BP918492 |
Clone id |
YMU001_000114_B05 |
Library |
YMU01 |
Length |
522 |
Definition |
Adiantum capillus-veneris mRNA. clone: YMU001_000114_B05. |
Accession |
BP918492 |
Tissue type |
prothallium |
Developmental stage |
- |
Contig ID |
CL595Contig1 |
Sequence |
CCCCACATTGTATCATCTGGCCCACAAACACGCTTGCGCTTGGATCCGACTTCCTCTTTC GAAATTTCCTCTTTGTTAGAGGCTTGGGAGAAATCTTCTAGTTCATTAGCCTTTTCCTTC GCAAGCTCAATGACACTTTCAGGAAAATGAGCAAACTCAGCTACATGTATACCAAAGCTT TGATCACAGGCCCCCTCCTCAACCTTATATAGCATAGTAAGCTTCCGCGAAACATCATCC AGATGAGCTTTCATATGATAATTAGCCACCCCAACCGTTGGCTGCCCCAAAGAGTCTTTA TTGCTTTCCAAAGCAGTCAGTTCATGAAAATGAGTTGCAAAAAGTGTTGGTGCTCTGGTT ATCTCTGTAAGGTGTTCACATATGGCCCAAGCCAATCCAAATCCATCATATGTTGACGTG CCCCTCCCTAATTCGTCAATAATTATCAATGACCTGTCAGTCGCCGCTTTTAATATGGCA GCCGTCTCCAACATTTCGGCCTTGAATGTGGATACTCCTCGC |
■■Homology search results ■■ |
- |
Swiss-Prot (release 56.9) |
Link to BlastX Result : Swiss-Prot |
sp_hit_id |
Q9XGC9 |
Definition |
sp|Q9XGC9|MSH2_MAIZE DNA mismatch repair protein MSH2 OS=Zea mays |
Align length |
171 |
Score (bit) |
250.0 |
E-value |
3.0e-66 |
Report |
|
TrEMBL (release 39.9) |
Link to BlastX Result : TrEMBL |
tr_hit_id |
Q0DJI9 |
Definition |
tr|Q0DJI9|Q0DJI9_ORYSJ Os05g0274200 protein OS=Oryza sativa subsp. japonica |
Align length |
172 |
Score (bit) |
258.0 |
E-value |
9.0e-68 |
Report |
BLASTX 2.2.19 [Nov-02-2008]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402.
Query= BP918492|Adiantum capillus-veneris mRNA, clone: YMU001_000114_B05. (522 letters)
Database: uniprot_trembl.fasta 7,341,751 sequences; 2,391,615,440 total letters
Searching..................................................done
Score E Sequences producing significant alignments: (bits) Value
tr|Q0DJI9|Q0DJI9_ORYSJ Os05g0274200 protein OS=Oryza sativa subs... 258 9e-68 tr|B8AW22|B8AW22_ORYSI Putative uncharacterized protein OS=Oryza... 258 9e-68 tr|Q45RT1|Q45RT1_PHYPA DNA mismatch repair protein MSH2 OS=Physc... 257 3e-67 tr|A9TKK7|A9TKK7_PHYPA Predicted protein OS=Physcomitrella paten... 257 3e-67 tr|B8A0F4|B8A0F4_MAIZE Putative uncharacterized protein OS=Zea m... 250 3e-65 tr|Q6DQL7|Q6DQL7_PETHY DNA mismatch repair protein OS=Petunia hy... 231 1e-59 tr|A3B234|A3B234_ORYSJ Putative uncharacterized protein OS=Oryza... 205 1e-51 tr|Q00ZW2|Q00ZW2_OSTTA Mismatch repair ATPase MSH4 (MutS family)... 203 5e-51 tr|A4RQJ8|A4RQJ8_OSTLU Predicted protein OS=Ostreococcus lucimar... 202 8e-51 tr|A4RDT4|A4RDT4_MAGGR DNA mismatch repair protein msh-2 OS=Magn... 177 2e-43 tr|B8PEN7|B8PEN7_9APHY Predicted protein OS=Postia placenta Mad-... 