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AcEST | BlastX Result : Swiss-Prot | BlastX Result : TrEMBL | AcESTcontig | About Libraries
NBDC - LSDB Archive
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AcEST | BlastX Result : Swiss-Prot | BlastX Result : TrEMBL | AcESTcontig | About Libraries
BP918524
Clone id YMU001_000114_E06
Library
Length 509
Definition Adiantum capillus-veneris mRNA. clone: YMU001_000114_E06.
Accession
Tissue type prothallium
Developmental stage -
Contig ID -
Sequence 
AAGGGGAACAGCTAGACAATAACTTGGTCGTTGCTATTATTGCAGTGAAGAAGGGCATTA
TGCACTAGATTGCCCACATCTACCAAGAGAAAGGAGAGGCATGTATCCACTATTCGGAAG
AGTGAGAGGACAGGGACAGCTCAACGCGCAAAGAGAGCATCCGAGTGATAGTCTTGTGCC
TCCCGCTCCTTAAGGTAATGAAAAAGTCCATCGTGTTAACATAAATAGCGGGAGACCAGA
GCGCGCAATGGCAAAGGGAAAGTTGATGAAGTGTAAAGAGCCGGTGGAGACAAGAAAAAG
AAGAAGGGGGCATTAAATCAAGCAATCCAACTACCAGCTTGTAATGGATCATCTAGAATA
TGAGTTGGTGAGTGACGTCAAGAGCCACAAGGCTAATGTTACTTTCAATGAGTTTCTTGC
TTTAAATCCTAAGTTGCGACATCATTGGTCTACTAGTCCTAGTACCAGTCTCCCACAAAA
AAAGCAAGAGTGCAAATTGTGGAGAACCT
■■Homology search results ■■ -
sp_hit_id P03334
Definition sp|P03334|GAG_MSVMO Gag polyprotein OS=Moloney murine sarcoma virus
Align length 27
Score (bit) 39.7
E-value 0.008
Report 
BLASTX 2.2.19 [Nov-02-2008]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= BP918524|Adiantum capillus-veneris mRNA, clone:
YMU001_000114_E06.
         (509 letters)

Database: uniprot_sprot.fasta 
           412,525 sequences; 148,809,765 total letters

