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NBDC - LSDB Archive
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AcEST | BlastX Result : Swiss-Prot | BlastX Result : TrEMBL | AcESTcontig | About Libraries
BP918532
Clone id YMU001_000114_F05
Library
Length 483
Definition Adiantum capillus-veneris mRNA. clone: YMU001_000114_F05.
Accession
Tissue type prothallium
Developmental stage -
Contig ID
Sequence 
CCACTCTAGAAGAACTAGAATTCTAACCTTGTGTCAAGAATTACGGACCAAGAGACAGTC
CCAGGTAGACAGTTTCTATGGGGCGTATGCCTCCCAAAGAGTAACGGAGGCGTGCAAAGG
TTTCCTCAGGCTGGACGGAAATCAGTCTACGAGTGCAAAGGCAGAAGGGAGCTTGACTGC
GAGACCTACCAGTCGAGCAGGGACGAAAGTCGGCCTTAGTGATCCGACGGTTCCAAGTGG
AAGGGCCGTCGCTCAACGGATAAAAGTTACTCTAAGGATAACAGGCTGATCTTCCCCAAG
AGTTCACATCGACGGGAAGGTTTGGCACCTCGATGTCGGCTCTTCGCCACCTGTGGCGGT
AGTACGTCCCAAGGGTTGGGCTGTTCGCCCATTAAAGCGGTACGTGAGCTGGGTTCAGAA
CGTCGTGAGACAGTTCGGTCCATATCCGGTGCGGGCGCTAGAGCATTGAGGGGACCTTTC
CCT
■■Homology search results ■■ -
sp_hit_id Q9PLI5
Definition sp|Q9PLI5|Y114_CHLMU Uncharacterized protein TC_0114 OS=Chlamydia muridarum
Align length 88
Score (bit) 95.5
E-value 1.0e-19
Report 
BLASTX 2.2.19 [Nov-02-2008]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= BP918532|Adiantum capillus-veneris mRNA, clone:
YMU001_000114_F05.
         (483 letters)

Database: uniprot_sprot.fasta 
           412,525 sequences; 148,809,765 total letters

Searching..................................................done



                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

sp|Q9PLI5|Y114_CHLMU Uncharacterized protein TC_0114 OS=Chlamydi...    96   1e-19
sp|P70906|VLP18_BORHE Variable large protein 18 OS=Borrelia herm...    34   0.40 
sp|Q23356|MIG15_CAEEL Serine/threonine-protein kinase mig-15 OS=...    31   2.6  
sp|Q5SZD1|CF141_HUMAN Uncharacterized protein C6orf141 OS=Homo s...    30   5.7  
sp|Q250N9|RPOC_DESHY DNA-directed RNA polymerase subunit beta' O...    29   9.8  
sp|O13862|RDP1_SCHPO Transcriptional activator protein rdp1 OS=S...    29   9.8  
sp|P30924|GLGB_SOLTU 1,4-alpha-glucan-branching enzyme OS=Solanu...    29   9.8  

>sp|Q9PLI5|Y114_CHLMU Uncharacterized protein TC_0114 OS=Chlamydia
           muridarum GN=TC_0114 PE=4 SV=2
          Length = 122

 Score = 95.5 bits (236), Expect = 1e-19
 Identities = 49/88 (55%), Positives = 53/88 (60%)
 Frame = -2

Query: 482 GKGPLNALAPAPDMDRTVSRRSEPSSRTALMGEQPNPWDVLPPQVAKSRHRGAKPSRRCX 303
           G  PL   AP  D D+TVSRR EPSSRTAL+GEQPNPWD+L PQ A SRHRGAKP RR  
Sbjct: 35  GTAPLKYPAPTKDRDQTVSRRFEPSSRTALIGEQPNPWDLLQPQDAMSRHRGAKPPRRYE 94

Query: 302 XXXXXXXXXXXXXXXXERRPFHLEPSDH 219
                           +RR FH  P DH
Sbjct: 95  LLVAISLLSPEYLLSVKRRRFHFPPPDH 122


