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NBDC - LSDB Archive
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AcEST | BlastX Result : Swiss-Prot | BlastX Result : TrEMBL | AcESTcontig | About Libraries
BP918503
Clone id YMU001_000114_C06
Library
Length 439
Definition Adiantum capillus-veneris mRNA. clone: YMU001_000114_C06.
Accession
Tissue type prothallium
Developmental stage -
Contig ID
Sequence 
TGCCCAATCTCTCCTTACCCACAACAGCTTGACGACGTCTTTCTCCTCATCTGCATCGTC
CCTGTCTTTCTATAGAGGTCGAGACTTGTGCGGAAGGAACCGAGTTCCTTGCTTGGATAG
CAGAAAGCAGCATGGCCACCCTCGCCTGCTTGTCAGAGCTGTAGCTAAGGAGATTGTTTT
TGATCAGTCGTCTCGGTCTGCTTTGCAGGCTGGCATTGATAAACTTGCAGATGCAGTGGG
AGTGACCTTGGGTCCGCGAGGTAGGCAATCAAAGTGTAACTTTTCTGGCCGTAGGCTGGG
CTCTTCGCTCTTTGCTACAAGCTCTGTCTGAATTCTCGGGTTCAAAGGCTGCTTGTAGAT
GATATTTTGATTTGCTGTGTCTACTCTTTGTTCAAGAATTCAGTATCGGGTAGACTTGAT
GTGTCCTAGTGACAAAAAA
■■Homology search results ■■ -
sp_hit_id P08926
Definition sp|P08926|RUBA_PEA RuBisCO large subunit-binding protein subunit alpha, chloroplastic OS=Pisum sativum
Align length 54
Score (bit) 68.9
E-value 9.0e-12
Report 
BLASTX 2.2.19 [Nov-02-2008]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= BP918503|Adiantum capillus-veneris mRNA, clone:
YMU001_000114_C06.
         (439 letters)

Database: uniprot_sprot.fasta 
           412,525 sequences; 148,809,765 total letters

Searching..................................................done



                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

sp|P08926|RUBA_PEA RuBisCO large subunit-binding protein subunit...    69   9e-12
sp|P21239|RUB1_BRANA RuBisCO large subunit-binding protein subun...    67   4e-11
sp|P34794|RUB2_BRANA RuBisCO large subunit-binding protein subun...    66   6e-11
sp|P21238|RUBA_ARATH RuBisCO large subunit-binding protein subun...    64   3e-10
sp|Q42694|RUBA_CHLRE RuBisCO large subunit-binding protein subun...    63   5e-10
sp|P08823|RUBA_WHEAT RuBisCO large subunit-binding protein subun...    60   4e-09
sp|Q5Z1F9|CH601_NOCFA 60 kDa chaperonin 1 OS=Nocardia farcinica ...    52   8e-07
sp|Q8KJ24|CH60_CLOBO 60 kDa chaperonin OS=Clostridium botulinum ...    52   1e-06
sp|A0QSS4|CH602_MYCS2 60 kDa chaperonin 2 OS=Mycobacterium smegm...    51   2e-06
sp|A4TEN6|CH602_MYCGI 60 kDa chaperonin 2 OS=Mycobacterium gilvu...    51   2e-06
sp|A0Q2T1|CH60_CLONN 60 kDa chaperonin OS=Clostridium novyi (str...    50   3e-06
sp|Q67KB8|CH60_SYMTH 60 kDa chaperonin OS=Symbiobacterium thermo...    50   5e-06
sp|A4FPA5|CH602_SACEN 60 kDa chaperonin 2 OS=Saccharopolyspora e...    50   5e-06
sp|Q7MBC7|CH601_GLOVI 60 kDa chaperonin 1 OS=Gloeobacter violace...    50   5e-06
sp|Q9KKF0|CH60_CLODI 60 kDa chaperonin OS=Clostridium difficile ...    49   7e-06
sp|Q18CT5|CH60_CLOD6 60 kDa chaperonin OS=Clostridium difficile ...    49   7e-06
sp|Q2IFK0|CH602_ANADE 60 kDa chaperonin 2 OS=Anaeromyxobacter de...    49   7e-06
sp|B0CFQ6|CH601_ACAM1 60 kDa chaperonin 1 OS=Acaryochloris marin...    49   7e-06
sp|A1T577|CH602_MYCVP 60 kDa chaperonin 2 OS=Mycobacterium vanba...    49   9e-06
sp|Q1BCW7|CH602_MYCSS 60 kDa chaperonin 2 OS=Mycobacterium sp. (...    49   9e-06
sp|A1UC26|CH602_MYCSK 60 kDa chaperonin 2 OS=Mycobacterium sp. (...    49   9e-06
sp|A3PVQ7|CH602_MYCSJ 60 kDa chaperonin 2 OS=Mycobacterium sp. (...    49   9e-06
sp|Q2RGL8|CH602_MOOTA 60 kDa chaperonin 2 OS=Moorella thermoacet...    49   9e-06
sp|Q4JTF2|CH602_CORJK 60 kDa chaperonin 2 OS=Corynebacterium jei...    49   9e-06
sp|Q2S5Z8|CH601_SALRD 60 kDa chaperonin 1 OS=Salinibacter ruber ...    49   9e-06
sp|Q04E64|CH60_OENOB 60 kDa chaperonin OS=Oenococcus oeni (strai...    49   1e-05
sp|A4IJV3|CH60_GEOTN 60 kDa chaperonin OS=Geobacillus thermodeni...    49   1e-05
sp|Q8VV84|CH60_BACTR 60 kDa chaperonin OS=Bacillus thermoglucosi...    49   1e-05
sp|Q07201|CH60_BACST 60 kDa chaperonin OS=Bacillus stearothermop...    49   1e-05
sp|Q2S0Q3|CH602_SALRD 60 kDa chaperonin 2 OS=Salinibacter ruber ...    49   1e-05