Searching..................................................done



                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

sp|P03334|GAG_MSVMO Gag polyprotein OS=Moloney murine sarcoma vi...    40   0.008
sp|P11269|GAG_MLVRD Gag polyprotein OS=Radiation murine leukemia...    39   0.014
sp|P03332|GAG_MLVMO Gag polyprotein OS=Moloney murine leukemia v...    39   0.014
sp|P21435|GAG_MLVHO Gag polyprotein OS=Hortulanus murine leukemi...    39   0.014
sp|P26805|GAG_MLVFP Gag polyprotein OS=Friend murine leukemia vi...    39   0.014
sp|P26806|GAG_MLVFF Gag polyprotein OS=Friend murine leukemia vi...    39   0.014
sp|P26807|GAG_MLVF5 Gag polyprotein OS=Friend murine leukemia vi...    39   0.014
sp|P23090|GAG_MLVDU Gag polyprotein OS=Duplan murine leukemia vi...    39   0.014
sp|P29168|GAG_MLVDE Gag polyprotein OS=Murine leukemia virus (st...    39   0.014
sp|P27460|GAG_MLVCB Gag polyprotein OS=Cas-Br-E murine leukemia ...    39   0.014
sp|P29167|GAG_MLVBM Gag polyprotein OS=Murine leukemia virus (st...    39   0.014
sp|P03336|GAG_MLVAV Gag polyprotein OS=AKV murine leukemia virus...    39   0.014
sp|Q8BL97|SFRS7_MOUSE Splicing factor, arginine/serine-rich 7 OS...    37   0.041
sp|Q16629|SFRS7_HUMAN Splicing factor, arginine/serine-rich 7 OS...    37   0.041
sp|Q3T106|SFRS7_BOVIN Splicing factor, arginine/serine-rich 7 OS...    37   0.041
sp|P03341|GAG_BAEVM Gag polyprotein OS=Baboon endogenous virus (...    35   0.16 
sp|P10262|GAG_FLV Gag polyprotein OS=Feline leukemia virus GN=ga...    35   0.27 
sp|P09519|CAPSD_FMVD Probable capsid protein OS=Figwort mosaic v...    34   0.46 
sp|Q7TD09|CAPSD_CYLCV Capsid protein OS=Cestrum yellow leaf curl...    33   0.59 
sp|B2RVL6|ZCH24_MOUSE Zinc finger CCHC domain-containing protein...    33   0.78 
sp|Q8HXK7|ZCH24_MACFA Zinc finger CCHC domain-containing protein...    33   0.78 
sp|Q8N2G6|ZCH24_HUMAN Zinc finger CCHC domain-containing protein...    33   0.78 
sp|Q04832|HEXP_LEIMA DNA-binding protein HEXBP OS=Leishmania maj...    33   1.0  
sp|Q5ZIP4|XRN2_CHICK 5'-3' exoribonuclease 2 OS=Gallus gallus GN...    32   1.3  
sp|Q9VF89|RM09_DROME 39S ribosomal protein L9, mitochondrial OS=...    32   1.7  
sp|Q0DM51|RH3_ORYSJ DEAD-box ATP-dependent RNA helicase 3 OS=Ory...    32   1.7  
sp|O76743|GLH4_CAEEL ATP-dependent RNA helicase glh-4 OS=Caenorh...    32   1.7  
sp|P03344|GAG_BLVJ Gag polyprotein OS=Bovine leukemia virus (iso...    32   1.7  
sp|P25058|GAG_BLVAU Gag polyprotein OS=Bovine leukemia virus (is...    32   1.7  
sp|P17017|ZNF14_HUMAN Zinc finger protein 14 OS=Homo sapiens GN=...    32   2.3  

>sp|P03334|GAG_MSVMO Gag polyprotein OS=Moloney murine sarcoma virus
           GN=gag PE=1 SV=3
          Length = 538

 Score = 39.7 bits (91), Expect = 0.008
 Identities = 15/27 (55%), Positives = 18/27 (66%)
 Frame = +2

Query: 29  RCYYCSEEGHYALDCPHLPRERRGMYP 109
           +C YC E+GH+A DCP  PR  RG  P
Sbjct: 503 QCTYCEEQGHWAKDCPRRPRGPRGPRP 529


>sp|P11269|GAG_MLVRD Gag polyprotein OS=Radiation murine leukemia
           virus GN=gag PE=1 SV=3
          Length = 537

 Score = 38.9 bits (89), Expect = 0.014
 Identities = 15/27 (55%), Positives = 18/27 (66%)
 Frame = +2

Query: 29  RCYYCSEEGHYALDCPHLPRERRGMYP 109
           +C YC E+GH+A DCP  PR  RG  P
Sbjct: 502 QCAYCKEKGHWAKDCPKKPRGPRGPRP 528


>sp|P03332|GAG_MLVMO Gag polyprotein OS=Moloney murine leukemia
           virus GN=gag PE=1 SV=4
          Length = 538

 Score = 38.9 bits (89), Expect = 0.014
 Identities = 15/27 (55%), Positives = 18/27 (66%)
 Frame = +2

Query: 29  RCYYCSEEGHYALDCPHLPRERRGMYP 109
           +C YC E+GH+A DCP  PR  RG  P
Sbjct: 503 QCAYCKEKGHWAKDCPKKPRGPRGPRP 529


>sp|P21435|GAG_MLVHO Gag polyprotein OS=Hortulanus murine leukemia
           virus GN=gag PE=3 SV=3
          Length = 540