176 5e-43 tr|Q1E676|Q1E676_COCIM Putative uncharacterized protein OS=Cocci... 176 6e-43 tr|A6S313|A6S313_BOTFB Putative uncharacterized protein OS=Botry... 176 8e-43 tr|B2AKZ5|B2AKZ5_PODAN Predicted CDS Pa_5_9410 (Fragment) OS=Pod... 175 1e-42 tr|Q0UFF6|Q0UFF6_PHANO Putative uncharacterized protein OS=Phaeo... 175 1e-42 tr|Q5HZF7|Q5HZF7_XENLA MSH2 protein (Fragment) OS=Xenopus laevis... 174 2e-42 tr|Q5KN74|Q5KN74_CRYNE DNA mismatch repair protein MSH2, putativ... 174 2e-42 tr|B0DLM3|B0DLM3_LACBS Predicted protein (Fragment) OS=Laccaria ... 173 4e-42 tr|Q2GQZ0|Q2GQZ0_CHAGB DNA mismatch repair protein msh-2 OS=Chae... 173 5e-42 tr|A6R749|A6R749_AJECN DNA mismatch repair protein msh-2 OS=Ajel... 172 9e-42 tr|Q90XA7|Q90XA7_DANRE Mismatch repair protein Msh2 OS=Danio rer... 171 2e-41 tr|B8LUR2|B8LUR2_9EURO DNA mismatch repair protein Msh2, putativ... 171 2e-41 tr|Q803R6|Q803R6_DANRE MutS homolog 2 (E. coli) OS=Danio rerio G... 171 2e-41 tr|Q0MR17|Q0MR17_PENMA MSH2-like protein OS=Penicillium marneffe... 171 3e-41 tr|B6Q7H2|B6Q7H2_PENMA DNA mismatch repair protein Msh2, putativ... 171 3e-41 tr|A9VAZ2|A9VAZ2_MONBE Predicted protein OS=Monosiga brevicollis... 170 4e-41 tr|B8PH91|B8PH91_9APHY Predicted protein OS=Postia placenta Mad-... 170 4e-41 tr|A1CK85|A1CK85_ASPCL DNA mismatch repair protein Msh2, putativ... 170 4e-41 tr|Q6FQA9|Q6FQA9_CANGA Strain CBS138 chromosome I complete seque... 169 8e-41 tr|A2R7H2|A2R7H2_ASPNC Complex: heterodimer of MSH2 and MSH6 OS=... 168 1e-40
>tr|Q0DJI9|Q0DJI9_ORYSJ Os05g0274200 protein OS=Oryza sativa subsp. japonica GN=Os05g0274200 PE=3 SV=1 Length = 942
Score = 258 bits (660), Expect = 9e-68 Identities = 130/172 (75%), Positives = 145/172 (84%), Gaps = 2/172 (1%) Frame = -2
Query: 521 RGVSTFKAEMLETAAILKAATDRSLIIIDELGRGTSTYDGFGLAWAICEHLTEITRAPTL 342 RGVSTF EMLETA+ILK A+D+SLIIIDELGRGTSTYDGFGLAWAICEHL E+TRAPTL Sbjct: 718 RGVSTFMQEMLETASILKGASDKSLIIIDELGRGTSTYDGFGLAWAICEHLVEVTRAPTL 777
Query: 341 FATHFHELTAL--ESNKDSLGQPTVGVANYHMKAHLDDVSRKLTMLYKVEEGACDQSFGI 168 FATHFHELTAL +S + P +G+ANYH+ AH+D SRKLTMLYKVE GACDQSFGI Sbjct: 778 FATHFHELTALGHKSGDEHQHVPNLGIANYHVGAHIDPSSRKLTMLYKVEPGACDQSFGI 837
Query: 167 HVAEFAHFPESVIELAKEKANELEDFSQASNKEEISKEEVGSKRKRVCGPDD 12 HVAEFA+FPE+V+ LAK KA ELEDFS A N + SK+EVGSKRKRV PDD Sbjct: 838 HVAEFANFPEAVVALAKSKAEELEDFSTAPNFSDDSKDEVGSKRKRVFSPDD 889
>tr|B8AW22|B8AW22_ORYSI Putative uncharacterized protein OS=Oryza sativa subsp. indica GN=OsI_19262 PE=4 SV=1 Length = 942