>sp|P08926|RUBA_PEA RuBisCO large subunit-binding protein subunit
           alpha, chloroplastic OS=Pisum sativum PE=1 SV=2
          Length = 587

 Score = 68.9 bits (167), Expect = 9e-12
 Identities = 36/54 (66%), Positives = 41/54 (75%), Gaps = 7/54 (12%)
 Frame = +2

Query: 125 KQHGHP-------RLLVRAVAKEIVFDQSSRSALQAGIDKLADAVGVTLGPRGR 265
           KQHG         R +V+A AK+I FDQ SRSA+QAGIDKLADAVG+TLGPRGR
Sbjct: 29  KQHGRVNFRQKPNRFVVKAAAKDIAFDQHSRSAMQAGIDKLADAVGLTLGPRGR 82


>sp|P21239|RUB1_BRANA RuBisCO large subunit-binding protein subunit
           alpha, chloroplastic (Fragment) OS=Brassica napus PE=2
           SV=2
          Length = 546

 Score = 66.6 bits (161), Expect = 4e-11
 Identities = 34/41 (82%), Positives = 36/41 (87%)
 Frame = +2

Query: 143 RLLVRAVAKEIVFDQSSRSALQAGIDKLADAVGVTLGPRGR 265
           R  VRA  KEI FDQSSR+ALQAGIDKLADAVG+TLGPRGR
Sbjct: 1   RFSVRANVKEISFDQSSRAALQAGIDKLADAVGLTLGPRGR 41


>sp|P34794|RUB2_BRANA RuBisCO large subunit-binding protein subunit
           alpha, chloroplastic OS=Brassica napus PE=2 SV=1
          Length = 583

 Score = 66.2 bits (160), Expect = 6e-11
 Identities = 33/41 (80%), Positives = 36/41 (87%)
 Frame = +2

Query: 143 RLLVRAVAKEIVFDQSSRSALQAGIDKLADAVGVTLGPRGR 265
           R  +RA  KEI FDQSSR+ALQAGIDKLADAVG+TLGPRGR
Sbjct: 40  RFSLRANVKEIAFDQSSRAALQAGIDKLADAVGLTLGPRGR 80


>sp|P21238|RUBA_ARATH RuBisCO large subunit-binding protein subunit
           alpha, chloroplastic OS=Arabidopsis thaliana
           GN=At2g28000 PE=1 SV=2
          Length = 586

