BP918494
Clone id YMU001_000114_B07
Library
Length 482
Definition Adiantum capillus-veneris mRNA. clone: YMU001_000114_B07.
Accession
Tissue type prothallium
Developmental stage -
Contig ID -
Sequence
CATCGGCATCACGTAGCTGCAGGCGGCCCTCTGGCAGGCCATCGATCACGCATCGCCCGC
ATCACCACAGCACCGTCGCTACCGCCGCGCCTGTTGGATATAGCCCTGGCGTCCCTCTAT
GTTGGCAATGCGGAACTCGACAGAATCCCTGCGGAATGCAAGGTGGTCGGCCCCACCTTA
GGCTTCCTCGCCTTCTGCGTTGCTGCAGCAATTGAATGGCCCATTGGTAGCGTCGTCTAC
TGCTTCCGCCGCATCAAAGGGCGCCGCATTCTCACCCACCCCAACCGCGTCGTCTACCCT
CGCGTGCGCAGTGCCATCCCCATCTAGAGGTTGCCATAGCCCAACTATCATCTACATAAG
AGCTATGCTTGTACACTTCCCCACAACAGACAGCTGCCGTCAACTATAGGCCTACAAACA
CTTTTGTCTCATGATTTGCCCTTCAAAACTCACATTGTTCAATCAATCTCACACATTCAC
TT
■■Homology search results ■■ -
sp_hit_id Q9WRL6
Definition sp|Q9WRL6|PRTP_TUHV2 Probable processing and transport protein OS=Tupaiid herpesvirus (strain 2)
Align length 49
Score (bit) 32.0
E-value 1.5
Report
BLASTX 2.2.19 [Nov-02-2008]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.

Query= BP918494|Adiantum capillus-veneris mRNA, clone:
YMU001_000114_B07.
(482 letters)

Database: uniprot_sprot.fasta
412,525 sequences; 148,809,765 total letters

Searching..................................................done



Score E
Sequences producing significant alignments: (bits) Value

sp|Q9WRL6|PRTP_TUHV2 Probable processing and transport protein O... 32 1.5
sp|A6NEV1|U572C_HUMAN UPF0572 protein ENSP00000372650 OS=Homo sa... 30 5.7
sp|Q9CXK9|RBM33_MOUSE RNA-binding protein 33 OS=Mus musculus GN=... 30 5.7
sp|P15822|ZEP1_HUMAN Zinc finger protein 40 OS=Homo sapiens GN=H... 30 7.5
sp|P16329|NO75_PEA Early nodulin-75 (Fragment) OS=Pisum sativum ... 30 7.5
sp|Q54QR1|LIMA_DICDI LIM domain-containing protein A OS=Dictyost... 29 9.8

>sp|Q9WRL6|PRTP_TUHV2 Probable processing and transport protein
OS=Tupaiid herpesvirus (strain 2) GN=PRTP PE=3 SV=1
Length = 782

Score = 32.0 bits (71), Expect = 1.5
Identities = 20/49 (40%), Positives = 22/49 (44%), Gaps = 7/49 (14%)
Frame = -3

Query: 333 QPLDGDGTAHARVDDAVGV-------GENAAPFDAAEAVDDATNGPFNC 208
+PLDG GT A A G G AA AA A +A GPF C
Sbjct: 409 RPLDGAGTRGAAAATAAGARGAAEGTGGAAAAGGAAAAAGEAAGGPFQC 457


>sp|A6NEV1|U572C_HUMAN UPF0572 protein ENSP00000372650 OS=Homo
sapiens PE=3 SV=1
Length = 266

Score = 30.0 bits (66), Expect = 5.7
Identities = 13/27 (48%), Positives = 17/27 (62%), Gaps = 4/27 (14%)
Frame = +3

Query: 243 LPPHQRA----PHSHPPQPRRLPSRAQ 311
LPP R PH+HPP P+R P +A+
Sbjct: 234 LPPSPRVGSPGPHAHPPLPKRPPCKAR 260


>sp|Q9CXK9|RBM33_MOUSE RNA-binding protein 33 OS=Mus musculus
GN=Rbm33 PE=2 SV=2
Length = 1231

Score = 30.0 bits (66), Expect = 5.7
Identities = 14/29 (48%), Positives = 16/29 (55%)
Frame = +3