>sp|P70906|VLP18_BORHE Variable large protein 18 OS=Borrelia hermsii
           GN=vlp18 PE=3 SV=1
          Length = 360

 Score = 33.9 bits (76), Expect = 0.40
 Identities = 16/40 (40%), Positives = 24/40 (60%)
 Frame = +2

Query: 134 DGNQSTSAKAEGSLTARPTSRAGTKVGLSDPTVPSGRAVA 253
           +G+Q+  A A+G+ TA   ++ GTK  LS+   P   AVA
Sbjct: 250 EGDQALGAAADGTTTAMSFAKGGTKDNLSNANTPKAAAVA 289


>sp|Q23356|MIG15_CAEEL Serine/threonine-protein kinase mig-15
           OS=Caenorhabditis elegans GN=mig-15 PE=1 SV=3
          Length = 1096

 Score = 31.2 bits (69), Expect = 2.6
 Identities = 20/68 (29%), Positives = 35/68 (51%), Gaps = 2/68 (2%)
 Frame = +2

Query: 26  TLCQELRTKRQSQVDSFYGAYASQRVTEACKGFLRLDGNQSTSAKAEGS--LTARPTSRA 199
           TL  ++R  R    +S +GAY  +++ E   G + LD + S S   EG+  L  +P + +
Sbjct: 596 TLVSDVR--RNGNGNSGHGAYKGKKIPEIRPGIISLDDDDSDSDNEEGNEPLMFKPINAS 653

Query: 200 GTKVGLSD 223
            ++  L D
Sbjct: 654 SSRGALPD 661


>sp|Q5SZD1|CF141_HUMAN Uncharacterized protein C6orf141 OS=Homo
           sapiens GN=C6orf141 PE=2 SV=2
          Length = 244

 Score = 30.0 bits (66), Expect = 5.7
 Identities = 23/57 (40%), Positives = 25/57 (43%)
 Frame = +1

Query: 259 DKSYSKDNRLIFPKSSHRREGLAPRCRLFATCGGSTSQGLGCSPIKAVRELGSERRE 429
           D S S  +   FP+   R   LAP  R  AT G S SQG G     A R LG    E
Sbjct: 21  DSSRSLGDLGPFPREVGRGAPLAPGARNPATAGASRSQGGGHEDRTADRALGPRAGE 77


>sp|Q250N9|RPOC_DESHY DNA-directed RNA polymerase subunit beta'
           OS=Desulfitobacterium hafniense (strain Y51) GN=rpoC
           PE=3 SV=1
          Length = 1161

 Score = 29.3 bits (64), Expect = 9.8
 Identities = 20/59 (33%), Positives = 31/59 (52%), Gaps = 2/59 (3%)
 Frame = +2

Query: 65  VDSFYGAYASQRVTEACKGFLRLDGNQSTSAKAEG--SLTARPTSRAGTKVGLSDPTVP 235
           ++   G  A   +   C    RL G ++T+   +G  SL  + ++RAG  VGL+D TVP
Sbjct: 573 INEVAGKKALNNIVAKC---YRLGGYKATAQLLDGIKSLGFKYSTRAGMTVGLADITVP 628


>sp|O13862|RDP1_SCHPO Transcriptional activator protein rdp1
           OS=Schizosaccharomyces pombe GN=rdp1 PE=2 SV=1
          Length = 478

 Score = 29.3 bits (64), Expect = 9.8
 Identities = 13/36 (36%), Positives = 21/36 (58%)
 Frame = +2

Query: 131 LDGNQSTSAKAEGSLTARPTSRAGTKVGLSDPTVPS 238
           L GN+S SA A  + ++ PT+  G  +  + PT+ S
Sbjct: 57  LGGNESMSAVATSAASSLPTAENGVSLNAASPTIHS 92


>sp|P30924|GLGB_SOLTU 1,4-alpha-glucan-branching enzyme OS=Solanum
           tuberosum GN=SBE1 PE=2 SV=2
          Length = 861