Score = 258 bits (660), Expect = 9e-68 Identities = 130/172 (75%), Positives = 145/172 (84%), Gaps = 2/172 (1%) Frame = -2
Query: 521 RGVSTFKAEMLETAAILKAATDRSLIIIDELGRGTSTYDGFGLAWAICEHLTEITRAPTL 342 RGVSTF EMLETA+ILK A+D+SLIIIDELGRGTSTYDGFGLAWAICEHL E+TRAPTL Sbjct: 718 RGVSTFMQEMLETASILKGASDKSLIIIDELGRGTSTYDGFGLAWAICEHLVEVTRAPTL 777
Query: 341 FATHFHELTAL--ESNKDSLGQPTVGVANYHMKAHLDDVSRKLTMLYKVEEGACDQSFGI 168 FATHFHELTAL +S + P +G+ANYH+ AH+D SRKLTMLYKVE GACDQSFGI Sbjct: 778 FATHFHELTALGHKSGDEHQHVPNLGIANYHVGAHIDPSSRKLTMLYKVEPGACDQSFGI 837
Query: 167 HVAEFAHFPESVIELAKEKANELEDFSQASNKEEISKEEVGSKRKRVCGPDD 12 HVAEFA+FPE+V+ LAK KA ELEDFS A N + SK+EVGSKRKRV PDD Sbjct: 838 HVAEFANFPEAVVALAKSKAEELEDFSTAPNFSDDSKDEVGSKRKRVFSPDD 889
>tr|Q45RT1|Q45RT1_PHYPA DNA mismatch repair protein MSH2 OS=Physcomitrella patens PE=3 SV=1 Length = 951
Score = 257 bits (656), Expect = 3e-67 Identities = 132/177 (74%), Positives = 148/177 (83%), Gaps = 7/177 (3%) Frame = -2
Query: 521 RGVSTFKAEMLETAAILKAATDRSLIIIDELGRGTSTYDGFGLAWAICEHLTEITRAPTL 342 RGVSTF AEMLETA+I+K+AT+RSLIIIDELGRGTSTYDGFGLAWAICE+L E+TRAPTL Sbjct: 721 RGVSTFMAEMLETASIIKSATERSLIIIDELGRGTSTYDGFGLAWAICEYLVEVTRAPTL 780
Query: 341 FATHFHELTALE-SNKDSL----GQPTVGVANYHMKAHLDDVSRKLTMLYKVEEGACDQS 177 FATHFHELTALE SN + P VG+ANYH+ AH+D S+KL MLYKVEEG CDQS Sbjct: 781 FATHFHELTALEHSNSPPVHGPPRGPLVGIANYHVSAHIDTKSQKLAMLYKVEEGPCDQS 840
Query: 176 FGIHVAEFAHFPESVIELAKEKANELEDFSQASNKEE--ISKEEVGSKRKRVCGPDD 12 FGIHVAEFAHFPESV+ELAK+KA ELEDFS +SK+EVG+KRKRV GPDD Sbjct: 841 FGIHVAEFAHFPESVVELAKQKAAELEDFSDTGKDVSGGLSKDEVGTKRKRVSGPDD 897
>tr|A9TKK7|A9TKK7_PHYPA Predicted protein OS=Physcomitrella patens subsp. patens GN=PHYPADRAFT_223185 PE=3 SV=1 Length = 956
Score = 257 bits (656), Expect = 3e-67 Identities = 132/177 (74%), Positives = 148/177 (83%), Gaps = 7/177 (3%) Frame = -2
Query: 521 RGVSTFKAEMLETAAILKAATDRSLIIIDELGRGTSTYDGFGLAWAICEHLTEITRAPTL 342 RGVSTF AEMLETA+I+K+AT+RSLIIIDELGRGTSTYDGFGLAWAICE+L E+TRAPTL Sbjct: 726 RGVSTFMAEMLETASIIKSATERSLIIIDELGRGTSTYDGFGLAWAICEYLVEVTRAPTL 785
Query: 341 FATHFHELTALE-SNKDSL----GQPTVGVANYHMKAHLDDVSRKLTMLYKVEEGACDQS 177 FATHFHELTALE SN + P VG+ANYH+ AH+D S+KL MLYKVEEG CDQS Sbjct: 786 FATHFHELTALEHSNSPPVHGPPRGPLVGIANYHVSAHIDTKSQKLAMLYKVEEGPCDQS 845
Query: 176 FGIHVAEFAHFPESVIELAKEKANELEDFSQASNKEE--ISKEEVGSKRKRVCGPDD 12 FGIHVAEFAHFPESV+ELAK+KA ELEDFS +SK+EVG+KRKRV GPDD Sbjct: 846 FGIHVAEFAHFPESVVELAKQKAAELEDFSDTGKDVSGGLSKDEVGTKRKRVSGPDD 902