Query: 240 LLPPHQRAPHSHPPQPRRLPSRAQCHPHL 326
L PPHQ P PP P+ P + Q H HL
Sbjct: 666 LQPPHQPPPQHQPP-PQHQPQQHQHHHHL 693


>sp|P15822|ZEP1_HUMAN Zinc finger protein 40 OS=Homo sapiens GN=HIVEP1
PE=1 SV=2
Length = 2717

Score = 29.6 bits (65), Expect = 7.5
Identities = 13/21 (61%), Positives = 14/21 (66%)
Frame = -2

Query: 163 PCIPQGFCRVPHCQHRGTPGL 101
PCIP G RVP Q+ TPGL
Sbjct: 2464 PCIPIGQIRVPGLQNLSTPGL 2484


>sp|P16329|NO75_PEA Early nodulin-75 (Fragment) OS=Pisum sativum
GN=ENOD2 PE=2 SV=1
Length = 112

Score = 29.6 bits (65), Expect = 7.5
Identities = 10/24 (41%), Positives = 13/24 (54%)
Frame = +3

Query: 246 PPHQRAPHSHPPQPRRLPSRAQCH 317
PPH++ PH HPP + P H
Sbjct: 17 PPHEKPPHEHPPPEYQPPHEKPPH 40


>sp|Q54QR1|LIMA_DICDI LIM domain-containing protein A
OS=Dictyostelium discoideum GN=limA PE=2 SV=1
Length = 1183

Score = 29.3 bits (64), Expect = 9.8
Identities = 10/24 (41%), Positives = 13/24 (54%)
Frame = +3

Query: 252 HQRAPHSHPPQPRRLPSRAQCHPH 323
H + PHSHP P P ++ H H
Sbjct: 715 HPQHPHSHPQHPHSHPHQSHSHSH 738


tr_hit_id A9T6Q9
Definition tr|A9T6Q9|A9T6Q9_PHYPA Predicted protein OS=Physcomitrella patens subsp. patens
Align length 58
Score (bit) 93.6
E-value 5.0e-22
Report
BLASTX 2.2.19 [Nov-02-2008]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.

Query= BP918494|Adiantum capillus-veneris mRNA, clone:
YMU001_000114_B07.
(482 letters)

Database: uniprot_trembl.fasta
7,341,751 sequences; 2,391,615,440 total letters

Searching..................................................done



Score E
Sequences producing significant alignments: (bits) Value

tr|A9T6Q9|A9T6Q9_PHYPA Predicted protein OS=Physcomitrella paten... 94 5e-22
tr|A9TAX4|A9TAX4_PHYPA Predicted protein OS=Physcomitrella paten... 92 8e-22
tr|A7PR86|A7PR86_VITVI Chromosome chr14 scaffold_26, whole genom... 96 2e-21
tr|A9RI42|A9RI42_PHYPA Predicted protein OS=Physcomitrella paten... 91 2e-21
tr|A9TS48|A9TS48_PHYPA Predicted protein OS=Physcomitrella paten... 91 1e-20
tr|A9NPQ2|A9NPQ2_PICSI Putative uncharacterized protein OS=Picea... 90 1e-20
tr|B4UWC1|B4UWC1_ARAHY Little protein 1 OS=Arachis hypogaea PE=4... 94 2e-20
tr|A9SXC0|A9SXC0_PHYPA Predicted protein OS=Physcomitrella paten... 90 2e-20
tr|B6SJA5|B6SJA5_MAIZE Putative uncharacterized protein OS=Zea m... 90 3e-20
tr|Q6QB11|Q6QB11_ORYSJ Little protein 1 (Putative uncharacterize... 89 2e-19
tr|A2WT56|A2WT56_ORYSI Putative uncharacterized protein OS=Oryza... 89 2e-19
tr|Q1G377|Q1G377_ARATH Putative uncharacterized protein OS=Arabi... 86 6e-19
tr|A0ME38|A0ME38_ARATH Putative uncharacterized protein (Fragmen... 86 6e-19
tr|A9TIC8|A9TIC8_PHYPA Predicted protein OS=Physcomitrella paten... 81 6e-19
tr|Q9FPJ1|Q9FPJ1_ARATH AT5g17460 OS=Arabidopsis thaliana GN=AT5g... 83 5e-18
tr|Q1G3B4|Q1G3B4_ARATH Putative uncharacterized protein OS=Arabi... 80 3e-16
tr|A0ME00|A0ME00_ARATH Putative uncharacterized protein (Fragmen... 80 3e-16
tr|A9TQ12|A9TQ12_PHYPA Predicted protein OS=Physcomitrella paten... 77 6e-15
tr|Q9LF56|Q9LF56_ARATH Putative uncharacterized protein K3M16_30... 72 7e-15
tr|A6R773|A6R773_AJECN Predicted protein OS=Ajellomyces capsulat... 47 2e-07
tr|B2VYR2|B2VYR2_PYRTR Putative uncharacterized protein OS=Pyren... 38 6e-05
tr|Q0CP62|Q0CP62_ASPTN Predicted protein OS=Aspergillus terreus ... 35 3e-04
tr|A1CK99|A1CK99_ASPCL Putative uncharacterized protein OS=Asper... 34 8e-04
tr|B8N1Y6|B8N1Y6_ASPFL Putative uncharacterized protein OS=Asper... 33 0.001
tr|A8IX64|A8IX64_CHLRE Predicted protein OS=Chlamydomonas reinha... 44 0.004
tr|A7EZ47|A7EZ47_SCLS1 Predicted protein OS=Sclerotinia scleroti... 35 0.010
tr|A8HT55|A8HT55_CHLRE Predicted protein OS=Chlamydomonas reinha... 41 0.026
tr|Q2LCS9|Q2LCS9_9GEMI Nuclear shuttle protein OS=Tomato chlorot... 36 1.1
tr|A4X3M9|A4X3M9_SALTO Putative uncharacterized protein OS=Salin... 34 3.1
tr|A3BXX3|A3BXX3_ORYSJ Putative uncharacterized protein OS=Oryza... 34 3.1