 Score = 29.3 bits (64), Expect = 9.8
 Identities = 14/35 (40%), Positives = 21/35 (60%)
 Frame = +2

Query: 14  TRILTLCQELRTKRQSQVDSFYGAYASQRVTEACK 118
           T ++  CQ+L+  RQ+ V S+Y    S+RVT   K
Sbjct: 776 TELMNACQKLKITRQTFVVSYYQQPISRRVTRNLK 810
tr_hit_id Q4EE25
Definition tr|Q4EE25|Q4EE25_LISMO Putative uncharacterized protein OS=Listeria monocytogenes str. 4b H7858
Align length 111
Score (bit) 179.0
E-value 8.0e-44
Report 
BLASTX 2.2.19 [Nov-02-2008]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= BP918532|Adiantum capillus-veneris mRNA, clone:
YMU001_000114_F05.
         (483 letters)

Database: uniprot_trembl.fasta 
           7,341,751 sequences; 2,391,615,440 total letters

Searching..................................................done



                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

tr|Q4EE25|Q4EE25_LISMO Putative uncharacterized protein OS=Liste...   179   8e-44
tr|A5ZQM3|A5ZQM3_9FIRM Putative uncharacterized protein OS=Rumin...   172   6e-42
tr|Q848W1|Q848W1_BACME Putative uncharacterized protein OS=Bacil...   158   1e-37
tr|A5ZYK8|A5ZYK8_9FIRM Putative uncharacterized protein OS=Rumin...   154   2e-36
tr|A0Q208|A0Q208_CLONN Putative uncharacterized protein OS=Clost...   149   9e-35
tr|A0PXN7|A0PXN7_CLONN Putative uncharacterized protein OS=Clost...   149   9e-35
tr|B1BEF3|B1BEF3_CLOBO Putative uncharacterized protein (Fragmen...   149   9e-35
tr|B1BEE0|B1BEE0_CLOBO Putative uncharacterized protein OS=Clost...   149   9e-35
tr|B1BE06|B1BE06_CLOBO Putative uncharacterized protein OS=Clost...   149   9e-35
tr|B1QFN6|B1QFN6_CLOBO Putative uncharacterized protein OS=Clost...   145   1e-33
tr|B1QFL7|B1QFL7_CLOBO Putative uncharacterized protein (Fragmen...   145   1e-33
tr|B1RTR7|B1RTR7_CLOPE Putative uncharacterized protein OS=Clost...   144   2e-33
tr|B1RKU9|B1RKU9_CLOPE Putative uncharacterized protein OS=Clost...   144   2e-33
tr|B1RCB4|B1RCB4_CLOPE Putative uncharacterized protein OS=Clost...   144   2e-33
tr|B1BTI8|B1BTI8_CLOPE Putative uncharacterized protein OS=Clost...   144   2e-33
tr|B1BLN6|B1BLN6_CLOPE Putative uncharacterized protein OS=Clost...   144   2e-33
tr|B1BEX7|B1BEX7_CLOPE Putative uncharacterized protein OS=Clost...   144   2e-33
tr|B6G1S6|B6G1S6_9CLOT Putative uncharacterized protein OS=Clost...   142   1e-32
tr|Q877Q8|Q877Q8_CLOTE Putative uncharacterized protein OS=Clost...   141   1e-32
tr|A7DZU9|A7DZU9_CLOSP Hypothetical CTC00065-like protein OS=Clo...   141   1e-32
tr|B1C1N3|B1C1N3_9FIRM Putative uncharacterized protein OS=Clost...   140   4e-32
tr|A8R9P5|A8R9P5_9FIRM Putative uncharacterized protein OS=Eubac...   135   1e-30
tr|B5HM15|B5HM15_9ACTO Putative uncharacterized protein OS=Strep...   133   5e-30
tr|B5G7E4|B5G7E4_9ACTO Putative uncharacterized protein OS=Strep...   133   5e-30
tr|B4V362|B4V362_9ACTO Putative uncharacterized protein OS=Strep...   131   2e-29
tr|B2E6W4|B2E6W4_STRPN Putative uncharacterized protein OS=Strep...   130   2e-29
tr|Q8CQV6|Q8CQV6_STAES Putative uncharacterized protein OS=Staph...   127   2e-28
tr|B0A9C5|B0A9C5_9CLOT Putative uncharacterized protein OS=Clost...   127   3e-28
tr|B0A7G5|B0A7G5_9CLOT Putative uncharacterized protein OS=Clost...   127   3e-28
tr|A5Z309|A5Z309_9FIRM Putative uncharacterized protein OS=Eubac...   122   9e-27