>tr|B8A0F4|B8A0F4_MAIZE Putative uncharacterized protein OS=Zea mays PE=2 SV=1 Length = 618
Score = 250 bits (638), Expect = 3e-65 Identities = 127/171 (74%), Positives = 140/171 (81%), Gaps = 2/171 (1%) Frame = -2
Query: 518 GVSTFKAEMLETAAILKAATDRSLIIIDELGRGTSTYDGFGLAWAICEHLTEITRAPTLF 339 GVSTF EMLETA+ILK A+D+SLIIIDELGRGTSTYDGFGLAWAICEHL E+TRAPTLF Sbjct: 395 GVSTFMQEMLETASILKGASDKSLIIIDELGRGTSTYDGFGLAWAICEHLMEVTRAPTLF 454
Query: 338 ATHFHELTALESNKDSLGQ--PTVGVANYHMKAHLDDVSRKLTMLYKVEEGACDQSFGIH 165 ATHFHELTAL D Q +GVANYH+ AH+D +SRKLTMLYKVE GACDQSFGIH Sbjct: 455 ATHFHELTALAHRNDDEHQHISDIGVANYHVGAHIDPLSRKLTMLYKVEPGACDQSFGIH 514
Query: 164 VAEFAHFPESVIELAKEKANELEDFSQASNKEEISKEEVGSKRKRVCGPDD 12 VAEFA+FPE+V+ LAK KA ELEDFS + K+EVGSKRKRV PDD Sbjct: 515 VAEFANFPEAVVALAKSKAAELEDFSTTPTFSDDLKDEVGSKRKRVFSPDD 565
>tr|Q6DQL7|Q6DQL7_PETHY DNA mismatch repair protein OS=Petunia hybrida GN=MSH2 PE=2 SV=1 Length = 942
Score = 231 bits (590), Expect = 1e-59 Identities = 119/171 (69%), Positives = 139/171 (81%), Gaps = 1/171 (0%) Frame = -2
Query: 521 RGVSTFKAEMLETAAILKAATDRSLIIIDELGRGTSTYDGFGLAWAICEHLTEITRAPTL 342 RGVSTF EMLETA+ILK ATD+SLIIIDELGRGTSTYDGFGLAWAICEH+ E+ +APTL Sbjct: 717 RGVSTFMQEMLETASILKGATDKSLIIIDELGRGTSTYDGFGLAWAICEHIVEVIKAPTL 776
Query: 341 FATHFHELTAL-ESNKDSLGQPTVGVANYHMKAHLDDVSRKLTMLYKVEEGACDQSFGIH 165 FATHFHELTAL +N D+ + GVAN+H+ AH+D SRKLTMLYKV+ GACDQSFGIH Sbjct: 777 FATHFHELTALANANGDNGHKQIAGVANFHVSAHIDASSRKLTMLYKVQPGACDQSFGIH 836
Query: 164 VAEFAHFPESVIELAKEKANELEDFSQASNKEEISKEEVGSKRKRVCGPDD 12 VAEFA+FP SV++LA+EKA+ELEDFS + E+ SKRKR P+D Sbjct: 837 VAEFANFPRSVVDLAREKASELEDFSPNAMILN-DGEKAASKRKRNFDPND 886
>tr|A3B234|A3B234_ORYSJ Putative uncharacterized protein OS=Oryza sativa subsp. japonica GN=OsJ_017106 PE=3 SV=1 Length = 905
Score = 205 bits (522), Expect = 1e-51 Identities = 110/172 (63%), Positives = 123/172 (71%), Gaps = 2/172 (1%) Frame = -2
Query: 521 RGVSTFKAEMLETAAILKAATDRSLIIIDELGRGTSTYDGFGLAWAICEHLTEITRAPTL 342 RGVSTF EMLETA+ILK GLAWAICEHL E+TRAPTL Sbjct: 704 RGVSTFMQEMLETASILK-----------------------GLAWAICEHLVEVTRAPTL 740
Query: 341 FATHFHELTAL--ESNKDSLGQPTVGVANYHMKAHLDDVSRKLTMLYKVEEGACDQSFGI 168 FATHFHELTAL +S + P +G+ANYH+ AH+D SRKLTMLYKVE GACDQSFGI Sbjct: 741 FATHFHELTALGHKSGDEHQHVPNLGIANYHVGAHIDPSSRKLTMLYKVEPGACDQSFGI 800
Query: 167 HVAEFAHFPESVIELAKEKANELEDFSQASNKEEISKEEVGSKRKRVCGPDD 12 HVAEFA+FPE+V+ LAK KA ELEDFS A N + SK+EVGSKRKRV PDD Sbjct: 801 HVAEFANFPEAVVALAKSKAEELEDFSTAPNFSDDSKDEVGSKRKRVFSPDD 852