>tr|A9T6Q9|A9T6Q9_PHYPA Predicted protein OS=Physcomitrella patens
subsp. patens GN=PHYPADRAFT_168395 PE=4 SV=1
Length = 73

Score = 93.6 bits (231), Expect(2) = 5e-22
Identities = 39/58 (67%), Positives = 47/58 (81%)
Frame = +1

Query: 148 PAECKVVGPTLGFLAFCVAAAIEWPIGSVVYCFRRIKGRRILTHPNRVVYPRVRSAIP 321
P CK+VGPTLG +AF + A +EWP+G+ +YCFRR K RR+L HPNRVVYPRV SAIP
Sbjct: 15 PCHCKIVGPTLGVVAFLITAVVEWPLGAALYCFRRQKARRLLHHPNRVVYPRVASAIP 72



Score = 34.3 bits (77), Expect(2) = 5e-22
Identities = 12/14 (85%), Positives = 13/14 (92%)
Frame = +3

Query: 111 VPLCWQCGTRQNPC 152
+PLC QCGTRQNPC
Sbjct: 3 IPLCVQCGTRQNPC 16


>tr|A9TAX4|A9TAX4_PHYPA Predicted protein OS=Physcomitrella patens
subsp. patens GN=PHYPADRAFT_59800 PE=4 SV=1
Length = 90

Score = 92.0 bits (227), Expect(2) = 8e-22
Identities = 37/61 (60%), Positives = 48/61 (78%)
Frame = +1

Query: 142 RIPAECKVVGPTLGFLAFCVAAAIEWPIGSVVYCFRRIKGRRILTHPNRVVYPRVRSAIP 321
R P C+++GPT+GF+AF VAA +EWP+G+ VYCFR +KGRRI+ HP VVYPRV + P
Sbjct: 30 RNPCHCRILGPTVGFVAFAVAAVVEWPVGAFVYCFRHLKGRRIMAHPAAVVYPRVSACFP 89

Query: 322 I 324
I
Sbjct: 90 I 90



Score = 35.0 bits (79), Expect(2) = 8e-22
Identities = 12/16 (75%), Positives = 15/16 (93%)
Frame = +3

Query: 105 PGVPLCWQCGTRQNPC 152
P VPLC++CGTR+NPC
Sbjct: 18 PFVPLCFECGTRRNPC 33


>tr|A7PR86|A7PR86_VITVI Chromosome chr14 scaffold_26, whole genome
shotgun sequence OS=Vitis vinifera GN=GSVIVT00022375001
PE=4 SV=1
Length = 142

