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NBDC - LSDB Archive
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BP918540
Clone id YMU001_000114_G02
Library
Length 360
Definition Adiantum capillus-veneris mRNA. clone: YMU001_000114_G02.
Accession
Tissue type prothallium
Developmental stage -
Contig ID
Sequence 
GGCACTCAAACCACTTTAATAAACCATCCACAGCAAAATGAGGAAGTATCTAGTCACAAA
TTTCATTCTGCCAAAAGCTACTAGCACATGCAATGCAGAAGACTAGCAGAAGAGAATTGA
ACGAATTTAGTTCAATATATGGGCGCAAGAGTACAGTGGGGGGCTCATCTACAAAACACA
GAAGAGGGGGATTTGTGTATGAAGTGGGTCATGTAATTCACTTGACAATGATGGTACCAA
CCATGTTAGCAGACTTGTGATGGGTGCAGTAGTAGGTGTAGGTGCCAGGGGTGGAGACCT
TGGCGGTGAAGGTTGGCTCATCCTCTGTCAAAAGGTCATTCTCATCCATGGAAGCAGCCT
■■Homology search results ■■ -
sp_hit_id Q7SIB8
Definition sp|Q7SIB8|PLAS_DRYCA Plastocyanin OS=Dryopteris crassirhizoma
Align length 46
Score (bit) 82.8
E-value 5.0e-16
Report 
BLASTX 2.2.19 [Nov-02-2008]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= BP918540|Adiantum capillus-veneris mRNA, clone:
YMU001_000114_G02.
         (360 letters)

Database: uniprot_sprot.fasta 
           412,525 sequences; 148,809,765 total letters

Searching..................................................done



                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

sp|Q7SIB8|PLAS_DRYCA Plastocyanin OS=Dryopteris crassirhizoma GN...    83   5e-16
sp|Q5N4W8|PLAS_SYNP6 Plastocyanin OS=Synechococcus sp. (strain A...    47   3e-05
sp|P55020|PLAS_SYNE7 Plastocyanin OS=Synechococcus elongatus (st...    47   3e-05
sp|P42699|PLAS2_ARATH Plastocyanin major isoform, chloroplastic ...    47   3e-05
sp|P00294|PLAS_CAPBU Plastocyanin OS=Capsella bursa-pastoris GN=...    47   4e-05
sp|P11970|PLAS2_POPNI Plastocyanin B, chloroplastic OS=Populus n...    46   5e-05
sp|P17340|PLAS_SOLLC Plastocyanin, chloroplastic OS=Solanum lyco...    45   9e-05
sp|P35477|PLAS2_TOBAC Plastocyanin B'/B'' OS=Nicotiana tabacum P...    45   9e-05
sp|P00288|PLAS_VICFA Plastocyanin OS=Vicia faba GN=PETE PE=1 SV=1      45   1e-04
sp|P21697|PLAS_SYNY3 Plastocyanin OS=Synechocystis sp. (strain P...    45   1e-04
sp|P00296|PLAS_SOLTU Plastocyanin OS=Solanum tuberosum GN=PETE P...    45   1e-04
sp|P00298|PLAS_RUMOB Plastocyanin OS=Rumex obtusifolius GN=PETE ...    45   1e-04
sp|P16002|PLAS_PEA Plastocyanin, chloroplastic OS=Pisum sativum ...    45   1e-04
sp|P00297|PLAS_SOLCR Plastocyanin OS=Solanum crispum GN=PETE PE=...    44   2e-04
sp|P00291|PLAS_SAMNI Plastocyanin OS=Sambucus nigra GN=PETE PE=1...    43   4e-04
sp|P00287|PLAS_PHAVU Plastocyanin OS=Phaseolus vulgaris GN=PETE ...    43   4e-04
sp|P00295|PLAS_MERPE Plastocyanin OS=Mercurialis perennis GN=PET...    43   4e-04
sp|P00299|PLAS1_POPNI Plastocyanin A, chloroplastic OS=Populus n...    43   4e-04
sp|P50057|PLAS_PROHO Plastocyanin OS=Prochlorothrix hollandica G...    43   6e-04
sp|P00290|PLAS_LACSA Plastocyanin OS=Lactuca sativa GN=PETE PE=1...    43   6e-04
sp|P11490|PLAS1_ARATH Plastocyanin minor isoform, chloroplastic ...    43   6e-04
sp|O22646|PLAS_FRIAG Plastocyanin, chloroplastic OS=Fritillaria ...    42   7e-04
sp|P00289|PLAS_SPIOL Plastocyanin, chloroplastic OS=Spinacia ole...    42   0.001
sp|P35476|PLAS1_TOBAC Plastocyanin A'/A'' OS=Nicotiana tabacum P...    42   0.001
sp|P26956|PLAS_SCEOB Plastocyanin, chloroplastic OS=Scenedesmus ...    42   0.001
sp|P18068|PLAS_CHLRE Plastocyanin, chloroplastic OS=Chlamydomona...    41   0.002
sp|P00300|PLAS_CHLFU Plastocyanin OS=Chlorella fusca GN=petE PE=...    41   0.002
sp|P08248|PLAS_HORVU Plastocyanin, chloroplastic OS=Hordeum vulg...    40   0.004
sp|P00293|PLAS_CUCSA Plastocyanin OS=Cucumis sativus GN=PETE PE=...    40   0.004
sp|P00292|PLAS_CUCPE Plastocyanin OS=Cucurbita pepo GN=PETE PE=1...    40   0.004