 Score = 63.9 bits (154), Expect = 3e-10
 Identities = 32/41 (78%), Positives = 34/41 (82%)
 Frame = +2

Query: 143 RLLVRAVAKEIVFDQSSRSALQAGIDKLADAVGVTLGPRGR 265
           R  VRA  KEI FDQ SR+ALQAGIDKLAD VG+TLGPRGR
Sbjct: 41  RFSVRANVKEIAFDQHSRAALQAGIDKLADCVGLTLGPRGR 81


>sp|Q42694|RUBA_CHLRE RuBisCO large subunit-binding protein subunit
           alpha, chloroplastic OS=Chlamydomonas reinhardtii PE=2
           SV=1
          Length = 580

 Score = 63.2 bits (152), Expect = 5e-10
 Identities = 33/42 (78%), Positives = 37/42 (88%), Gaps = 1/42 (2%)
 Frame = +2

Query: 143 RLLVRAV-AKEIVFDQSSRSALQAGIDKLADAVGVTLGPRGR 265
           RL++RA  AKEIVFDQ SR  LQAGI+K+ADAVGVTLGPRGR
Sbjct: 28  RLVIRAADAKEIVFDQESRRRLQAGINKVADAVGVTLGPRGR 69


>sp|P08823|RUBA_WHEAT RuBisCO large subunit-binding protein subunit
           alpha, chloroplastic (Fragment) OS=Triticum aestivum
           PE=1 SV=1
          Length = 543

 Score = 60.1 bits (144), Expect = 4e-09
 Identities = 29/36 (80%), Positives = 33/36 (91%)
 Frame = +2

Query: 158 AVAKEIVFDQSSRSALQAGIDKLADAVGVTLGPRGR 265
           A AKEI FDQ SR+ALQAG++KLA+AVGVTLGPRGR
Sbjct: 2   ADAKEIAFDQKSRAALQAGVEKLANAVGVTLGPRGR 37


>sp|Q5Z1F9|CH601_NOCFA 60 kDa chaperonin 1 OS=Nocardia farcinica
           GN=groL1 PE=3 SV=1
          Length = 536

 Score = 52.4 bits (124), Expect = 8e-07
 Identities = 24/35 (68%), Positives = 30/35 (85%)
 Frame = +2

Query: 161 VAKEIVFDQSSRSALQAGIDKLADAVGVTLGPRGR 265
           +AK+I FD+ +R AL+ G+DKLADAV VTLGPRGR
Sbjct: 1   MAKQIEFDEKARRALERGVDKLADAVKVTLGPRGR 35


>sp|Q8KJ24|CH60_CLOBO 60 kDa chaperonin OS=Clostridium botulinum
           GN=groL PE=3 SV=1
          Length = 543

 Score = 51.6 bits (122), Expect = 1e-06
 Identities = 27/56 (48%), Positives = 37/56 (66%)
 Frame = +2

Query: 161 VAKEIVFDQSSRSALQAGIDKLADAVGVTLGPRGRQSKCNFSGRRLGSSLFATSSV 328
           +AK I+F + SR A+QAG+DKLA+AV VTLGP+GR    +   ++ GS L     V
Sbjct: 1   MAKSILFGEESRRAMQAGVDKLANAVKVTLGPKGRNVVLD---KKFGSPLITNDGV 53


>sp|A0QSS4|CH602_MYCS2 60 kDa chaperonin 2 OS=Mycobacterium
           smegmatis GN=groL2 PE=3 SV=1
          Length = 540

 Score = 50.8 bits (120), Expect = 2e-06
 Identities = 22/35 (62%), Positives = 32/35 (91%)
 Frame = +2

Query: 161 VAKEIVFDQSSRSALQAGIDKLADAVGVTLGPRGR 265
           ++K+I F++++R A++AG+DKLADAV VTLGPRGR
Sbjct: 1   MSKQIEFNETARRAMEAGVDKLADAVKVTLGPRGR 35


>sp|A4TEN6|CH602_MYCGI 60 kDa chaperonin 2 OS=Mycobacterium gilvum
           (strain PYR-GCK) GN=groL2 PE=3 SV=1
          Length = 541

