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AcEST | BlastX Result : Swiss-Prot | BlastX Result : TrEMBL | AcESTcontig | About Libraries
NBDC - LSDB Archive
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AcEST | BlastX Result : Swiss-Prot | BlastX Result : TrEMBL | AcESTcontig | About Libraries
BP918529
Clone id YMU001_000114_E12
Library
Length 549
Definition Adiantum capillus-veneris mRNA. clone: YMU001_000114_E12.
Accession
Tissue type prothallium
Developmental stage -
Contig ID -
Sequence 
CCACTGGGTTTCTCCCGTGGTAGAGAGCTTCCTACGGATAAGTTGTACAAGGAGAGGAGG
AAGGTCCTCCACTCGCTTCCCAAAACAGCGAGGGCAGTAGCCGAACCACTCTTCTCTAGG
ACATGGGAATCTTCTTACCACTTCTTCTTCTGGATTGTCGAAGTGGATTGGTAGCACTCG
CATGCGTCGTGCAAATCGATAGGCAACCTTCCGCCGCTTAGCTTCGGATGGCTTCTTCTT
TGACAAAGTGGGTACAGCCCGGCTTTCTGAGCTTGAAGCACTTGCTTGGCCAGATGCTTC
TCCCTTTGGGGTCATGTGTTTCTAGACTGGCTTATCTTCTCCTTGCCTTTGGCTCGAGCA
GCCCCTTTAGGACACTTTGGAGTTATATCTGTGTCTGCAGCTTCTTTAGGGAAAAGAGGT
CTCACCGTTTGCTTCCCTTCCTTGACGTGAATGATTTCTTCGCGATGAATGTCAATGTAG
ATGACTTCAGCCCTTTCGCTGCCTTCGTTGTTGCTGGCACTCATTGACAGTGTGCCTTGG
TTGACAACA
■■Homology search results ■■ -
sp_hit_id Q7VS43
Definition sp|Q7VS43|GPMA_BORPE 2,3-bisphosphoglycerate-dependent phosphoglycerate mutase OS=Bordetella pertussis
Align length 81
Score (bit) 30.8
E-value 4.5
Report 
BLASTX 2.2.19 [Nov-02-2008]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= BP918529|Adiantum capillus-veneris mRNA, clone:
YMU001_000114_E12.
         (549 letters)

Database: uniprot_sprot.fasta 
           412,525 sequences; 148,809,765 total letters

Searching..................................................done



                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

sp|Q7VS43|GPMA_BORPE 2,3-bisphosphoglycerate-dependent phosphogl...    31   4.5  
sp|Q7W1Q6|GPMA_BORPA 2,3-bisphosphoglycerate-dependent phosphogl...    31   4.5  
sp|Q7WQN2|GPMA_BORBR 2,3-bisphosphoglycerate-dependent phosphogl...    31   4.5  
sp|Q9JI69|ORC1_CRIGR Origin recognition complex subunit 1 OS=Cri...    30   5.9  
sp|Q8K2F0|BRD3_MOUSE Bromodomain-containing protein 3 OS=Mus mus...    30   5.9  

>sp|Q7VS43|GPMA_BORPE 2,3-bisphosphoglycerate-dependent
           phosphoglycerate mutase OS=Bordetella pertussis GN=gpmA
           PE=3 SV=1
          Length = 250

 Score = 30.8 bits (68), Expect = 4.5
 Identities = 22/81 (27%), Positives = 35/81 (43%), Gaps = 6/81 (7%)
 Frame = -2

Query: 230 HPKLSG--GRLPIDLHDACECYQSTSTIQKKKW*EDSHVLEKSGSATALAVLGSEWRTFL 57
           HP+  G   ++P D   A EC + T       W E      ++G    +A  G+  R  +
Sbjct: 131 HPRFDGRYAKIPADQLPATECLKDTVARVLPFWNESIAPAIRAGRRVLVAAHGNSLRALI 190

Query: 56  LSLYNLS----VGSSLPREKP 6
             L N+S    VG ++P  +P
Sbjct: 191 KHLDNVSDDDIVGVNIPTGQP 211


>sp|Q7W1Q6|GPMA_BORPA 2,3-bisphosphoglycerate-dependent
           phosphoglycerate mutase OS=Bordetella parapertussis
           GN=gpmA PE=3 SV=1
          Length = 250

 Score = 30.8 bits (68), Expect = 4.5
 Identities = 22/81 (27%), Positives = 35/81 (43%), Gaps = 6/81 (7%)
 Frame = -2

