NBDC - アーカイブトップ - ヘルプ
データベースの説明 | データ項目の説明 | ダウンロード | 利用許諾 | ヘルプ
AcEST | BlastX Result : Swiss-Prot | BlastX Result : TrEMBL | AcESTcontig | About Libraries
NBDC - LSDB Archive
Description of this DB | Description of data items | Download | License
AcEST | BlastX Result : Swiss-Prot | BlastX Result : TrEMBL | AcESTcontig | About Libraries
BP918519
Clone id YMU001_000114_D12
Library
Length 557
Definition Adiantum capillus-veneris mRNA. clone: YMU001_000114_D12.
Accession
Tissue type prothallium
Developmental stage -
Contig ID -
Sequence 
ATACAACAGAGCTTAGAGAGGGGAAGAGAAAACAGGATGTAGCTTTTCAAAAACTCTCCA
CAGAAAAGGGGTCAACACACAAGGACATCTCACAATTCACAGCCGCAGGCAAATCAAGCC
ATGTCCATCTCTCCTCTATCACATCAAACTGAAGAGCCCGATGTGAGCCCGAGGCCATTA
CGACAACAAGCTCGGCGTGGCCGGCGAATTTGACCGGGGTAAGACCTGCTTTGCGTGACT
CCATTGCCTCCTCCAGCATGTGCTTGCACATCTGTGAAGGTGCCCTTGCCACCTCTCTCC
ACATCTTGGTAGACCAGTCCAATTCCCAAACAACAGCATATAAATTAATGATGCTACTGC
TTTCGGTATGCGCATTGATTTCATTAACAACTGCGCCAGCATCGACCCCATTATCATCGC
TGCTCGCTCTGTCATTGCCTGATGTAGAGGCGGACGCTTCCGCTGTGCCTATCAATAGAA
CTTTGCCCTTGCAACCCTGTATGACCTGCGGCATCGCCCGAACACGCCCCCCTTCCTTAG
GAACTTGAAACACCAAA
■■Homology search results ■■ -
sp_hit_id Q9LFV5
Definition sp|Q9LFV5|FK111_ARATH F-box/Kelch-repeat protein At5g15710 OS=Arabidopsis thaliana
Align length 85
Score (bit) 37.0
E-value 0.065
Report 
BLASTX 2.2.19 [Nov-02-2008]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= BP918519|Adiantum capillus-veneris mRNA, clone:
YMU001_000114_D12.
         (557 letters)

Database: uniprot_sprot.fasta 
           412,525 sequences; 148,809,765 total letters

Searching..................................................done



                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

sp|Q9LFV5|FK111_ARATH F-box/Kelch-repeat protein At5g15710 OS=Ar...    37   0.065
sp|Q39090|UFO_ARATH Protein UNUSUAL FLORAL ORGANS OS=Arabidopsis...    36   0.15 
sp|Q5ZIU8|KTNB1_CHICK Katanin p80 WD40-containing subunit B1 OS=...    32   2.1  
sp|Q0MW30|NEUL3_MOUSE E3 ubiquitin-protein ligase NEURL3 OS=Mus ...    31   3.6  
sp|A8MQ27|NEUL3_HUMAN E3 ubiquitin-protein ligase NEURL3 OS=Homo...    31   4.7  
sp|Q9W4S9|PDE4C_DROME cAMP-specific 3',5'-cyclic phosphodiestera...    30   6.1  
sp|Q8TD19|NEK9_HUMAN Serine/threonine-protein kinase Nek9 OS=Hom...    30   6.1  
sp|Q9YH58|FTCD_CHICK Formimidoyltransferase-cyclodeaminase OS=Ga...    30   8.0  

>sp|Q9LFV5|FK111_ARATH F-box/Kelch-repeat protein At5g15710
           OS=Arabidopsis thaliana GN=At5g15710 PE=2 SV=1
          Length = 448