 Score = 38.9 bits (89), Expect = 0.014
 Identities = 15/27 (55%), Positives = 18/27 (66%)
 Frame = +2

Query: 29  RCYYCSEEGHYALDCPHLPRERRGMYP 109
           +C YC E+GH+A DCP  PR  RG  P
Sbjct: 505 QCAYCKEKGHWAKDCPKKPRGPRGPRP 531


>sp|P26805|GAG_MLVFP Gag polyprotein OS=Friend murine leukemia virus
           (isolate PVC-211) GN=gag PE=3 SV=3
          Length = 538

 Score = 38.9 bits (89), Expect = 0.014
 Identities = 15/27 (55%), Positives = 18/27 (66%)
 Frame = +2

Query: 29  RCYYCSEEGHYALDCPHLPRERRGMYP 109
           +C YC E+GH+A DCP  PR  RG  P
Sbjct: 503 QCAYCKEKGHWARDCPKKPRGPRGPRP 529


>sp|P26806|GAG_MLVFF Gag polyprotein OS=Friend murine leukemia virus
           (isolate FB29) GN=gag PE=1 SV=3
          Length = 538

 Score = 38.9 bits (89), Expect = 0.014
 Identities = 15/27 (55%), Positives = 18/27 (66%)
 Frame = +2

Query: 29  RCYYCSEEGHYALDCPHLPRERRGMYP 109
           +C YC E+GH+A DCP  PR  RG  P
Sbjct: 503 QCAYCKEKGHWARDCPKKPRGPRGPRP 529


>sp|P26807|GAG_MLVF5 Gag polyprotein OS=Friend murine leukemia virus
           (isolate 57) GN=gag PE=3 SV=3
          Length = 539

 Score = 38.9 bits (89), Expect = 0.014
 Identities = 15/27 (55%), Positives = 18/27 (66%)
 Frame = +2

Query: 29  RCYYCSEEGHYALDCPHLPRERRGMYP 109
           +C YC E+GH+A DCP  PR  RG  P
Sbjct: 504 QCAYCKEKGHWARDCPKKPRGPRGPRP 530


>sp|P23090|GAG_MLVDU Gag polyprotein OS=Duplan murine leukemia virus
           GN=gag PE=3 SV=3
          Length = 529

 Score = 38.9 bits (89), Expect = 0.014
 Identities = 15/27 (55%), Positives = 18/27 (66%)
 Frame = +2

Query: 29  RCYYCSEEGHYALDCPHLPRERRGMYP 109
           +C YC E+GH+A DCP  PR  RG  P
Sbjct: 494 QCAYCKEKGHWAKDCPKKPRGPRGPRP 520


>sp|P29168|GAG_MLVDE Gag polyprotein OS=Murine leukemia virus
           (strain DEF27) GN=gag PE=3 SV=3
          Length = 536

 Score = 38.9 bits (89), Expect = 0.014
 Identities = 15/27 (55%), Positives = 18/27 (66%)
 Frame = +2

Query: 29  RCYYCSEEGHYALDCPHLPRERRGMYP 109
           +C YC E+GH+A DCP  PR  RG  P
Sbjct: 501 QCAYCKEKGHWAKDCPKKPRGPRGPRP 527


>sp|P27460|GAG_MLVCB Gag polyprotein OS=Cas-Br-E murine leukemia
           virus GN=gag PE=3 SV=3
          Length = 536

 Score = 38.9 bits (89), Expect = 0.014
 Identities = 15/27 (55%), Positives = 18/27 (66%)
 Frame = +2

Query: 29  RCYYCSEEGHYALDCPHLPRERRGMYP 109
           +C YC E+GH+A DCP  PR  RG  P
Sbjct: 501 QCAYCKEKGHWAKDCPKKPRGPRGPRP 527
tr_hit_id Q83371
Definition tr|Q83371|Q83371_MLVMO Reverse transcriptase (Fragment) OS=Moloney murine leukemia virus
Align length 42
Score (bit) 41.2
E-value 0.029
Report 
BLASTX 2.2.19 [Nov-02-2008]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= BP918524|Adiantum capillus-veneris mRNA, clone:
YMU001_000114_E06.
         (509 letters)

