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NBDC - LSDB Archive
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AcEST | BlastX Result : Swiss-Prot | BlastX Result : TrEMBL | AcESTcontig | About Libraries
BP918504
Clone id YMU001_000114_C07
Library
Length 391
Definition Adiantum capillus-veneris mRNA. clone: YMU001_000114_C07.
Accession
Tissue type prothallium
Developmental stage -
Contig ID -
Sequence 
TTCAGCAAATACTTTCAATTGGCAATTACAATTATTACATGTAATCATCTGATTACAAAA
GAATTTTGGTATGTTAGAAAATTACAAGGCCCCACTCTATCCCTGAAAGCAAAAATTGTC
AGCCCATATTGGGAGGCAGGAAGAAGTTTGAATGCAAGAGGCCTCCAGCTATACATCAGA
TAGGCTGTAGAAGAGCCCATTCTGCAAACGCAACAAGCGACCAGGATATCTCTTTTTGCT
TCAACTATGTCTCACATTTCACCACCAAATGGCTGCCTTTGCAAGGAAATCAAGTTCTTT
GCAGCATATACAAAGTGTGACACCTTTTCCATAGCTTTCTAAGCTTCTCTGCTACCTGCA
TGTGCCTCAAAGTGTTTGCGACTCTCCACTC
■■Homology search results ■■ -
sp_hit_id Q99L48
Definition sp|Q99L48|NMD3_MOUSE 60S ribosomal export protein NMD3 OS=Mus musculus
Align length 70
Score (bit) 33.5
E-value 0.34
Report 
BLASTX 2.2.19 [Nov-02-2008]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= BP918504|Adiantum capillus-veneris mRNA, clone:
YMU001_000114_C07.
         (391 letters)

Database: uniprot_sprot.fasta 
           412,525 sequences; 148,809,765 total letters

Searching..................................................done



                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

sp|Q99L48|NMD3_MOUSE 60S ribosomal export protein NMD3 OS=Mus mu...    33   0.34 
sp|Q5RC82|NMD3_PONAB 60S ribosomal export protein NMD3 OS=Pongo ...    32   0.76 
sp|Q96D46|NMD3_HUMAN 60S ribosomal export protein NMD3 OS=Homo s...    32   0.76 
sp|Q6P2Z6|NMD3_XENTR 60S ribosomal export protein NMD3 OS=Xenopu...    31   2.2  
sp|Q5BLF0|NMD3_DANRE 60S ribosomal export protein NMD3 OS=Danio ...    31   2.2  
sp|Q6GNS3|NMD3_XENLA 60S ribosomal export protein NMD3 OS=Xenopu...    30   3.8  
sp|Q08DS5|NMD3_BOVIN 60S ribosomal export protein NMD3 OS=Bos ta...    30   3.8  

>sp|Q99L48|NMD3_MOUSE 60S ribosomal export protein NMD3 OS=Mus
           musculus GN=Nmd3 PE=2 SV=1
          Length = 503

 Score = 33.5 bits (75), Expect = 0.34
 Identities = 20/70 (28%), Positives = 34/70 (48%)
 Frame = +3

Query: 180 IGCRRAHSANATSDQDISFCFNYVSHFTTKWLPLQGNQVLCSIYKV*HLFHSFLSFSATC 359
           + CR   S    S    S  +NY S F+ + +P+  + V+C   K   L  S  + S  C
Sbjct: 216 VPCRYKASQRLISQDIHSNTYNYKSTFSVEIVPICKDNVVCLSPK---LAQSLGNMSQIC 272

Query: 360 MCLKVFATLH 389
           +C++V + +H
Sbjct: 273 ICIRVTSAIH 282


>sp|Q5RC82|NMD3_PONAB 60S ribosomal export protein NMD3 OS=Pongo
           abelii GN=NMD3 PE=2 SV=1
          Length = 503

 Score = 32.3 bits (72), Expect = 0.76
 Identities = 19/70 (27%), Positives = 34/70 (48%)
 Frame = +3

Query: 180 IGCRRAHSANATSDQDISFCFNYVSHFTTKWLPLQGNQVLCSIYKV*HLFHSFLSFSATC 359
           + CR   S    S    S  +NY S F+ + +P+  + V+C   K   L  S  + +  C
Sbjct: 216 VPCRYKASQRLISQDIHSNTYNYKSTFSVEIVPICKDNVVCLSPK---LAQSLGNMNQIC 272

Query: 360 MCLKVFATLH 389
           +C++V + +H
Sbjct: 273 VCIRVTSAIH 282


>sp|Q96D46|NMD3_HUMAN 60S ribosomal export protein NMD3 OS=Homo
           sapiens GN=NMD3 PE=1 SV=1
          Length = 503