>sp|Q7SIB8|PLAS_DRYCA Plastocyanin OS=Dryopteris crassirhizoma
           GN=PETE PE=1 SV=1
          Length = 102

 Score = 82.8 bits (203), Expect = 5e-16
 Identities = 38/46 (82%), Positives = 42/46 (91%)
 Frame = -3

Query: 358 AASMDENDLLTEDEPTFTAKVSTPGTYTYYCTHHKSANMVGTIIVK 221
           AASMDENDLL+EDEP+F AKVSTPGTYT+YCT HKSANM GT+ VK
Sbjct: 57  AASMDENDLLSEDEPSFKAKVSTPGTYTFYCTPHKSANMKGTLTVK 102


>sp|Q5N4W8|PLAS_SYNP6 Plastocyanin OS=Synechococcus sp. (strain ATCC
           27144 / PCC 6301 / SAUG 1402/1) GN=petE PE=3 SV=1
          Length = 125

 Score = 47.0 bits (110), Expect = 3e-05
 Identities = 21/43 (48%), Positives = 25/43 (58%)
 Frame = -3

Query: 349 MDENDLLTEDEPTFTAKVSTPGTYTYYCTHHKSANMVGTIIVK 221
           +   DL      TF A  S PGTYTYYC  H+ A MVG I+V+
Sbjct: 83  LSHKDLAFSPGETFEATFSEPGTYTYYCEPHRGAGMVGKIVVQ 125


>sp|P55020|PLAS_SYNE7 Plastocyanin OS=Synechococcus elongatus
           (strain PCC 7942) GN=petE PE=1 SV=1
          Length = 125

 Score = 47.0 bits (110), Expect = 3e-05
 Identities = 21/43 (48%), Positives = 25/43 (58%)
 Frame = -3

Query: 349 MDENDLLTEDEPTFTAKVSTPGTYTYYCTHHKSANMVGTIIVK 221
           +   DL      TF A  S PGTYTYYC  H+ A MVG I+V+
Sbjct: 83  LSHKDLAFSPGETFEATFSEPGTYTYYCEPHRGAGMVGKIVVQ 125


>sp|P42699|PLAS2_ARATH Plastocyanin major isoform, chloroplastic
           OS=Arabidopsis thaliana GN=DRT112 PE=1 SV=2
          Length = 167

 Score = 47.0 bits (110), Expect = 3e-05
 Identities = 20/43 (46%), Positives = 27/43 (62%)
 Frame = -3

Query: 352 SMDENDLLTEDEPTFTAKVSTPGTYTYYCTHHKSANMVGTIIV 224
           SMDE DLL     T+   ++ PGTY++YC  H+ A MVG + V
Sbjct: 124 SMDEQDLLNGAGETYEVALTEPGTYSFYCAPHQGAGMVGKVTV 166


>sp|P00294|PLAS_CAPBU Plastocyanin OS=Capsella bursa-pastoris
           GN=PETE PE=1 SV=1
          Length = 99

 Score = 46.6 bits (109), Expect = 4e-05
 Identities = 20/43 (46%), Positives = 27/43 (62%)
 Frame = -3

Query: 352 SMDENDLLTEDEPTFTAKVSTPGTYTYYCTHHKSANMVGTIIV 224
           SMDENDLL     T+   ++  GTY++YC  H+ A MVG + V
Sbjct: 56  SMDENDLLNAAGETYEVALTEAGTYSFYCAPHQGAGMVGKVTV 98