 Score = 37.0 bits (84), Expect = 0.065
 Identities = 19/85 (22%), Positives = 39/85 (45%)
 Frame = -2

Query: 331 VWELDWSTKMWREVARAPSQMCKHMLEEAMESRKAGLTPVKFAGHAELVVVMASGSHRAL 152
           +WELD +   W E++R P +  + +L  + E         +  G   L+   +    + L
Sbjct: 360 IWELDHTKVSWVEISRMPPKYFRALLRLSAER-------FECFGQDNLICFTSWNQGKGL 412

Query: 151 QFDVIEERWTWLDLPAAVNCEMSLC 77
            ++V ++ W+W+   A  +C   +C
Sbjct: 413 LYNVDKKIWSWISGCALQSCNSQVC 437


>sp|Q39090|UFO_ARATH Protein UNUSUAL FLORAL ORGANS OS=Arabidopsis
           thaliana GN=UFO PE=1 SV=2
          Length = 442

 Score = 35.8 bits (81), Expect = 0.15
 Identities = 17/72 (23%), Positives = 30/72 (41%)
 Frame = -2

Query: 331 VWELDWSTKMWREVARAPSQMCKHMLEEAMESRKAGLTPVKFAGHAELVVVMASGSHRAL 152
           +W L      W E+ R P  +      E       G    +  G+ E V+++  G+   L
Sbjct: 327 LWSLQQDNATWVEIERMPQPLYTQFAAEE------GGKGFECVGNQEFVMIVLRGTSLQL 380

Query: 151 QFDVIEERWTWL 116
            FD++ + W W+
Sbjct: 381 LFDIVRKSWLWV 392


>sp|Q5ZIU8|KTNB1_CHICK Katanin p80 WD40-containing subunit B1
           OS=Gallus gallus GN=KATNB1 PE=2 SV=2
          Length = 657

 Score = 32.0 bits (71), Expect = 2.1
 Identities = 19/78 (24%), Positives = 40/78 (51%), Gaps = 1/78 (1%)
 Frame = -2

Query: 514 MPQVIQGCKGKVLLIGTAEASASTSGNDRASSD-DNGVDAGAVVNEINAHTESSSIINLY 338
           M Q+ +G K   +++ +   +  T     ++SD  N VDA    N+++   +  +I+N  
Sbjct: 490 MSQIRKGHKTVCMVLTSRHKNLDTVRAVWSTSDMKNSVDAAVATNDLSVVVDLLNIVNQT 549

Query: 337 AVVWELDWSTKMWREVAR 284
           A +W+LD  T +  ++ +
Sbjct: 550 ASLWKLDLCTVVLPQIEK 567


>sp|Q0MW30|NEUL3_MOUSE E3 ubiquitin-protein ligase NEURL3 OS=Mus
           musculus GN=Neurl3 PE=2 SV=1
          Length = 546

 Score = 31.2 bits (69), Expect = 3.6
 Identities = 18/52 (34%), Positives = 31/52 (59%), Gaps = 3/52 (5%)
 Frame = -2

Query: 496 GCKGKVLLIGTAEASAST---SGNDRASSDDNGVDAGAVVNEINAHTESSSI 350
           G  G++ L+GT ++S+ T   SG+   S DD+  D    VN+ ++ +ESS +
Sbjct: 415 GVAGQLRLLGTLQSSSETMTPSGSFSGSQDDSDSDMTFGVNQSSSASESSLV 466


>sp|A8MQ27|NEUL3_HUMAN E3 ubiquitin-protein ligase NEURL3 OS=Homo
           sapiens GN=NEURL3 PE=3 SV=1
          Length = 555

 Score = 30.8 bits (68), Expect = 4.7
 Identities = 18/52 (34%), Positives = 31/52 (59%), Gaps = 3/52 (5%)
 Frame = -2

Query: 496 GCKGKVLLIGTAEASAST---SGNDRASSDDNGVDAGAVVNEINAHTESSSI 350
           G  G++ L+GT ++S +T   SG+   S DD+  D    VN+ ++ +ESS +
Sbjct: 424 GVAGQLRLLGTLQSSPATTTPSGSLSGSQDDSDSDMTFSVNQSSSASESSLV 475