Database: uniprot_trembl.fasta 
           7,341,751 sequences; 2,391,615,440 total letters

Searching..................................................done



                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

tr|Q83371|Q83371_MLVMO Reverse transcriptase (Fragment) OS=Molon...    41   0.029
tr|Q2F7J3|Q2F7J3_9GAMR Putative gag-pro-pol polyprotein OS=Xenot...    41   0.029
tr|Q2F7J0|Q2F7J0_9GAMR Putative gag-pro-pol polyprotein OS=Xenot...    41   0.029
tr|Q27IE0|Q27IE0_9GAMR Putative gag-pro-pol polyprotein OS=Xenot...    41   0.029
tr|A1Z651|A1Z651_9GAMR Putative gag-pro-pol polyprotein OS=Xenot...    41   0.029
tr|Q9E7M1|Q9E7M1_9GAMR Putative gag-pro-pol polyprotein OS=DG-75...    41   0.038
tr|Q6VG41|Q6VG41_SIVCZ Gag polyprotein OS=Simian immunodeficienc...    40   0.050
tr|O39736|O39736_MLVFR Gag polyprotein OS=Friend murine leukemia...    40   0.050
tr|O39735|O39735_MLVFR Gag-pol polyprotein (Precursor protein) O...    40   0.050
tr|Q75H43|Q75H43_ORYSJ Putative uncharacterized protein OSJNBa00...    40   0.085
tr|Q5PYI3|Q5PYI3_9GAMR Gag-pol polyprotein OS=Murine leukemia vi...    39   0.11 
tr|O92808|O92808_MLVMO Pr180 OS=Moloney murine leukemia virus GN...    39   0.11 
tr|O56222|O56222_MSVMO Pr65 OS=Moloney murine sarcoma virus GN=g...    39   0.11 
tr|A7UJ21|A7UJ21_9GAMR Gag-pro-pol polyprotein OS=Murine leukemi...    39   0.11 
tr|A7UJ20|A7UJ20_9GAMR Gag-pro-pol polyprotein OS=Murine leukemi...    39   0.11 
tr|A7UJ19|A7UJ19_9GAMR Gag-pro-pol polyprotein OS=Murine leukemi...    39   0.11 
tr|Q5ZMI0|Q5ZMI0_CHICK Putative uncharacterized protein OS=Gallu...    39   0.11 
tr|B5FZ53|B5FZ53_TAEGU Putative splicing factor arginine/serine-...    39   0.11 
tr|Q4KLJ1|Q4KLJ1_RAT Splicing factor, arginine/serine-rich 7 OS=...    39   0.11 
tr|A6YLN1|A6YLN1_CEREL Arginine/serine-rich 7 splicing factor (F...    39   0.11 
tr|Q9YKA0|Q9YKA0_9GAMR Gag polypeptide OS=Murine leukemia virus ...    39   0.15 
tr|Q9WJP4|Q9WJP4_MLVMO Pr65 OS=Moloney murine leukemia virus GN=...    39   0.15 
tr|Q9WHV6|Q9WHV6_9GAMR Gag protein OS=Murine leukemia virus PE=4...    39   0.15 
tr|Q9Q9A6|Q9Q9A6_9GAMR Putative gag polyprotein OS=Murine leukem...    39   0.15 
tr|Q9J8E2|Q9J8E2_9GAMR Putative gag-pol polyprotein OS=Murine le...    39   0.15 
tr|Q900B1|Q900B1_9GAMR Gag protein OS=Murine leukemia virus GN=g...    39   0.15 
tr|Q8UN02|Q8UN02_MLVMO GPr80 glycosylated Gag polyprotein OS=Mol...    39   0.15 
tr|Q8UN01|Q8UN01_MLVMO Pr65 Gag polyprotein OS=Moloney murine le...    39   0.15 
tr|Q8UN00|Q8UN00_MLVMO Pr180 Gag-Pro-Pol polyprotein OS=Moloney ...    39   0.15 
tr|Q86963|Q86963_9RETR Gag OS=Murine AIDS virus-related provirus...    39   0.15 