Score = 95.5 bits (236), Expect(2) = 2e-21
Identities = 41/59 (69%), Positives = 48/59 (81%)
Frame = +1

Query: 148 PAECKVVGPTLGFLAFCVAAAIEWPIGSVVYCFRRIKGRRILTHPNRVVYPRVRSAIPI 324
P CKVVGPTLGFLAF VAA +EWP+G++VYCFR +KGRRI+ HP VVYP V +A PI
Sbjct: 84 PCRCKVVGPTLGFLAFAVAAIVEWPVGALVYCFRHMKGRRIMAHPAAVVYPSVSNAFPI 142



Score = 30.4 bits (67), Expect(2) = 2e-21
Identities = 10/14 (71%), Positives = 11/14 (78%)
Frame = +3

Query: 111 VPLCWQCGTRQNPC 152
+PLC QCGT NPC
Sbjct: 72 IPLCVQCGTHSNPC 85


>tr|A9RI42|A9RI42_PHYPA Predicted protein OS=Physcomitrella patens
subsp. patens GN=PHYPADRAFT_175024 PE=4 SV=1
Length = 73

Score = 91.3 bits (225), Expect(2) = 2e-21
Identities = 38/58 (65%), Positives = 46/58 (79%)
Frame = +1

Query: 148 PAECKVVGPTLGFLAFCVAAAIEWPIGSVVYCFRRIKGRRILTHPNRVVYPRVRSAIP 321
P CK+VGPTLG +AF V A +EWP+G+ +YCFR+ K RR+L HPNRVVYPRV AIP
Sbjct: 15 PCRCKIVGPTLGVVAFLVTAVVEWPLGAALYCFRKQKARRLLHHPNRVVYPRVSGAIP 72



Score = 34.3 bits (77), Expect(2) = 2e-21
Identities = 12/14 (85%), Positives = 13/14 (92%)
Frame = +3

Query: 111 VPLCWQCGTRQNPC 152
+PLC QCGTRQNPC
Sbjct: 3 IPLCVQCGTRQNPC 16


>tr|A9TS48|A9TS48_PHYPA Predicted protein OS=Physcomitrella patens
subsp. patens GN=PHYPADRAFT_149740 PE=4 SV=1
Length = 73

Score = 90.9 bits (224), Expect(2) = 1e-20
Identities = 37/58 (63%), Positives = 46/58 (79%)
Frame = +1

Query: 148 PAECKVVGPTLGFLAFCVAAAIEWPIGSVVYCFRRIKGRRILTHPNRVVYPRVRSAIP 321
P CK+VGPTLG +AF + A +EWP+G+ +YCFR+ K RR+L HPNRVVYPRV AIP
Sbjct: 15 PCRCKIVGPTLGVVAFLITAVVEWPLGAALYCFRKQKARRLLHHPNRVVYPRVSGAIP 72



Score = 32.3 bits (72), Expect(2) = 1e-20
Identities = 11/14 (78%), Positives = 12/14 (85%)
Frame = +3

Query: 111 VPLCWQCGTRQNPC 152
+PLC QCGT QNPC
Sbjct: 3 IPLCVQCGTHQNPC 16


>tr|A9NPQ2|A9NPQ2_PICSI Putative uncharacterized protein OS=Picea
sitchensis PE=4 SV=1
Length = 76

Score = 89.7 bits (221), Expect(2) = 1e-20
Identities = 38/58 (65%), Positives = 47/58 (81%)
Frame = +1

Query: 148 PAECKVVGPTLGFLAFCVAAAIEWPIGSVVYCFRRIKGRRILTHPNRVVYPRVRSAIP 321
P CK+VGPTLGFLAFCVAA +EWP+G++V+CFR KGRRI+ HP V+P V +AIP
Sbjct: 18 PCRCKIVGPTLGFLAFCVAALVEWPVGALVWCFRHAKGRRIMGHPVTHVFPCVSNAIP 75



Score = 33.1 bits (74), Expect(2) = 1e-20
Identities = 12/17 (70%), Positives = 13/17 (76%)
Frame = +3

Query: 102 SPGVPLCWQCGTRQNPC 152
S G+P C QCGTR NPC
Sbjct: 3 SGGMPFCVQCGTRDNPC 19


>tr|B4UWC1|B4UWC1_ARAHY Little protein 1 OS=Arachis hypogaea PE=4
SV=1
Length = 76