Query: 230 HPKLSG--GRLPIDLHDACECYQSTSTIQKKKW*EDSHVLEKSGSATALAVLGSEWRTFL 57
           HP+  G   ++P D   A EC + T       W E      ++G    +A  G+  R  +
Sbjct: 131 HPRFDGRYAKIPADQLPATECLKDTVARVLPFWNESIAPAIRAGRRVLVAAHGNSLRALI 190

Query: 56  LSLYNLS----VGSSLPREKP 6
             L N+S    VG ++P  +P
Sbjct: 191 KHLDNVSDDDIVGVNIPTGQP 211


>sp|Q7WQN2|GPMA_BORBR 2,3-bisphosphoglycerate-dependent
           phosphoglycerate mutase OS=Bordetella bronchiseptica
           GN=gpmA PE=3 SV=1
          Length = 250

 Score = 30.8 bits (68), Expect = 4.5
 Identities = 22/81 (27%), Positives = 35/81 (43%), Gaps = 6/81 (7%)
 Frame = -2

Query: 230 HPKLSG--GRLPIDLHDACECYQSTSTIQKKKW*EDSHVLEKSGSATALAVLGSEWRTFL 57
           HP+  G   ++P D   A EC + T       W E      ++G    +A  G+  R  +
Sbjct: 131 HPRFDGRYAKIPADQLPATECLKDTVARVLPFWNESIAPAIRAGRRVLVAAHGNSLRALI 190

Query: 56  LSLYNLS----VGSSLPREKP 6
             L N+S    VG ++P  +P
Sbjct: 191 KHLDNVSDDDIVGVNIPTGQP 211


>sp|Q9JI69|ORC1_CRIGR Origin recognition complex subunit 1
           OS=Cricetulus griseus GN=ORC1L PE=2 SV=1
          Length = 850

 Score = 30.4 bits (67), Expect = 5.9
 Identities = 30/107 (28%), Positives = 44/107 (41%), Gaps = 5/107 (4%)
 Frame = -2

Query: 488 EVIYIDIHREEIIHVKEGKQT--VRPLFPKEAA---DTDITPKCPKGAARAKGKEKISQS 324
           EVI +D   E+ + VK    T    PL P+  A     + +PKC K     K K   + S
Sbjct: 142 EVIPMDQKSEDTLFVKLSWNTKNFEPLSPEVLAALKKLEDSPKCQK-PLEGKSKNVKNPS 200

Query: 323 RNT*PQREKHLAKQVLQAQKAGLYPLCQRRSHPKLSGGRLPIDLHDA 183
            N   Q  K +      ++       CQ  +HP     R P++L D+
Sbjct: 201 WNATEQMVKRIESSHSTSKS------CQTSAHPVSPNARKPLELSDS 241


>sp|Q8K2F0|BRD3_MOUSE Bromodomain-containing protein 3 OS=Mus
           musculus GN=Brd3 PE=1 SV=2
          Length = 726

 Score = 30.4 bits (67), Expect = 5.9
 Identities = 25/109 (22%), Positives = 47/109 (43%)
 Frame = -2

Query: 548 VVNQGTLSMSASNNEGSERAEVIYIDIHREEIIHVKEGKQTVRPLFPKEAADTDITPKCP 369
           +V++G  S  +S    S+       D   E    + E ++ ++ +  + AA +      P
Sbjct: 431 IVSKGAESSRSSEESSSDSGSS---DSEEERATRLAELQEQLKAVHEQLAALSQAPVNKP 487

Query: 368 KGAARAKGKEKISQSRNT*PQREKHLAKQVLQAQKAGLYPLCQRRSHPK 222
           K     K KEK  + ++   ++EKH AK   + +KA   P  ++    K
Sbjct: 488 KKKKEKKEKEKKKKDKDKDKEKEKHKAKSE-EEKKAKAAPAAKQAQQKK 535
tr_hit_id Q944U0
Definition tr|Q944U0|Q944U0_ORYSA Ethylene receptor-like protein 1 OS=Oryza sativa
Align length 27
Score (bit) 34.7
E-value 3.4
Report 
BLASTX 2.2.19 [Nov-02-2008]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= BP918529|Adiantum capillus-veneris mRNA, clone:
YMU001_000114_E12.
         (549 letters)

Database: uniprot_trembl.fasta 
           7,341,751 sequences; 2,391,615,440 total letters

