query: 183 WAVTLGAILLG 215
WAVTL +L G
Sbjct: 114 WAVTLAGLLAG 124