 Score = 50.8 bits (120), Expect = 2e-06
 Identities = 22/35 (62%), Positives = 32/35 (91%)
 Frame = +2

Query: 161 VAKEIVFDQSSRSALQAGIDKLADAVGVTLGPRGR 265
           ++K+I F++++R A++AG+DKLADAV VTLGPRGR
Sbjct: 1   MSKQIEFNETARRAMEAGVDKLADAVKVTLGPRGR 35
tr_hit_id A7PQU6
Definition tr|A7PQU6|A7PQU6_VITVI Chromosome chr6 scaffold_25, whole genome shotgun sequence OS=Vitis vinifera
Align length 41
Score (bit) 70.5
E-value 4.0e-11
Report 
BLASTX 2.2.19 [Nov-02-2008]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= BP918503|Adiantum capillus-veneris mRNA, clone:
YMU001_000114_C06.
         (439 letters)

Database: uniprot_trembl.fasta 
           7,341,751 sequences; 2,391,615,440 total letters

Searching..................................................done



                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

tr|A7PQU6|A7PQU6_VITVI Chromosome chr6 scaffold_25, whole genome...    70   4e-11
tr|A5B8H0|A5B8H0_VITVI Putative uncharacterized protein OS=Vitis...    70   4e-11
tr|B6SXW8|B6SXW8_MAIZE RuBisCO large subunit-binding protein sub...    70   5e-11
tr|A9T5W1|A9T5W1_PHYPA Predicted protein OS=Physcomitrella paten...    70   7e-11
tr|Q9ZTV1|Q9ZTV1_CANLI Chaperonin 60 alpha subunit OS=Canavalia ...    68   2e-10
tr|Q9FXL5|Q9FXL5_AVIMR Chaperonin-60 alpha subunit OS=Avicennia ...    67   3e-10
tr|Q2PEX5|Q2PEX5_TRIPR Putative rubisco subunit binding-protein ...    67   3e-10
tr|Q2PEW7|Q2PEW7_TRIPR Putative rubisco subunit binding-protein ...    67   3e-10
tr|Q2PEQ0|Q2PEQ0_TRIPR Putative rubisco subunit binding-protein ...    67   3e-10
tr|Q2PEP1|Q2PEP1_TRIPR Putative rubisco subunit binding-protein ...    67   3e-10
tr|B8LQV7|B8LQV7_PICSI Putative uncharacterized protein OS=Picea...    67   4e-10
tr|Q2QU06|Q2QU06_ORYSJ Os12g0277500 protein OS=Oryza sativa subs...    66   8e-10
tr|A2ZJH7|A2ZJH7_ORYSI Putative uncharacterized protein OS=Oryza...    66   8e-10
tr|B7FM02|B7FM02_MEDTR Putative uncharacterized protein OS=Medic...    65   2e-09
tr|Q8L5U4|Q8L5U4_ARATH Putative rubisco subunit binding-protein ...    64   4e-09
tr|A4S614|A4S614_OSTLU Chaperonin 60 alpha chain, chloroplast OS...    64   5e-09
tr|A8JIB7|A8JIB7_CHLRE Chaperonin 60A OS=Chlamydomonas reinhardt...    63   6e-09
tr|A9SSR9|A9SSR9_PHYPA Predicted protein OS=Physcomitrella paten...    62   1e-08
tr|Q84P86|Q84P86_ORYSJ Putative chaperonin 60 alpha subunit (Fra...    61   3e-08
tr|Q7X9A7|Q7X9A7_ORYSJ Putative rubisco subunit binding-protein ...    61   3e-08
tr|Q0DLK5|Q0DLK5_ORYSJ Os03g0859700 protein (Fragment) OS=Oryza ...    61   3e-08
tr|A2XPB4|A2XPB4_ORYSI Putative uncharacterized protein OS=Oryza...    61   3e-08
tr|Q00XK6|Q00XK6_OSTTA RuBisCO subunit binding-protein alpha sub...    60   4e-08
tr|Q5IX17|Q5IX17_PROWI Plastid 60 kDa chaperonin alpha subunit (...    57   6e-07
tr|Q56XV8|Q56XV8_ARATH Chaperonin 60 alpha chain-like protein OS...    57   6e-07
tr|A7P2R7|A7P2R7_VITVI Chromosome chr1 scaffold_5, whole genome ...    54   5e-06
tr|Q2MGR4|Q2MGR4_MEDTR GroEL-like chaperone, ATPase OS=Medicago ...    52   1e-05
tr|B1B8X4|B1B8X4_CLOBO 60 kDa chaperonin OS=Clostridium botulinu...    52   2e-05
tr|B1TYB7|B1TYB7_MICLU Chaperonin GroEL OS=Micrococcus luteus NC...    50   4e-05
tr|B3ENV7|B3ENV7_CHLPB Chaperonin GroEL OS=Chlorobium phaeobacte...    50   6e-05

