BP918480 |
Clone id |
YMU001_000114_A05 |
Library |
YMU01 |
Length |
222 |
Definition |
Adiantum capillus-veneris mRNA. clone: YMU001_000114_A05. |
Accession |
BP918480 |
Tissue type |
prothallium |
Developmental stage |
- |
Contig ID |
CL6Contig1 |
Sequence |
CCGGCGATACCAAATTCAAGGGTAACCTGGATGCCTCTGGTCGCAAAGCTAAGGGAAAGG GAGTCTACCAATATACCAAGAAGTATGGTGCTAATGTCGATGGATACAGGCCTATCTATG TCCCAGAGGAATGGTCAACTTCTGGTGATAGCTATGCTGCAGGTCCTACTGGATTGGCTA TCTGGGCAGTTACCCTCGGCGCTATCTTGTTGGGTGAGTACC |
■■Homology search results ■■ |
- |
Swiss-Prot (release 56.9) |
Link to BlastX Result : Swiss-Prot |
sp_hit_id |
Q40070 |
Definition |
sp|Q40070|PSBR_HORVU Photosystem II 10 kDa polypeptide, chloroplastic OS=Hordeum vulgare |
Align length |
71 |
Score (bit) |
107.0 |
E-value |
2.0e-23 |
Report |
BLASTX 2.2.19 [Nov-02-2008]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402.
Query= BP918480|Adiantum capillus-veneris mRNA, clone: YMU001_000114_A05. (222 letters)
Database: uniprot_sprot.fasta 412,525 sequences; 148,809,765 total letters
Searching..................................................done
Score E Sequences producing significant alignments: (bits) Value
sp|Q40070|PSBR_HORVU Photosystem II 10 kDa polypeptide, chloropl... 107 2e-23 sp|P06183|PSBR_SOLTU Photosystem II 10 kDa polypeptide, chloropl... 101 1e-21 sp|Q40163|PSBR_SOLLC Photosystem II 10 kDa polypeptide, chloropl... 100 2e-21 sp|Q40519|PSBR_TOBAC Photosystem II 10 kDa polypeptide, chloropl... 99 6e-21 sp|P27202|PSBR_ARATH Photosystem II 10 kDa polypeptide, chloropl... 97 2e-20 sp|P10690|PSBR_SPIOL Photosystem II 10 kDa polypeptide, chloropl... 97 2e-20 sp|P49108|PSBR_BRACM Photosystem II 10 kDa polypeptide, chloropl... 97 3e-20 sp|Q9Z1J1|TF7L1_MOUSE Transcription factor 7-like 1 OS=Mus muscu... 30 4.8 sp|P75475|ARCA_MYCPN Putative arginine deiminase OS=Mycoplasma p... 29 8.2 sp|Q920F3|KHDR2_RAT KH domain-containing, RNA-binding, signal tr... 29 8.2 sp|Q9WU01|KHDR2_MOUSE KH domain-containing, RNA-binding, signal ... 29 8.2
>sp|Q40070|PSBR_HORVU Photosystem II 10 kDa polypeptide, chloroplastic OS=Hordeum vulgare GN=PSBR PE=3 SV=1 Length = 138
Score = 107 bits (267), Expect = 2e-23 Identities = 50/71 (70%), Positives = 53/71 (74%) Frame = +3