Searching..................................................done



                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

tr|Q944U0|Q944U0_ORYSA Ethylene receptor-like protein 1 OS=Oryza...    35   3.4  
tr|Q8H1X1|Q8H1X1_ORYSI Putative ethylene receptor OS=Oryza sativ...    35   3.4  
tr|Q7XX84|Q7XX84_ORYSJ cDNA clone:J023048C17, full insert sequen...    35   3.4  
tr|Q5H9Y0|Q5H9Y0_ORYSA P0650D04.3 protein OS=Oryza sativa GN=P06...    35   3.4  
tr|Q0JF30|Q0JF30_ORYSJ Os04g0169100 protein (Fragment) OS=Oryza ...    35   3.4  
tr|A3C585|A3C585_ORYSJ Putative uncharacterized protein OS=Oryza...    35   3.4  
tr|A2XQB6|A2XQB6_ORYSI Putative uncharacterized protein OS=Oryza...    35   3.4  
tr|A0L9Z9|A0L9Z9_MAGSM HAD-superfamily hydrolase, subfamily IIB ...    34   4.4  
tr|B6PQ37|B6PQ37_BRAFL Putative uncharacterized protein OS=Branc...    34   4.5  
tr|B6PMG3|B6PMG3_BRAFL Putative uncharacterized protein OS=Branc...    34   4.5  
tr|Q5DMW3|Q5DMW3_CUCME MRGH10 OS=Cucumis melo GN=MRGH10 PE=4 SV=1      34   5.8  
tr|A4QVE1|A4QVE1_MAGGR Predicted protein OS=Magnaporthe grisea G...    34   5.9  
tr|A1U316|A1U316_MARAV Phage integrase family protein OS=Marinob...    33   7.7  
tr|B0W124|B0W124_CULQU Cationic amino acid transporter OS=Culex ...    33   9.8  
tr|Q6C6D7|Q6C6D7_YARLI YALI0E10329p OS=Yarrowia lipolytica GN=YA...    33   9.8  
tr|Q2UKB0|Q2UKB0_ASPOR Histone acetyltransferases PCAF/SAGA/ADA ...    33   9.8  
tr|B8N3N1|B8N3N1_ASPFL Transcriptional regulator Ngg1, putative ...    33   9.8  

>tr|Q944U0|Q944U0_ORYSA Ethylene receptor-like protein 1 OS=Oryza
           sativa PE=2 SV=2
          Length = 763

 Score = 34.7 bits (78), Expect = 3.4
 Identities = 15/27 (55%), Positives = 16/27 (59%)
 Frame = +1

Query: 301 SLWGHVFLDWLIFSLPLARAAPLGHFG 381
           SLW  VF  WL+ SLP A AA   H G
Sbjct: 6   SLWIRVFFSWLLLSLPAAAAADFSHCG 32


>tr|Q8H1X1|Q8H1X1_ORYSI Putative ethylene receptor OS=Oryza sativa
           subsp. indica GN=ETR2 PE=2 SV=2
          Length = 763

 Score = 34.7 bits (78), Expect = 3.4
 Identities = 15/27 (55%), Positives = 16/27 (59%)
 Frame = +1

Query: 301 SLWGHVFLDWLIFSLPLARAAPLGHFG 381
           SLW  VF  WL+ SLP A AA   H G
Sbjct: 6   SLWIRVFFSWLLLSLPAAAAADFSHCG 32


>tr|Q7XX84|Q7XX84_ORYSJ cDNA clone:J023048C17, full insert sequence
           OS=Oryza sativa subsp. japonica GN=OSJNBb0089K06.20 PE=2
           SV=1
          Length = 763

 Score = 34.7 bits (78), Expect = 3.4
 Identities = 15/27 (55%), Positives = 16/27 (59%)
 Frame = +1

Query: 301 SLWGHVFLDWLIFSLPLARAAPLGHFG 381
           SLW  VF  WL+ SLP A AA   H G
Sbjct: 6   SLWIRVFFSWLLLSLPAAAAADFSHCG 32


>tr|Q5H9Y0|Q5H9Y0_ORYSA P0650D04.3 protein OS=Oryza sativa
           GN=P0650D04.3 PE=4 SV=1
          Length = 763

 Score = 34.7 bits (78), Expect = 3.4
 Identities = 15/27 (55%), Positives = 16/27 (59%)
 Frame = +1

Query: 301 SLWGHVFLDWLIFSLPLARAAPLGHFG 381
           SLW  VF  WL+ SLP A AA   H G
Sbjct: 6   SLWIRVFFSWLLLSLPAAAAADFSHCG 32


>tr|Q0JF30|Q0JF30_ORYSJ Os04g0169100 protein (Fragment) OS=Oryza
           sativa subsp. japonica GN=Os04g0169100 PE=4 SV=1
          Length = 813