>tr|A7PQU6|A7PQU6_VITVI Chromosome chr6 scaffold_25, whole genome
           shotgun sequence OS=Vitis vinifera GN=GSVIVT00022204001
           PE=3 SV=1
          Length = 582

 Score = 70.5 bits (171), Expect = 4e-11
 Identities = 35/41 (85%), Positives = 38/41 (92%)
 Frame = +2

Query: 143 RLLVRAVAKEIVFDQSSRSALQAGIDKLADAVGVTLGPRGR 265
           R +VRA AKEI FDQSSR+ALQAGIDKLADAVG+TLGPRGR
Sbjct: 37  RFVVRASAKEIAFDQSSRAALQAGIDKLADAVGLTLGPRGR 77


>tr|A5B8H0|A5B8H0_VITVI Putative uncharacterized protein OS=Vitis
           vinifera GN=VITISV_037064 PE=3 SV=1
          Length = 576

 Score = 70.5 bits (171), Expect = 4e-11
 Identities = 35/41 (85%), Positives = 38/41 (92%)
 Frame = +2

Query: 143 RLLVRAVAKEIVFDQSSRSALQAGIDKLADAVGVTLGPRGR 265
           R +VRA AKEI FDQSSR+ALQAGIDKLADAVG+TLGPRGR
Sbjct: 41  RFVVRASAKEIAFDQSSRAALQAGIDKLADAVGLTLGPRGR 81


>tr|B6SXW8|B6SXW8_MAIZE RuBisCO large subunit-binding protein
           subunit alpha OS=Zea mays PE=2 SV=1
          Length = 584

 Score = 70.1 bits (170), Expect = 5e-11
 Identities = 37/55 (67%), Positives = 44/55 (80%)
 Frame = +2

Query: 101 RVPCLDSRKQHGHPRLLVRAVAKEIVFDQSSRSALQAGIDKLADAVGVTLGPRGR 265
           R+P +  R+    P+LLVRA AKEI FDQ SR+ALQAG++KLA AVGVTLGPRGR
Sbjct: 32  RLPAVARRR----PQLLVRASAKEIAFDQGSRAALQAGVEKLAAAVGVTLGPRGR 82


>tr|A9T5W1|A9T5W1_PHYPA Predicted protein OS=Physcomitrella patens
           subsp. patens GN=PHYPADRAFT_191937 PE=3 SV=1
          Length = 583

 Score = 69.7 bits (169), Expect = 7e-11
 Identities = 34/47 (72%), Positives = 41/47 (87%)
 Frame = +2

Query: 125 KQHGHPRLLVRAVAKEIVFDQSSRSALQAGIDKLADAVGVTLGPRGR 265
           ++  + +L+V + AKEI+FDQ SRSALQAGIDKLADAVGVTLGPRGR
Sbjct: 30  RRGNNSKLVVTSAAKEILFDQESRSALQAGIDKLADAVGVTLGPRGR 76


>tr|Q9ZTV1|Q9ZTV1_CANLI Chaperonin 60 alpha subunit OS=Canavalia
           lineata PE=2 SV=1
          Length = 581

 Score = 68.2 bits (165), Expect = 2e-10
 Identities = 35/47 (74%), Positives = 40/47 (85%)
 Frame = +2