>tr|Q4EE25|Q4EE25_LISMO Putative uncharacterized protein OS=Listeria
           monocytogenes str. 4b H7858 GN=LMOh7858_1903 PE=4 SV=1
          Length = 112

 Score =  179 bits (453), Expect = 8e-44
 Identities = 89/111 (80%), Positives = 94/111 (84%)
 Frame = +2

Query: 131 LDGNQSTSAKAEGSLTARPTSRAGTKVGLSDPTVPSGRAVAQRIKVTLRITG*SSPRVHI 310
           +DGN S S KA+GSLTAR TSRAGTKVGLSDP VP GRA+AQRIK T  ITG S PRVHI
Sbjct: 1   MDGNHSQSVKAQGSLTARLTSRAGTKVGLSDPVVPHGRAIAQRIKATPGITGLSPPRVHI 60

Query: 311 DGKVWHLDVGSSPPVAVVRPKGWAVRPLKRYVSWVQNVVRQFGPYPVRALE 463
           DG+VWHLDVGSS P AVV PKGWAVRPLKR+ SWVQNVVRQFGPYP RA E
Sbjct: 61  DGEVWHLDVGSSHPGAVVGPKGWAVRPLKRHASWVQNVVRQFGPYPSRAQE 111


>tr|A5ZQM3|A5ZQM3_9FIRM Putative uncharacterized protein
           OS=Ruminococcus obeum ATCC 29174 GN=RUMOBE_01295 PE=4
           SV=1
          Length = 109

 Score =  172 bits (437), Expect = 6e-42
 Identities = 87/109 (79%), Positives = 89/109 (81%)
 Frame = +2

Query: 131 LDGNQSTSAKAEGSLTARPTSRAGTKVGLSDPTVPSGRAVAQRIKVTLRITG*SSPRVHI 310
           +DGN   SAKAEGSLTA PT  AGTKVGLSDP V SG A+AQRIK TL ITG S PRVHI
Sbjct: 1   MDGNHPKSAKAEGSLTATPTGGAGTKVGLSDPVVLSGNAIAQRIKATLGITGLSLPRVHI 60

Query: 311 DGKVWHLDVGSSPPVAVVRPKGWAVRPLKRYVSWVQNVVRQFGPYPVRA 457
           DG VWHLDVGSS P AVV PKGWAVRPLKRY SWVQNVVRQFGPYP  A
Sbjct: 61  DGVVWHLDVGSSHPGAVVGPKGWAVRPLKRYASWVQNVVRQFGPYPAWA 109


>tr|Q848W1|Q848W1_BACME Putative uncharacterized protein OS=Bacillus
           megaterium PE=4 SV=1
          Length = 95

 Score =  158 bits (400), Expect = 1e-37
 Identities = 77/92 (83%), Positives = 80/92 (86%)
 Frame = +2

Query: 173 LTARPTSRAGTKVGLSDPTVPSGRAVAQRIKVTLRITG*SSPRVHIDGKVWHLDVGSSPP 352
           +TAR TSRAGTKVGLSDP VP GRA+AQRIK T  ITG S PRVHIDG+VWHLDVGSS P
Sbjct: 1   MTARTTSRAGTKVGLSDPVVPHGRAIAQRIKATPGITGLSPPRVHIDGEVWHLDVGSSHP 60

Query: 353 VAVVRPKGWAVRPLKRYVSWVQNVVRQFGPYP 448
            AVV PKGWAVRPLKRY SWVQNVVRQFGPYP
Sbjct: 61  GAVVGPKGWAVRPLKRYASWVQNVVRQFGPYP 92