>tr|Q83371|Q83371_MLVMO Reverse transcriptase (Fragment) OS=Moloney
           murine leukemia virus GN=pol PE=4 SV=1
          Length = 560

 Score = 41.2 bits (95), Expect = 0.029
 Identities = 20/42 (47%), Positives = 23/42 (54%), Gaps = 5/42 (11%)
 Frame = +2

Query: 29  RCYYCSEEGHYALDCPHLPRERRGMYP-----LFGRVRGQGQ 139
           +C YC E+GH+A DCP  PR  RG  P       G   GQGQ
Sbjct: 193 QCAYCKEKGHWAKDCPKKPRGPRGPRPQTSLLTLGDXGGQGQ 234


>tr|Q2F7J3|Q2F7J3_9GAMR Putative gag-pro-pol polyprotein
           OS=Xenotropic MuLV-related virus VP35 GN=gag-pro-pol
           PE=4 SV=1
          Length = 1733

 Score = 41.2 bits (95), Expect = 0.029
 Identities = 20/42 (47%), Positives = 23/42 (54%), Gaps = 5/42 (11%)
 Frame = +2

Query: 29  RCYYCSEEGHYALDCPHLPRERRGMYP-----LFGRVRGQGQ 139
           +C YC E+GH+A DCP  PR  RG  P       G   GQGQ
Sbjct: 501 QCAYCKEKGHWAKDCPKKPRGPRGPRPQTSLLTLGDXGGQGQ 542


>tr|Q2F7J0|Q2F7J0_9GAMR Putative gag-pro-pol polyprotein
           OS=Xenotropic MuLV-related virus VP42 GN=gag-pro-pol
           PE=4 SV=1
          Length = 1733

 Score = 41.2 bits (95), Expect = 0.029
 Identities = 20/42 (47%), Positives = 23/42 (54%), Gaps = 5/42 (11%)
 Frame = +2

Query: 29  RCYYCSEEGHYALDCPHLPRERRGMYP-----LFGRVRGQGQ 139
           +C YC E+GH+A DCP  PR  RG  P       G   GQGQ
Sbjct: 501 QCAYCKEKGHWAKDCPKKPRGPRGPRPQTSLLTLGDXGGQGQ 542


>tr|Q27IE0|Q27IE0_9GAMR Putative gag-pro-pol polyprotein
           OS=Xenotropic MuLV-related virus VP62 GN=gag-pro-pol
           PE=4 SV=1
          Length = 1733

 Score = 41.2 bits (95), Expect = 0.029
 Identities = 20/42 (47%), Positives = 23/42 (54%), Gaps = 5/42 (11%)
 Frame = +2

Query: 29  RCYYCSEEGHYALDCPHLPRERRGMYP-----LFGRVRGQGQ 139
           +C YC E+GH+A DCP  PR  RG  P       G   GQGQ
Sbjct: 501 QCAYCKEKGHWAKDCPKKPRGPRGPRPQTSLLTLGDXGGQGQ 542


>tr|A1Z651|A1Z651_9GAMR Putative gag-pro-pol polyprotein
           OS=Xenotropic MuLV-related virus VP62 GN=gag-pro-pol
           PE=4 SV=1
          Length = 1733

 Score = 41.2 bits (95), Expect = 0.029
 Identities = 20/42 (47%), Positives = 23/42 (54%), Gaps = 5/42 (11%)
 Frame = +2