 Score = 32.3 bits (72), Expect = 0.76
 Identities = 19/70 (27%), Positives = 34/70 (48%)
 Frame = +3

Query: 180 IGCRRAHSANATSDQDISFCFNYVSHFTTKWLPLQGNQVLCSIYKV*HLFHSFLSFSATC 359
           + CR   S    S    S  +NY S F+ + +P+  + V+C   K   L  S  + +  C
Sbjct: 216 VPCRYKASQRLISQDIHSNTYNYKSTFSVEIVPICKDNVVCLSPK---LAQSLGNMNQIC 272

Query: 360 MCLKVFATLH 389
           +C++V + +H
Sbjct: 273 VCIRVTSAIH 282


>sp|Q6P2Z6|NMD3_XENTR 60S ribosomal export protein NMD3 OS=Xenopus
           tropicalis GN=nmd3 PE=2 SV=1
          Length = 504

 Score = 30.8 bits (68), Expect = 2.2
 Identities = 18/70 (25%), Positives = 35/70 (50%)
 Frame = +3

Query: 180 IGCRRAHSANATSDQDISFCFNYVSHFTTKWLPLQGNQVLCSIYKV*HLFHSFLSFSATC 359
           + CR   S    S    +  +NY S F+ + +P+  + ++C   K   L  S  + +  C
Sbjct: 216 VPCRFKASQRLISHDIHTNAYNYKSTFSVEIVPVCKDNLVCLSPK---LAQSLGNMNQIC 272

Query: 360 MCLKVFATLH 389
           +C++V +T+H
Sbjct: 273 ICVRVTSTIH 282


>sp|Q5BLF0|NMD3_DANRE 60S ribosomal export protein NMD3 OS=Danio
           rerio GN=nmd3 PE=2 SV=1
          Length = 505

 Score = 30.8 bits (68), Expect = 2.2
 Identities = 18/70 (25%), Positives = 34/70 (48%)
 Frame = +3

Query: 180 IGCRRAHSANATSDQDISFCFNYVSHFTTKWLPLQGNQVLCSIYKV*HLFHSFLSFSATC 359
           + CR   S    S    S  +NY S F+ + +P+  + V+C   +   L  S  +    C
Sbjct: 216 VPCRSKASQRLISHDVHSNTYNYKSTFSVEIVPVCKDNVVCLSPR---LAQSLGNMGQVC 272

Query: 360 MCLKVFATLH 389
           +C++V +++H
Sbjct: 273 VCVRVTSSIH 282


>sp|Q6GNS3|NMD3_XENLA 60S ribosomal export protein NMD3 OS=Xenopus
           laevis GN=nmd3 PE=2 SV=1
          Length = 504

 Score = 30.0 bits (66), Expect = 3.8
 Identities = 18/70 (25%), Positives = 34/70 (48%)
 Frame = +3

Query: 180 IGCRRAHSANATSDQDISFCFNYVSHFTTKWLPLQGNQVLCSIYKV*HLFHSFLSFSATC 359
           + CR   S    S    +  +NY S F+ + +P+  + ++C   K   L  S  + +  C
Sbjct: 216 VPCRFKASQRLISHDIHTNAYNYKSTFSVEIVPVCKDNLVCLSPK---LAQSLGNMNQIC 272

Query: 360 MCLKVFATLH 389
           +C +V +T+H
Sbjct: 273 ICARVTSTIH 282


>sp|Q08DS5|NMD3_BOVIN 60S ribosomal export protein NMD3 OS=Bos
           taurus GN=NMD3 PE=2 SV=1
          Length = 503

 Score = 30.0 bits (66), Expect = 3.8
 Identities = 18/57 (31%), Positives = 32/57 (56%), Gaps = 1/57 (1%)
 Frame = +3

Query: 222 QDI-SFCFNYVSHFTTKWLPLQGNQVLCSIYKV*HLFHSFLSFSATCMCLKVFATLH 389
           QDI S  +NY S F+ + +P+  + V+C   K   L  S  + +  C+C++V + +H
Sbjct: 229 QDIHSNTYNYKSTFSVEIVPICKDNVVCLSPK---LAQSLGNMNQICVCIRVTSVIH 282
tr_hit_id B6LC29
Definition tr|B6LC29|B6LC29_BRAFL Putative uncharacterized protein OS=Branchiostoma floridae
Align length 55
Score (bit) 33.9
E-value 4.2
Report 
BLASTX 2.2.19 [Nov-02-2008]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= BP918504|Adiantum capillus-veneris mRNA, clone:
YMU001_000114_C07.
         (391 letters)

Database: uniprot_trembl.fasta 
           7,341,751 sequences; 2,391,615,440 total letters