>tr|A5ZYK8|A5ZYK8_9FIRM Putative uncharacterized protein
           OS=Ruminococcus obeum ATCC 29174 GN=RUMOBE_04125 PE=4
           SV=1
          Length = 108

 Score =  154 bits (389), Expect = 2e-36
 Identities = 78/100 (78%), Positives = 81/100 (81%)
 Frame = +2

Query: 158 KAEGSLTARPTSRAGTKVGLSDPTVPSGRAVAQRIKVTLRITG*SSPRVHIDGKVWHLDV 337
           ++ GSLTA PT  AGTKVGLSDP V SG A+AQRIK TL ITG S PRVHIDG VWHLDV
Sbjct: 9   QSRGSLTATPTGGAGTKVGLSDPVVLSGNAIAQRIKATLGITGLSLPRVHIDGVVWHLDV 68

Query: 338 GSSPPVAVVRPKGWAVRPLKRYVSWVQNVVRQFGPYPVRA 457
           GSS P AVV  KGWAVRPLKRY SWVQNVVRQFGPYP  A
Sbjct: 69  GSSHPGAVVGLKGWAVRPLKRYASWVQNVVRQFGPYPAWA 108


>tr|A0Q208|A0Q208_CLONN Putative uncharacterized protein
           OS=Clostridium novyi (strain NT) GN=NT01CX_0152 PE=4
           SV=1
          Length = 213

 Score =  149 bits (375), Expect = 9e-35
 Identities = 72/98 (73%), Positives = 78/98 (79%)
 Frame = -3

Query: 346 RRADIEVPNLPVDVNSWGRSACYP*SNFYPLSDGPSTWNRRITKADFRPCSTGRSRSQAP 167
           RRADIEVPNLPVDV+SWGRSACYP  +FYPLSDGPS  N RITK DFRPCST   RSQAP
Sbjct: 2   RRADIEVPNLPVDVDSWGRSACYPRGSFYPLSDGPSIQNHRITKPDFRPCSTCMCRSQAP 61

Query: 166 FCLCTRRLISVQPEETFARLRYSLGGIRPIETVYLGLS 53
           FCLCT R IS + E TF RLRY LGG RP +T +L +S
Sbjct: 62  FCLCTLRAISDRAEGTFGRLRYLLGGDRPSQTAHLAMS 99


>tr|A0PXN7|A0PXN7_CLONN Putative uncharacterized protein
           OS=Clostridium novyi (strain NT) GN=NT01CX_0251 PE=4
           SV=1
          Length = 213

 Score =  149 bits (375), Expect = 9e-35
 Identities = 72/98 (73%), Positives = 78/98 (79%)
 Frame = -3

Query: 346 RRADIEVPNLPVDVNSWGRSACYP*SNFYPLSDGPSTWNRRITKADFRPCSTGRSRSQAP 167
           RRADIEVPNLPVDV+SWGRSACYP  +FYPLSDGPS  N RITK DFRPCST   RSQAP
Sbjct: 2   RRADIEVPNLPVDVDSWGRSACYPRGSFYPLSDGPSIQNHRITKPDFRPCSTCMCRSQAP 61

Query: 166 FCLCTRRLISVQPEETFARLRYSLGGIRPIETVYLGLS 53
           FCLCT R IS + E TF RLRY LGG RP +T +L +S
Sbjct: 62  FCLCTLRAISDRAEGTFGRLRYLLGGDRPSQTAHLAMS 99


>tr|B1BEF3|B1BEF3_CLOBO Putative uncharacterized protein (Fragment)
           OS=Clostridium botulinum C str. Eklund GN=CBC_A1887 PE=4
           SV=1
          Length = 107

 Score =  149 bits (375), Expect = 9e-35
 Identities = 72/98 (73%), Positives = 78/98 (79%)
 Frame = -3