Query: 3 GDTKFKGNLDASGRKAKGKGVYQYTKKYGANVDGYRPIYVPEEWSTSGDSYAAGPTGLAI 182 G FK +DASGR AKGKGVYQ+ KYGANVDGY PIY PEEWS SGD Y G TGL + Sbjct: 55 GGVAFKEGVDASGRVAKGKGVYQFADKYGANVDGYSPIYTPEEWSPSGDVYVGGKTGLFL 114
Query: 183 WAVTLGAILLG 215 WAVTL ILLG Sbjct: 115 WAVTLAGILLG 125
>sp|P06183|PSBR_SOLTU Photosystem II 10 kDa polypeptide, chloroplastic OS=Solanum tuberosum GN=PSBR PE=2 SV=1 Length = 138
Score = 101 bits (251), Expect = 1e-21 Identities = 48/71 (67%), Positives = 51/71 (71%) Frame = +3
Query: 3 GDTKFKGNLDASGRKAKGKGVYQYTKKYGANVDGYRPIYVPEEWSTSGDSYAAGPTGLAI 182 G + +DASGRK KGKGVYQY KYGANVDGY PIY +EWS SGD Y G TGLAI Sbjct: 55 GSMALRDGVDASGRKPKGKGVYQYVDKYGANVDGYSPIYNTDEWSPSGDVYVGGTTGLAI 114
Query: 183 WAVTLGAILLG 215 WAVTL IL G Sbjct: 115 WAVTLVGILAG 125
>sp|Q40163|PSBR_SOLLC Photosystem II 10 kDa polypeptide, chloroplastic OS=Solanum lycopersicum GN=PSBR PE=2 SV=1 Length = 138
Score = 100 bits (250), Expect = 2e-21 Identities = 48/71 (67%), Positives = 51/71 (71%) Frame = +3
Query: 3 GDTKFKGNLDASGRKAKGKGVYQYTKKYGANVDGYRPIYVPEEWSTSGDSYAAGPTGLAI 182 G + +DASGRK KGKGVYQY KYGANVDGY PIY +EWS SGD Y G TGLAI Sbjct: 55 GSMALRDGVDASGRKPKGKGVYQYVDKYGANVDGYSPIYNTDEWSPSGDVYVGGTTGLAI 114
Query: 183 WAVTLGAILLG 215 WAVTL IL G Sbjct: 115 WAVTLLGILAG 125
>sp|Q40519|PSBR_TOBAC Photosystem II 10 kDa polypeptide, chloroplastic OS=Nicotiana tabacum GN=PSBR PE=2 SV=1 Length = 136
Score = 99.0 bits (245), Expect = 6e-21 Identities = 46/71 (64%), Positives = 51/71 (71%) Frame = +3
Query: 3 GDTKFKGNLDASGRKAKGKGVYQYTKKYGANVDGYRPIYVPEEWSTSGDSYAAGPTGLAI 182 G + +DASGRK KGKGVYQ+ KYGANVDGY PIY ++WS SGD Y G TGLAI Sbjct: 53 GSMSLRDGVDASGRKQKGKGVYQFVDKYGANVDGYSPIYNTDDWSPSGDVYVGGTTGLAI 112
Query: 183 WAVTLGAILLG 215 WAVTL IL G Sbjct: 113 WAVTLVGILAG 123
>sp|P27202|PSBR_ARATH Photosystem II 10 kDa polypeptide, chloroplastic OS=Arabidopsis thaliana GN=PSBR PE=1 SV=1 Length = 140
Score = 97.4 bits (241), Expect = 2e-20 Identities = 46/71 (64%), Positives = 49/71 (69%) Frame = +3
Query: 3 GDTKFKGNLDASGRKAKGKGVYQYTKKYGANVDGYRPIYVPEEWSTSGDSYAAGPTGLAI 182 G + +DASGRK KG GVY+Y KYGANVDGY PIY EWS SGD Y G TGLAI Sbjct: 57 GSMDLRDGVDASGRKGKGYGVYKYVDKYGANVDGYSPIYNENEWSASGDVYKGGVTGLAI 116
Query: 183 WAVTLGAILLG 215 WAVTL IL G Sbjct: 117 WAVTLAGILAG 127
>sp|P10690|PSBR_SPIOL Photosystem II 10 kDa polypeptide, chloroplastic OS=Spinacia oleracea GN=PSBR PE=2 SV=1 Length = 140