Score = 93.6 bits (231), Expect(2) = 2e-20
Identities = 39/59 (66%), Positives = 48/59 (81%)
Frame = +1

Query: 148 PAECKVVGPTLGFLAFCVAAAIEWPIGSVVYCFRRIKGRRILTHPNRVVYPRVRSAIPI 324
P CKVVGPT+GFLAF AA +EWP+G++VYCFR +KGR+I+ HP VVYP V +AIPI
Sbjct: 18 PCRCKVVGPTVGFLAFAAAAVVEWPVGALVYCFRHMKGRKIMAHPATVVYPSVTNAIPI 76



Score = 28.9 bits (63), Expect(2) = 2e-20
Identities = 9/15 (60%), Positives = 11/15 (73%)
Frame = +3

Query: 108 GVPLCWQCGTRQNPC 152
G+P+C QCG NPC
Sbjct: 5 GIPICVQCGNTGNPC 19


>tr|A9SXC0|A9SXC0_PHYPA Predicted protein OS=Physcomitrella patens
subsp. patens GN=PHYPADRAFT_136829 PE=4 SV=1
Length = 73

Score = 90.1 bits (222), Expect(2) = 2e-20
Identities = 38/58 (65%), Positives = 45/58 (77%)
Frame = +1

Query: 148 PAECKVVGPTLGFLAFCVAAAIEWPIGSVVYCFRRIKGRRILTHPNRVVYPRVRSAIP 321
P CK+VGPTLG +AF V A +EWP+G +YCFR+ K RR+L HPNRVVYPRV AIP
Sbjct: 15 PCRCKIVGPTLGVVAFLVTAVVEWPLGVALYCFRKQKARRLLHHPNRVVYPRVSGAIP 72



Score = 32.3 bits (72), Expect(2) = 2e-20
Identities = 11/14 (78%), Positives = 12/14 (85%)
Frame = +3

Query: 111 VPLCWQCGTRQNPC 152
+PLC QCGT QNPC
Sbjct: 3 IPLCVQCGTHQNPC 16


>tr|B6SJA5|B6SJA5_MAIZE Putative uncharacterized protein OS=Zea mays
PE=4 SV=1
Length = 74

Score = 90.1 bits (222), Expect(2) = 3e-20
Identities = 41/59 (69%), Positives = 45/59 (76%)
Frame = +1

Query: 148 PAECKVVGPTLGFLAFCVAAAIEWPIGSVVYCFRRIKGRRILTHPNRVVYPRVRSAIPI 324
P CKVVGPTLGF+AF VA IEWP+G+ VY FR KGRRI+ HP VVYPRV AIPI
Sbjct: 16 PCRCKVVGPTLGFVAFVVAGVIEWPLGAAVYLFRHRKGRRIMAHPATVVYPRVTRAIPI 74



Score = 31.6 bits (70), Expect(2) = 3e-20
Identities = 11/14 (78%), Positives = 12/14 (85%)
Frame = +3

Query: 111 VPLCWQCGTRQNPC 152
VP+C QCGTR NPC
Sbjct: 4 VPVCVQCGTRSNPC 17


>tr|Q6QB11|Q6QB11_ORYSJ Little protein 1 (Putative uncharacterized
protein) (Os01g0644200 protein) OS=Oryza sativa subsp.
japonica GN=LP1 PE=4 SV=1
Length = 74

Score = 89.4 bits (220), Expect(2) = 2e-19
Identities = 39/59 (66%), Positives = 46/59 (77%)
Frame = +1

Query: 148 PAECKVVGPTLGFLAFCVAAAIEWPIGSVVYCFRRIKGRRILTHPNRVVYPRVRSAIPI 324
P CKV+GPTLGF+AF VA +EWP+G+ VY FR KGRRI+ HP VVYPR+ SAIPI
Sbjct: 16 PCRCKVLGPTLGFVAFVVAGVVEWPLGAFVYLFRHRKGRRIMGHPANVVYPRITSAIPI 74



Score = 29.6 bits (65), Expect(2) = 2e-19
Identities = 10/14 (71%), Positives = 11/14 (78%)
Frame = +3

Query: 111 VPLCWQCGTRQNPC 152
VP+C QCGT NPC
Sbjct: 4 VPVCVQCGTHSNPC 17