Query: 346 RRADIEVPNLPVDVNSWGRSACYP*SNFYPLSDGPSTWNRRITKADFRPCSTGRSRSQAP 167
           RRADIEVPNLPVDV+SWGRSACYP  +FYPLSDGPS  N RITK DFRPCST   RSQAP
Sbjct: 2   RRADIEVPNLPVDVDSWGRSACYPRGSFYPLSDGPSIQNHRITKPDFRPCSTCMCRSQAP 61

Query: 166 FCLCTRRLISVQPEETFARLRYSLGGIRPIETVYLGLS 53
           FCLCT R IS + E TF RLRY LGG RP +T +L +S
Sbjct: 62  FCLCTLRAISDRAEGTFGRLRYLLGGDRPSQTAHLAMS 99


>tr|B1BEE0|B1BEE0_CLOBO Putative uncharacterized protein
           OS=Clostridium botulinum C str. Eklund GN=CBC_A1890 PE=4
           SV=1
          Length = 210

 Score =  149 bits (375), Expect = 9e-35
 Identities = 72/98 (73%), Positives = 78/98 (79%)
 Frame = -3

Query: 346 RRADIEVPNLPVDVNSWGRSACYP*SNFYPLSDGPSTWNRRITKADFRPCSTGRSRSQAP 167
           RRADIEVPNLPVDV+SWGRSACYP  +FYPLSDGPS  N RITK DFRPCST   RSQAP
Sbjct: 2   RRADIEVPNLPVDVDSWGRSACYPRGSFYPLSDGPSIQNHRITKPDFRPCSTCMCRSQAP 61

Query: 166 FCLCTRRLISVQPEETFARLRYSLGGIRPIETVYLGLS 53
           FCLCT R IS + E TF RLRY LGG RP +T +L +S
Sbjct: 62  FCLCTLRAISDRAEGTFGRLRYLLGGDRPSQTAHLAMS 99


>tr|B1BE06|B1BE06_CLOBO Putative uncharacterized protein
           OS=Clostridium botulinum C str. Eklund GN=CBC_0392 PE=4
           SV=1
          Length = 213

 Score =  149 bits (375), Expect = 9e-35
 Identities = 72/98 (73%), Positives = 78/98 (79%)
 Frame = -3

Query: 346 RRADIEVPNLPVDVNSWGRSACYP*SNFYPLSDGPSTWNRRITKADFRPCSTGRSRSQAP 167
           RRADIEVPNLPVDV+SWGRSACYP  +FYPLSDGPS  N RITK DFRPCST   RSQAP
Sbjct: 2   RRADIEVPNLPVDVDSWGRSACYPRGSFYPLSDGPSIQNHRITKPDFRPCSTCMCRSQAP 61

Query: 166 FCLCTRRLISVQPEETFARLRYSLGGIRPIETVYLGLS 53
           FCLCT R IS + E TF RLRY LGG RP +T +L +S
Sbjct: 62  FCLCTLRAISDRAEGTFGRLRYLLGGDRPSQTAHLAMS 99


>tr|B1QFN6|B1QFN6_CLOBO Putative uncharacterized protein
           OS=Clostridium botulinum NCTC 2916 GN=CBN_0042 PE=4 SV=1
          Length = 218

 Score =  145 bits (365), Expect = 1e-33
 Identities = 71/98 (72%), Positives = 77/98 (78%)
 Frame = -3

Query: 346 RRADIEVPNLPVDVNSWGRSACYP*SNFYPLSDGPSTWNRRITKADFRPCSTGRSRSQAP 167
           RRADIEVPNLPVDV+SWGRSACYP  +FYPLSDGP T   RITK DFRPCST   RSQAP
Sbjct: 2   RRADIEVPNLPVDVDSWGRSACYPRGSFYPLSDGPPTRYHRITKPDFRPCSTCMCRSQAP 61

Query: 166 FCLCTRRLISVQPEETFARLRYSLGGIRPIETVYLGLS 53
           FCLCT R IS + E TF RLRY LGG RP +T +L +S
Sbjct: 62  FCLCTLRAISDRAEGTFGRLRYFLGGDRPSQTAHLTMS 99