>sp|Q9W4S9|PDE4C_DROME cAMP-specific 3',5'-cyclic phosphodiesterase,
           isoforms N/G OS=Drosophila melanogaster GN=dnc PE=2 SV=2
          Length = 983

 Score = 30.4 bits (67), Expect = 6.1
 Identities = 24/77 (31%), Positives = 31/77 (40%)
 Frame = +3

Query: 33  QDVAFQKLSTEKGSTHKDISQFTAAGKSSHVHLSSITSN*RARCEPEAITTTSSAWPANL 212
           +D   Q    E    + +I      G SS    SS+ S         + TTTSS+     
Sbjct: 186 EDDEDQTYDRETEEFYSNIQDAAGTGSSSRSKRSSLFSR-----SDSSATTTSSSGGGTF 240

Query: 213 TGVRPALRDSIASSSMC 263
           TG +     SI SSSMC
Sbjct: 241 TGGKRRSAASILSSSMC 257


>sp|Q8TD19|NEK9_HUMAN Serine/threonine-protein kinase Nek9 OS=Homo
           sapiens GN=NEK9 PE=1 SV=2
          Length = 979

 Score = 30.4 bits (67), Expect = 6.1
 Identities = 12/20 (60%), Positives = 16/20 (80%)
 Frame = +1

Query: 238 TPLPPPACACTSVKVPLPPL 297
           TPL PPACAC+S++V +  L
Sbjct: 883 TPLTPPACACSSLQVEVERL 902


>sp|Q9YH58|FTCD_CHICK Formimidoyltransferase-cyclodeaminase
           OS=Gallus gallus GN=FTCD PE=2 SV=1
          Length = 541

 Score = 30.0 bits (66), Expect = 8.0
 Identities = 15/33 (45%), Positives = 21/33 (63%), Gaps = 1/33 (3%)
 Frame = -3

Query: 453 PPLHQAMTERAAMI-MGSMLAQLLMKSMRIPKA 358
           PPLHQAM E  AM+   S      M++M++PK+
Sbjct: 396 PPLHQAMDELVAMVDADSRAFSSYMEAMKLPKS 428
tr_hit_id A9SK59
Definition tr|A9SK59|A9SK59_PHYPA Predicted protein (Fragment) OS=Physcomitrella patens subsp. patens
Align length 72
Score (bit) 50.1
E-value 8.0e-05
Report 
BLASTX 2.2.19 [Nov-02-2008]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= BP918519|Adiantum capillus-veneris mRNA, clone:
YMU001_000114_D12.
         (557 letters)

Database: uniprot_trembl.fasta 
           7,341,751 sequences; 2,391,615,440 total letters