Query: 29  RCYYCSEEGHYALDCPHLPRERRGMYP-----LFGRVRGQGQ 139
           +C YC E+GH+A DCP  PR  RG  P       G   GQGQ
Sbjct: 501 QCAYCKEKGHWAKDCPKKPRGPRGPRPQTSLLTLGDXGGQGQ 542


>tr|Q9E7M1|Q9E7M1_9GAMR Putative gag-pro-pol polyprotein OS=DG-75
           Murine leukemia virus PE=4 SV=1
          Length = 1733

 Score = 40.8 bits (94), Expect = 0.038
 Identities = 20/42 (47%), Positives = 23/42 (54%), Gaps = 5/42 (11%)
 Frame = +2

Query: 29  RCYYCSEEGHYALDCPHLPRERRGMYP-----LFGRVRGQGQ 139
           +C YC E+GH+A DCP  PR  RG  P       G   GQGQ
Sbjct: 501 QCAYCKEKGHWAKDCPKKPRGPRGPRPQTSLLTLGDQGGQGQ 542


>tr|Q6VG41|Q6VG41_SIVCZ Gag polyprotein OS=Simian immunodeficiency
           virus (isolate CPZ GAB1) PE=4 SV=1
          Length = 510

 Score = 40.4 bits (93), Expect = 0.050
 Identities = 24/79 (30%), Positives = 34/79 (43%), Gaps = 3/79 (3%)
 Frame = +2

Query: 29  RCYYCSEEGHYALDCPHLPRERRGMYPL---FGRVRGQGQLNAQREHPSDSLVPPAP*GN 199
           +CY C + GH A DCP  P++ +G+  L   FG  +G          PS    P  P G 
Sbjct: 417 KCYNCGQPGHLAKDCPQPPKQNKGVNFLGNPFGPKKGPRNFPLTSVQPS---APTLPAGT 473

Query: 200 EKVHRVNINSGRPERAMAK 256
            +   +N   G P+    K
Sbjct: 474 AEPVNLNQEIGSPKTGTPK 492


>tr|O39736|O39736_MLVFR Gag polyprotein OS=Friend murine leukemia
           virus GN=gag PE=4 SV=2
          Length = 538

 Score = 40.4 bits (93), Expect = 0.050
 Identities = 15/27 (55%), Positives = 19/27 (70%)
 Frame = +2

Query: 29  RCYYCSEEGHYALDCPHLPRERRGMYP 109
           +C YC E+GH+A DCP  PR  RG+ P
Sbjct: 503 QCAYCKEKGHWARDCPKKPRGPRGLRP 529


>tr|O39735|O39735_MLVFR Gag-pol polyprotein (Precursor protein)
           OS=Friend murine leukemia virus PE=4 SV=1
          Length = 1738

 Score = 40.4 bits (93), Expect = 0.050
 Identities = 15/27 (55%), Positives = 19/27 (70%)
 Frame = +2

Query: 29  RCYYCSEEGHYALDCPHLPRERRGMYP 109
           +C YC E+GH+A DCP  PR  RG+ P
Sbjct: 503 QCAYCKEKGHWARDCPKKPRGPRGLRP 529


>tr|Q75H43|Q75H43_ORYSJ Putative uncharacterized protein
           OSJNBa0006O14.10 (Putative uncharacterized protein
           OSJNBa0010H19.3) OS=Oryza sativa subsp. japonica
           GN=OSJNBa0006O14.10 PE=4 SV=1
          Length = 214

 Score = 39.7 bits (91), Expect = 0.085
 Identities = 20/40 (50%), Positives = 23/40 (57%)
 Frame = +2

Query: 32  CYYCSEEGHYALDCPHLPRERRGMYPLFGRVRGQGQLNAQ 151
           CY CSEEGHY+ DCP  PR+ R   P F +  G    N Q
Sbjct: 162 CYNCSEEGHYSRDCPQ-PRQNRP--PHFRQFTGSKHANRQ 198