 Score = 34.7 bits (78), Expect = 3.4
 Identities = 15/27 (55%), Positives = 16/27 (59%)
 Frame = +1

Query: 301 SLWGHVFLDWLIFSLPLARAAPLGHFG 381
           SLW  VF  WL+ SLP A AA   H G
Sbjct: 56  SLWIRVFFSWLLLSLPAAAAADFSHCG 82


>tr|A3C585|A3C585_ORYSJ Putative uncharacterized protein OS=Oryza
           sativa subsp. japonica GN=OsJ_030457 PE=4 SV=1
          Length = 764

 Score = 34.7 bits (78), Expect = 3.4
 Identities = 15/27 (55%), Positives = 16/27 (59%)
 Frame = +1

Query: 301 SLWGHVFLDWLIFSLPLARAAPLGHFG 381
           SLW  VF  WL+ SLP A AA   H G
Sbjct: 6   SLWIRVFFSWLLLSLPAAAAADFSHCG 32


>tr|A2XQB6|A2XQB6_ORYSI Putative uncharacterized protein OS=Oryza
           sativa subsp. indica GN=OsI_14827 PE=4 SV=1
          Length = 722

 Score = 34.7 bits (78), Expect = 3.4
 Identities = 15/27 (55%), Positives = 16/27 (59%)
 Frame = +1

Query: 301 SLWGHVFLDWLIFSLPLARAAPLGHFG 381
           SLW  VF  WL+ SLP A AA   H G
Sbjct: 6   SLWIRVFFSWLLLSLPAAAAADFSHCG 32


>tr|A0L9Z9|A0L9Z9_MAGSM HAD-superfamily hydrolase, subfamily IIB
           OS=Magnetococcus sp. (strain MC-1) GN=Mmc1_2291 PE=4
           SV=1
          Length = 264

 Score = 34.3 bits (77), Expect = 4.4
 Identities = 35/131 (26%), Positives = 55/131 (41%)
 Frame = -2

Query: 425 VRPLFPKEAADTDITPKCPKGAARAKGKEKISQSRNT*PQREKHLAKQVLQAQKAGLYPL 246
           +R   P    D  +TP+C    +R K      QS +  P  +K    + +  +  GL P+
Sbjct: 103 LRHQIPLLLRDLPLTPRCVDRQSRFK------QSYSVAPDLDKQPLMEQISVRLKGL-PI 155

Query: 245 CQRRSHPKLSGGRLPIDLHDACECYQSTSTIQKKKW*EDSHVLEKSGSATALAVLGSEWR 66
            QR S  + SG RL   +        +   +Q+    +DSH L    SA  L+V  S   
Sbjct: 156 EQRWSRDEESGTRLLNIIPSGINKLTAIRMLQQHCAIDDSHTLFAGDSANDLSVFASSVP 215

Query: 65  TFLLSLYNLSV 33
           + L+   + SV
Sbjct: 216 SILVGNADKSV 226


>tr|B6PQ37|B6PQ37_BRAFL Putative uncharacterized protein
           OS=Branchiostoma floridae GN=BRAFLDRAFT_109623 PE=4 SV=1
          Length = 333

 Score = 34.3 bits (77), Expect = 4.5
 Identities = 20/58 (34%), Positives = 26/58 (44%), Gaps = 2/58 (3%)
 Frame = -1

Query: 252 PTLSKKKPSEAKRRKVAYRFAR--RMRVLPIHFDNPEEEVVRRFPCPREEWFGYCPRC 85
           P L KK P   KR + A    R  R+R++P   D   E    R   P  ++ G CP C
Sbjct: 265 PELCKKAPGRGKRERCAVCLHRKSRVRLVPCGHDRLCERCATRIMDPDYQYSGICPLC 322


>tr|B6PMG3|B6PMG3_BRAFL Putative uncharacterized protein
           OS=Branchiostoma floridae GN=BRAFLDRAFT_108719 PE=4 SV=1
          Length = 313

 Score = 34.3 bits (77), Expect = 4.5
 Identities = 20/58 (34%), Positives = 26/58 (44%), Gaps = 2/58 (3%)
 Frame = -1

Query: 252 PTLSKKKPSEAKRRKVAYRFAR--RMRVLPIHFDNPEEEVVRRFPCPREEWFGYCPRC 85
           P L KK P   KR + A    R  R+R++P   D   E    R   P  ++ G CP C
Sbjct: 245 PELCKKAPGRGKRERCAVCLHRKSRVRLVPCGHDRLCERCATRIMDPDYQYSGICPLC 302