Searching..................................................done



                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

tr|A9SK59|A9SK59_PHYPA Predicted protein (Fragment) OS=Physcomit...    50   8e-05
tr|Q84UE8|Q84UE8_LOTJA Proliferating floral organs protein (UFO-...    47   7e-04
tr|B6CNU4|B6CNU4_PETHY DOUBLE TOP OS=Petunia hybrida GN=DOT PE=2...    47   0.001
tr|A9RIS8|A9RIS8_PHYPA Predicted protein OS=Physcomitrella paten...    45   0.003
tr|Q6QVX3|Q6QVX3_VEROI Fimbriata (Fragment) OS=Verbena officinal...    44   0.006
tr|Q6QVX0|Q6QVX0_PAUTO Fimbriata (Fragment) OS=Paulownia tomento...    44   0.008
tr|Q9ZTZ0|Q9ZTZ0_PEA Stamina pistilloidia OS=Pisum sativum GN=St...    42   0.022
tr|Q84L18|Q84L18_PEA Stp-h4 OS=Pisum sativum PE=4 SV=1                 42   0.022
tr|Q84JN4|Q84JN4_PEA Stp-h2 (Stp-h3) OS=Pisum sativum PE=4 SV=1        42   0.022
tr|B6E0Z1|B6E0Z1_CAPAN ANANTHA OS=Capsicum annuum GN=AN PE=2 SV=1      41   0.038
tr|B6E0Z0|B6E0Z0_SOLLC ANANTHA (Fragment) OS=Solanum lycopersicu...    41   0.038
tr|B6CNU5|B6CNU5_SOLLC DOUBLE TOP OS=Solanum lycopersicum GN=DOT...    41   0.038
tr|Q5BMD2|Q5BMD2_MEDTR Stamina pistilloidia (Fragment) OS=Medica...    41   0.050
tr|Q6QVX2|Q6QVX2_SALCC Fimbriata (Fragment) OS=Salvia coccinea G...    40   0.065
tr|A7P2M5|A7P2M5_VITVI Chromosome chr1 scaffold_5, whole genome ...    40   0.065
tr|A5BDR7|A5BDR7_VITVI Putative uncharacterized protein OS=Vitis...    40   0.065
tr|Q7XR72|Q7XR72_ORYSJ Os04g0668600 protein OS=Oryza sativa subs...    39   0.14 
tr|B8AW14|B8AW14_ORYSI Putative uncharacterized protein OS=Oryza...    39   0.14 
tr|B4FF73|B4FF73_MAIZE F-box domain containing protein OS=Zea ma...    39   0.14 
tr|A3AYF5|A3AYF5_ORYSJ Putative uncharacterized protein OS=Oryza...    39   0.14 
tr|Q6QVW9|Q6QVW9_MIMLE Fimbriata (Fragment) OS=Mimulus lewisii G...    39   0.19 
tr|A9TB91|A9TB91_PHYPA Predicted protein OS=Physcomitrella paten...    39   0.19 
tr|Q6QVW8|Q6QVW8_MIMGU Fimbriata (Fragment) OS=Mimulus guttatus ...    39   0.25 
tr|B6D6T5|B6D6T5_SOLPI F-box DOT OS=Solanum pimpinellifolium PE=...    39   0.25 
tr|Q1KUZ9|Q1KUZ9_9ROSI Putative uncharacterized protein OS=Cleom...    38   0.32 
tr|Q6QVX5|Q6QVX5_SYRVU Fimbriata (Fragment) OS=Syringa vulgaris ...    38   0.42 
tr|Q41223|Q41223_ANTMA Fim protein OS=Antirrhinum majus GN=fim P...    38   0.42 
tr|Q9VRA7|Q9VRA7_DROME CG1812, isoform A OS=Drosophila melanogas...    37   0.94 
tr|Q8IQ29|Q8IQ29_DROME CG1812, isoform B OS=Drosophila melanogas...    37   0.94 
tr|B4PYI2|B4PYI2_DROYA GE17888 OS=Drosophila yakuba GN=GE17888 P...    37   0.94 

>tr|A9SK59|A9SK59_PHYPA Predicted protein (Fragment)
           OS=Physcomitrella patens subsp. patens
           GN=PHYPADRAFT_44026 PE=4 SV=1
          Length = 330

 Score = 50.1 bits (118), Expect = 8e-05
 Identities = 26/72 (36%), Positives = 37/72 (51%)
 Frame = -2

Query: 331 VWELDWSTKMWREVARAPSQMCKHMLEEAMESRKAGLTPVKFAGHAELVVVMASGSHRAL 152
           +WEL+ ST MW EV R P  +CKH L+   +SR      V   GH  L+ + +     AL
Sbjct: 262 IWELEQSTMMWVEVVRMPHTLCKHFLK---DSRNGDFMCV---GHNNLICITSYKCPLAL 315

Query: 151 QFDVIEERWTWL 116
            +D  +  W W+
Sbjct: 316 IYDFSKRSWRWV 327


>tr|Q84UE8|Q84UE8_LOTJA Proliferating floral organs protein
           (UFO-like protein) OS=Lotus japonicus GN=Pfo PE=2 SV=1
          Length = 449