Score = 97.1 bits (240), Expect = 2e-20 Identities = 44/71 (61%), Positives = 51/71 (71%) Frame = +3
Query: 3 GDTKFKGNLDASGRKAKGKGVYQYTKKYGANVDGYRPIYVPEEWSTSGDSYAAGPTGLAI 182 G K + +D+SGRK GKGVYQ+ KYGANVDGY PIY EEW+ +GD YA G TGL I Sbjct: 57 GGMKLRDGVDSSGRKPTGKGVYQFVDKYGANVDGYSPIYNEEEWAPTGDVYAGGTTGLLI 116
Query: 183 WAVTLGAILLG 215 WAVTL +L G Sbjct: 117 WAVTLAGLLAG 127
>sp|P49108|PSBR_BRACM Photosystem II 10 kDa polypeptide, chloroplastic OS=Brassica campestris GN=PSBR PE=2 SV=1 Length = 141
Score = 96.7 bits (239), Expect = 3e-20 Identities = 45/71 (63%), Positives = 50/71 (70%) Frame = +3
Query: 3 GDTKFKGNLDASGRKAKGKGVYQYTKKYGANVDGYRPIYVPEEWSTSGDSYAAGPTGLAI 182 G + +DASGRK KG GVY++ KYGANVDGY PIY +EWS SGD Y G TGLAI Sbjct: 58 GSMDLRDGVDASGRKGKGYGVYKFVDKYGANVDGYSPIYNEDEWSASGDVYKGGVTGLAI 117
Query: 183 WAVTLGAILLG 215 WAVTL IL G Sbjct: 118 WAVTLAGILAG 128
>sp|Q9Z1J1|TF7L1_MOUSE Transcription factor 7-like 1 OS=Mus musculus GN=Tcf7l1 PE=1 SV=2 Length = 584
Score = 29.6 bits (65), Expect = 4.8 Identities = 13/32 (40%), Positives = 19/32 (59%) Frame = -3
Query: 175 NPVGPAA*LSPEVDHSSGT*IGLYPSTLAPYF 80 +P P LSPE+D +G +PS L+PY+ Sbjct: 200 SPASPPTHLSPEIDPKTGIPRPPHPSELSPYY 231
>sp|P75475|ARCA_MYCPN Putative arginine deiminase OS=Mycoplasma pneumoniae GN=arcA PE=3 SV=2 Length = 404
Score = 28.9 bits (63), Expect = 8.2 Identities = 20/55 (36%), Positives = 27/55 (49%), Gaps = 8/55 (14%) Frame = +1
Query: 37 LVAKLREREST--------NIPRSMVLMSMDTGLSMSQRNGQLLVIAMLQVLLDW 177 L K+++ ST N+P+ LM +DT L+M RN L ML VL W Sbjct: 239 LAKKIQQDSSTSFKRIFVINVPQLPNLMHLDTWLTMLDRNKFLYSPNMLAVLKAW 293
>sp|Q920F3|KHDR2_RAT KH domain-containing, RNA-binding, signal transduction-associated protein 2 OS=Rattus norvegicus GN=Khdrbs2 PE=1 SV=1 Length = 349
Score = 28.9 bits (63), Expect = 8.2 Identities = 14/32 (43%), Positives = 17/32 (53%) Frame = +3
Query: 72 YTKKYGANVDGYRPIYVPEEWSTSGDSYAAGP 167 Y +G N D Y Y PEEW+T+ S A P Sbjct: 303 YDYGHGVNEDAYDS-YAPEEWTTTRSSLKAPP 333
|
TrEMBL (release 39.9) |
Link to BlastX Result : TrEMBL |
tr_hit_id |
B5X5G7 |
Definition |
tr|B5X5G7|B5X5G7_SALSA Photosystem II 10 kDa polypeptide, chloroplast OS=Salmo salar |
Align length |
71 |
Score (bit) |
107.0 |
E-value |
2.0e-22 |
Report |
|