Searching..................................................done



                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

tr|B6LC29|B6LC29_BRAFL Putative uncharacterized protein OS=Branc...    34   4.2  
tr|B6KZZ3|B6KZZ3_BRAFL Putative uncharacterized protein OS=Branc...    34   4.2  
tr|B1DGZ5|B1DGZ5_9BACL ATP-dependent DNA helicase RecG OS=Paenib...    33   7.1  
tr|B1WC44|B1WC44_RAT Nmd3 protein (RCG62699, isoform CRA_b) OS=R...    33   9.3  
tr|B5YK61|B5YK61_THEYD 2-isopropylmalate synthase/homocitrate sy...    33   9.3  

>tr|B6LC29|B6LC29_BRAFL Putative uncharacterized protein
           OS=Branchiostoma floridae GN=BRAFLDRAFT_68737 PE=4 SV=1
          Length = 283

 Score = 33.9 bits (76), Expect = 4.2
 Identities = 17/55 (30%), Positives = 30/55 (54%)
 Frame = +1

Query: 70  YVRKLQGPTLSLKAKIVSPYWEAGRSLNARGLQLYIR*AVEEPILQTQQATRISL 234
           YV  +  P+ S+ A     YW  GR +  +  + + R +VEE IL+ + A+++ L
Sbjct: 70  YVVSISSPSESIFAWTEESYWYLGRRIRLKDCEQHYRASVEEFILRQKSASKVML 124


>tr|B6KZZ3|B6KZZ3_BRAFL Putative uncharacterized protein
           OS=Branchiostoma floridae GN=BRAFLDRAFT_64459 PE=4 SV=1
          Length = 330

 Score = 33.9 bits (76), Expect = 4.2
 Identities = 17/55 (30%), Positives = 30/55 (54%)
 Frame = +1

Query: 70  YVRKLQGPTLSLKAKIVSPYWEAGRSLNARGLQLYIR*AVEEPILQTQQATRISL 234
           YV  +  P+ S+ A     YW  GR +  +  + + R +VEE IL+ + A+++ L
Sbjct: 117 YVVSISSPSESIFAWTEESYWYLGRRIRLKDCEQHYRASVEEFILRQKSASKVML 171


>tr|B1DGZ5|B1DGZ5_9BACL ATP-dependent DNA helicase RecG
           OS=Paenibacillus sp. JDR-2 GN=Pjdr2DRAFT_4396 PE=4 SV=1
          Length = 684

 Score = 33.1 bits (74), Expect = 7.1
 Identities = 21/61 (34%), Positives = 30/61 (49%)
 Frame = -2

Query: 387 GESQTL*GTCR*QRSLESYGKGVTLCICCKELDFLAKAAIWW*NVRHS*SKKRYPGRLLR 208
           GE  T+ GT R    L+ YGK  +   C  E+D +   A+W+   RH    +  PGR + 
Sbjct: 55  GEKVTVQGTIRGNGILQRYGKNKSRLTCKIEVDHMLVTAVWF--NRHFLQGQLTPGREIM 112

Query: 207 L 205
           L
Sbjct: 113 L 113


>tr|B1WC44|B1WC44_RAT Nmd3 protein (RCG62699, isoform CRA_b)
           OS=Rattus norvegicus GN=Nmd3 PE=2 SV=1
          Length = 503

 Score = 32.7 bits (73), Expect = 9.3
 Identities = 19/70 (27%), Positives = 34/70 (48%)
 Frame = +3

Query: 180 IGCRRAHSANATSDQDISFCFNYVSHFTTKWLPLQGNQVLCSIYKV*HLFHSFLSFSATC 359
           + CR   S    S    S  +NY S F+ + +P+  + V+C   K   L  S  + +  C
Sbjct: 216 VPCRYKSSQRLISQDIHSNTYNYKSTFSVEIVPICKDNVVCLSPK---LAQSLGNMNQIC 272

Query: 360 MCLKVFATLH 389
           +C++V + +H
Sbjct: 273 ICIRVTSAIH 282


>tr|B5YK61|B5YK61_THEYD 2-isopropylmalate synthase/homocitrate
           synthase family protein OS=Thermodesulfovibrio
           yellowstonii (strain ATCC 51303 / DSM 11347 / YP87)
           GN=THEYE_A0785 PE=4 SV=1
          Length = 528

 Score = 32.7 bits (73), Expect = 9.3
 Identities = 15/27 (55%), Positives = 18/27 (66%)
 Frame = -3

Query: 338 KAMEKVSHFVYAAKNLISLQRQPFGGE 258
           K + +VS FVY   NLI  +RQPF GE
Sbjct: 267 KKLTEVSRFVYEIANLIPFKRQPFVGE 293