 Score = 47.0 bits (110), Expect = 7e-04
 Identities = 24/72 (33%), Positives = 34/72 (47%)
 Frame = -2

Query: 331 VWELDWSTKMWREVARAPSQMCKHMLEEAMESRKAGLTPVKFAGHAELVVVMASGSHRAL 152
           VW L     MW E  R P Q+     E        G    +  GH E VV+M  G+ +AL
Sbjct: 342 VWTLQACGTMWVESERMPQQLYIQFAEIE------GGNGFECVGHGEFVVIMIKGTDKAL 395

Query: 151 QFDVIEERWTWL 116
            +D++ +RW W+
Sbjct: 396 LYDLVRKRWQWI 407


>tr|B6CNU4|B6CNU4_PETHY DOUBLE TOP OS=Petunia hybrida GN=DOT PE=2
           SV=1
          Length = 453

 Score = 46.6 bits (109), Expect = 0.001
 Identities = 23/72 (31%), Positives = 36/72 (50%)
 Frame = -2

Query: 331 VWELDWSTKMWREVARAPSQMCKHMLEEAMESRKAGLTPVKFAGHAELVVVMASGSHRAL 152
           +W L     MW E+ R P Q+     E  +E+ +         GH E VV++   S +AL
Sbjct: 326 LWSLQECGTMWVEIERMPQQLYVQFAE--VENGQG----FNCVGHGEFVVILIKNSDKAL 379

Query: 151 QFDVIEERWTWL 116
            FD +++RW W+
Sbjct: 380 LFDFVKKRWVWI 391


>tr|A9RIS8|A9RIS8_PHYPA Predicted protein OS=Physcomitrella patens
           subsp. patens GN=PHYPADRAFT_114815 PE=4 SV=1
          Length = 362

 Score = 44.7 bits (104), Expect = 0.003
 Identities = 23/72 (31%), Positives = 36/72 (50%)
 Frame = -2

Query: 331 VWELDWSTKMWREVARAPSQMCKHMLEEAMESRKAGLTPVKFAGHAELVVVMASGSHRAL 152
           +WEL+ ST  W E+ R P  +CK  L+   +SR      V   GH +L+ + +     AL
Sbjct: 269 IWELEQSTMNWVEIVRMPHTLCKRFLK---DSRNGDFMCV---GHNDLICLTSYKCPHAL 322

Query: 151 QFDVIEERWTWL 116
            +D  +  W W+
Sbjct: 323 IYDFSKRSWRWV 334


>tr|Q6QVX3|Q6QVX3_VEROI Fimbriata (Fragment) OS=Verbena officinalis
           GN=FIM PE=2 SV=1
          Length = 369

 Score = 43.9 bits (102), Expect = 0.006
 Identities = 21/72 (29%), Positives = 35/72 (48%)
 Frame = -2

Query: 331 VWELDWSTKMWREVARAPSQMCKHMLEEAMESRKAGLTPVKFAGHAELVVVMASGSHRAL 152
           +W L     MW E+ R P Q+     +  +E+ +          H + VV++  GS +AL
Sbjct: 249 LWTLQDCGSMWVEIERMPQQLYNQFAD--IEAGRG----FNCVAHGDFVVILIKGSDKAL 302

Query: 151 QFDVIEERWTWL 116
            FD + +RW W+
Sbjct: 303 LFDFVGKRWVWI 314


>tr|Q6QVX0|Q6QVX0_PAUTO Fimbriata (Fragment) OS=Paulownia tomentosa
           GN=FIM PE=2 SV=1
          Length = 362

 Score = 43.5 bits (101), Expect = 0.008
 Identities = 22/72 (30%), Positives = 32/72 (44%)
 Frame = -2