>tr|Q00ZW2|Q00ZW2_OSTTA Mismatch repair ATPase MSH4 (MutS family) (ISS) OS=Ostreococcus tauri GN=Ot10g02130 PE=3 SV=1 Length = 913
Score = 203 bits (516), Expect = 5e-51 Identities = 103/165 (62%), Positives = 127/165 (76%), Gaps = 1/165 (0%) Frame = -2
Query: 521 RGVSTFKAEMLETAAILKAATDRSLIIIDELGRGTSTYDGFGLAWAICEHLTEITRAPTL 342 RG+STF AEMLETAAILKAAT SL+IIDELGRGTSTYDGFGLAWAI EH+ +AP + Sbjct: 693 RGISTFMAEMLETAAILKAATPSSLVIIDELGRGTSTYDGFGLAWAISEHIVNEIQAPCM 752
Query: 341 FATHFHELTALESNKDSLGQPTVGVANYHMKAHLDDVSRKLTMLYKVEEGACDQSFGIHV 162 FATHFHELTAL+ GVAN+H++A +D SRKLTMLY+++ GACDQSFGIH Sbjct: 753 FATHFHELTALKG--------ASGVANFHVEALIDQASRKLTMLYQIKPGACDQSFGIHC 804
Query: 161 AEFAHFPESVIELAKEKANELEDFSQASNKEEISK-EEVGSKRKR 30 AEFA FPE V+++A++KA ELEDFS+ + ++ E +KR+R Sbjct: 805 AEFARFPEEVLKVARQKAEELEDFSKEGAERAVADVSEPNAKRQR 849
>tr|A4RQJ8|A4RQJ8_OSTLU Predicted protein OS=Ostreococcus lucimarinus (strain CCE9901) GN=OSTLU_28688 PE=3 SV=1 Length = 936
Score = 202 bits (514), Expect = 8e-51 Identities = 106/168 (63%), Positives = 126/168 (75%) Frame = -2
Query: 521 RGVSTFKAEMLETAAILKAATDRSLIIIDELGRGTSTYDGFGLAWAICEHLTEITRAPTL 342 RG+STF AEMLETAAILKAAT SL+IIDELGRGTSTYDGFGLAWAI EH+ +AP L Sbjct: 716 RGISTFMAEMLETAAILKAATSSSLVIIDELGRGTSTYDGFGLAWAISEHIVNEIQAPCL 775
Query: 341 FATHFHELTALESNKDSLGQPTVGVANYHMKAHLDDVSRKLTMLYKVEEGACDQSFGIHV 162 FATHFHELTALE GV+N+H++A +D SRKLTMLY+++ GACDQSFGIH Sbjct: 776 FATHFHELTALEGPS--------GVSNFHVEALIDQESRKLTMLYQIKPGACDQSFGIHC 827
Query: 161 AEFAHFPESVIELAKEKANELEDFSQASNKEEISKEEVGSKRKRVCGP 18 AEFA FPE V+++A+ KA+ELEDFS+ S E + KR+R P Sbjct: 828 AEFARFPEEVLKIARAKADELEDFSK-SGAERAVADISDPKRQRTDEP 874
>tr|A4RDT4|A4RDT4_MAGGR DNA mismatch repair protein msh-2 OS=Magnaporthe grisea GN=MGG_00879 PE=3 SV=1 Length = 924
Score = 177 bits (450), Expect = 2e-43 Identities = 102/176 (57%), Positives = 119/176 (67%), Gaps = 14/176 (7%) Frame = -2
Query: 521 RGVSTFKAEMLETAAILKAATDRSLIIIDELGRGTSTYDGFGLAWAICEHLTEITRAPTL 342 +GVSTF AEMLETA ILK+AT SLIIIDELGRGTSTYDGFGLAWAI EH+ L Sbjct: 709 KGVSTFMAEMLETANILKSATAESLIIIDELGRGTSTYDGFGLAWAISEHIVVEIGCSAL 768
Query: 341 FATHFHELTAL-ESNKDSLGQPTVGVANYHMKAHLD--------DVSRKLTMLYKVEEGA 189 FATHFHELTAL E +K VAN H+ AH+ D R++T+LYKVE G Sbjct: 769 FATHFHELTALAEQHKQ--------VANLHVTAHISGTGDDAKADEKREVTLLYKVEPGI 820
Query: 188 CDQSFGIHVAEFAHFPESVIELAKEKANELEDFSQASNKE---EISKEEV--GSKR 36 CDQSFGIHVAE FP+ V+ +AK KA+ELEDF+ N + SK++V GS R Sbjct: 821 CDQSFGIHVAELVRFPDKVVRMAKRKADELEDFTTKHNDNLGLQYSKDDVEQGSAR 876
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