Query: 125 KQHGHPRLLVRAVAKEIVFDQSSRSALQAGIDKLADAVGVTLGPRGR 265
           +Q  H R  V+A AKEI FDQSSR+A+QAGIDKLADAVG+TLGPRGR
Sbjct: 34  RQPNH-RFAVKASAKEIAFDQSSRAAIQAGIDKLADAVGLTLGPRGR 79


>tr|Q9FXL5|Q9FXL5_AVIMR Chaperonin-60 alpha subunit OS=Avicennia
           marina GN=chpa PE=2 SV=1
          Length = 326

 Score = 67.4 bits (163), Expect = 3e-10
 Identities = 33/41 (80%), Positives = 36/41 (87%)
 Frame = +2

Query: 143 RLLVRAVAKEIVFDQSSRSALQAGIDKLADAVGVTLGPRGR 265
           R +VRA AKEI FDQ SRSA+Q GIDKLADAVG+TLGPRGR
Sbjct: 44  RFVVRADAKEIAFDQKSRSAMQTGIDKLADAVGLTLGPRGR 84


>tr|Q2PEX5|Q2PEX5_TRIPR Putative rubisco subunit binding-protein
           alpha subunit (Fragment) OS=Trifolium pratense PE=2 SV=1
          Length = 578

 Score = 67.4 bits (163), Expect = 3e-10
 Identities = 35/54 (64%), Positives = 40/54 (74%), Gaps = 7/54 (12%)
 Frame = +2

Query: 125 KQHGHP-------RLLVRAVAKEIVFDQSSRSALQAGIDKLADAVGVTLGPRGR 265
           KQHG         R +V+A AK+I FDQ SR A+QAGIDKLADAVG+TLGPRGR
Sbjct: 20  KQHGRVNYRQNPNRFMVKAAAKDIAFDQHSRRAMQAGIDKLADAVGLTLGPRGR 73


>tr|Q2PEW7|Q2PEW7_TRIPR Putative rubisco subunit binding-protein
           alpha subunit OS=Trifolium pratense PE=2 SV=1
          Length = 588

 Score = 67.4 bits (163), Expect = 3e-10
 Identities = 35/54 (64%), Positives = 40/54 (74%), Gaps = 7/54 (12%)
 Frame = +2

Query: 125 KQHGHP-------RLLVRAVAKEIVFDQSSRSALQAGIDKLADAVGVTLGPRGR 265
           KQHG         R +V+A AK+I FDQ SR A+QAGIDKLADAVG+TLGPRGR
Sbjct: 30  KQHGRVNYRQNPNRFMVKAAAKDIAFDQHSRRAMQAGIDKLADAVGLTLGPRGR 83


>tr|Q2PEQ0|Q2PEQ0_TRIPR Putative rubisco subunit binding-protein
           alpha subunit OS=Trifolium pratense PE=2 SV=1
          Length = 588

 Score = 67.4 bits (163), Expect = 3e-10
 Identities = 35/54 (64%), Positives = 40/54 (74%), Gaps = 7/54 (12%)
 Frame = +2

Query: 125 KQHGHP-------RLLVRAVAKEIVFDQSSRSALQAGIDKLADAVGVTLGPRGR 265
           KQHG         R +V+A AK+I FDQ SR A+QAGIDKLADAVG+TLGPRGR
Sbjct: 30  KQHGRVNYRQNPNRFMVKAAAKDIAFDQHSRRAMQAGIDKLADAVGLTLGPRGR 83


>tr|Q2PEP1|Q2PEP1_TRIPR Putative rubisco subunit binding-protein
           alpha subunit OS=Trifolium pratense PE=2 SV=1
          Length = 588

 Score = 67.4 bits (163), Expect = 3e-10
 Identities = 35/54 (64%), Positives = 40/54 (74%), Gaps = 7/54 (12%)
 Frame = +2

Query: 125 KQHGHP-------RLLVRAVAKEIVFDQSSRSALQAGIDKLADAVGVTLGPRGR 265
           KQHG         R +V+A AK+I FDQ SR A+QAGIDKLADAVG+TLGPRGR
Sbjct: 30  KQHGRVNYRQNPNRFMVKAAAKDIAFDQHSRRAMQAGIDKLADAVGLTLGPRGR 83