Query: 331 VWELDWSTKMWREVARAPSQMCKHMLEEAMESRKAGLTPVKFAGHAELVVVMASGSHRAL 152
           +W L     MW E+ R P Q+     E        G        H + VV++  GS +AL
Sbjct: 248 LWTLQECGTMWVEIERMPQQLYNQFAEIE------GGHGFNCVAHGKFVVILIKGSDKAL 301

Query: 151 QFDVIEERWTWL 116
            FD + +RW W+
Sbjct: 302 LFDFLVKRWVWI 313


>tr|Q9ZTZ0|Q9ZTZ0_PEA Stamina pistilloidia OS=Pisum sativum GN=Stp
           PE=2 SV=1
          Length = 443

 Score = 42.0 bits (97), Expect = 0.022
 Identities = 21/72 (29%), Positives = 34/72 (47%)
 Frame = -2

Query: 331 VWELDWSTKMWREVARAPSQMCKHMLEEAMESRKAGLTPVKFAGHAELVVVMASGSHRAL 152
           VW L     +W E  R P Q+     +  ME+        +  G+ E +V+M  GS + L
Sbjct: 338 VWSLQGCGNVWVETERMPQQLYVQFAD--MENGNG----FECVGNGEFIVIMIKGSDKGL 391

Query: 151 QFDVIEERWTWL 116
            +D+  +RW W+
Sbjct: 392 VYDIGRKRWQWI 403


>tr|Q84L18|Q84L18_PEA Stp-h4 OS=Pisum sativum PE=4 SV=1
          Length = 443

 Score = 42.0 bits (97), Expect = 0.022
 Identities = 21/72 (29%), Positives = 34/72 (47%)
 Frame = -2

Query: 331 VWELDWSTKMWREVARAPSQMCKHMLEEAMESRKAGLTPVKFAGHAELVVVMASGSHRAL 152
           VW L     +W E  R P Q+     +  ME+        +  G+ E +V+M  GS + L
Sbjct: 338 VWSLQGCGSVWVETERMPQQLYVQFAD--MENGNG----FECVGNGEFIVIMIKGSDKGL 391

Query: 151 QFDVIEERWTWL 116
            +D+  +RW W+
Sbjct: 392 VYDIGRKRWQWI 403


>tr|Q84JN4|Q84JN4_PEA Stp-h2 (Stp-h3) OS=Pisum sativum PE=4 SV=1
          Length = 441

 Score = 42.0 bits (97), Expect = 0.022
 Identities = 21/72 (29%), Positives = 34/72 (47%)
 Frame = -2

Query: 331 VWELDWSTKMWREVARAPSQMCKHMLEEAMESRKAGLTPVKFAGHAELVVVMASGSHRAL 152
           VW L     +W E  R P Q+     +  ME+        +  G+ E +V+M  GS + L
Sbjct: 336 VWSLQGCGSVWVETERMPQQLYVQFAD--MENGNG----FECVGNGEFIVIMIKGSDKGL 389

Query: 151 QFDVIEERWTWL 116
            +D+  +RW W+
Sbjct: 390 VYDIGRKRWQWI 401


>tr|B6E0Z1|B6E0Z1_CAPAN ANANTHA OS=Capsicum annuum GN=AN PE=2 SV=1
          Length = 454

 Score = 41.2 bits (95), Expect = 0.038
 Identities = 26/73 (35%), Positives = 36/73 (49%), Gaps = 1/73 (1%)
 Frame = -2

Query: 331 VWELDWSTKMWREVARAPSQMCKHMLEEAMESRKAGLTPVKFAGHAELVVVMA-SGSHRA 155
           +W L     MW E+ R P Q+    L+ A      G   V   GH E VV+M  + S +A
Sbjct: 327 LWALQDCGTMWVEIERMPQQL---YLQFAELENGQGFNCV---GHGEYVVIMIKNNSDKA 380

Query: 154 LQFDVIEERWTWL 116
           L FD  ++RW W+
Sbjct: 381 LLFDFCKKRWLWI 393