>sp|P11970|PLAS2_POPNI Plastocyanin B, chloroplastic OS=Populus
           nigra GN=PETE PE=1 SV=2
          Length = 168

 Score = 46.2 bits (108), Expect = 5e-05
 Identities = 21/43 (48%), Positives = 26/43 (60%)
 Frame = -3

Query: 352 SMDENDLLTEDEPTFTAKVSTPGTYTYYCTHHKSANMVGTIIV 224
           SM E DLL     TF   +S  G YT+YC+ H+ A MVG +IV
Sbjct: 125 SMSEEDLLNAKGETFEVALSDKGEYTFYCSPHQGAGMVGKVIV 167


>sp|P17340|PLAS_SOLLC Plastocyanin, chloroplastic OS=Solanum
           lycopersicum GN=PETE PE=2 SV=1
          Length = 170

 Score = 45.4 bits (106), Expect = 9e-05
 Identities = 20/43 (46%), Positives = 26/43 (60%)
 Frame = -3

Query: 352 SMDENDLLTEDEPTFTAKVSTPGTYTYYCTHHKSANMVGTIIV 224
           SM E DLL     T++  +S  GTYT+YC  H+ A MVG + V
Sbjct: 127 SMSEEDLLNAAGETYSVTLSEKGTYTFYCAPHQGAGMVGKVTV 169


>sp|P35477|PLAS2_TOBAC Plastocyanin B'/B'' OS=Nicotiana tabacum PE=1
           SV=1
          Length = 99

 Score = 45.4 bits (106), Expect = 9e-05
 Identities = 20/43 (46%), Positives = 26/43 (60%)
 Frame = -3

Query: 352 SMDENDLLTEDEPTFTAKVSTPGTYTYYCTHHKSANMVGTIIV 224
           SM E DLL     T++  +S  GTYT+YC  H+ A MVG + V
Sbjct: 56  SMSEEDLLNGPGETYSVTLSEKGTYTFYCAPHQGAGMVGKVTV 98


>sp|P00288|PLAS_VICFA Plastocyanin OS=Vicia faba GN=PETE PE=1 SV=1
          Length = 99

 Score = 44.7 bits (104), Expect = 1e-04
 Identities = 19/43 (44%), Positives = 26/43 (60%)
 Frame = -3

Query: 352 SMDENDLLTEDEPTFTAKVSTPGTYTYYCTHHKSANMVGTIIV 224
           SM E DLL     T++ K+   GTY +YC+ H+ A MVG + V
Sbjct: 56  SMPEEDLLNAPGETYSVKLDAKGTYKFYCSPHQGAGMVGQVTV 98


>sp|P21697|PLAS_SYNY3 Plastocyanin OS=Synechocystis sp. (strain PCC
           6803) GN=petE PE=1 SV=1
          Length = 126

 Score = 44.7 bits (104), Expect = 1e-04
 Identities = 19/46 (41%), Positives = 27/46 (58%)
 Frame = -3

Query: 358 AASMDENDLLTEDEPTFTAKVSTPGTYTYYCTHHKSANMVGTIIVK 221
           AA +    L      +FT+  + PGTYTYYC  H+ A MVG ++V+
Sbjct: 81  AAKLSHKGLAFAAGESFTSTFTEPGTYTYYCEPHRGAGMVGKVVVE 126
tr_hit_id A9PJU8
Definition tr|A9PJU8|A9PJU8_POPJC Putative uncharacterized protein OS=Populus jackii
Align length 43
Score (bit) 46.2
E-value 0.0008
Report 
BLASTX 2.2.19 [Nov-02-2008]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= BP918540|Adiantum capillus-veneris mRNA, clone:
YMU001_000114_G02.
         (360 letters)

Database: uniprot_trembl.fasta 
           7,341,751 sequences; 2,391,615,440 total letters

Searching..................................................done



                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

tr|A9PJU8|A9PJU8_POPJC Putative uncharacterized protein OS=Popul...    46   8e-04
tr|A9PG34|A9PG34_POPTR Putative uncharacterized protein OS=Popul...    46   8e-04
tr|Q1EMM9|Q1EMM9_PLAMJ Plastocyanine (Fragment) OS=Plantago majo...    45   0.001
tr|A8YB36|A8YB36_MICAE Genome sequencing data, contig C266 OS=Mi...    45   0.002
tr|B7KAE8|B7KAE8_9CHRO Plastocyanin OS=Cyanothece sp. PCC 7424 G...    44   0.003
tr|B7K170|B7K170_SYNP8 Plastocyanin OS=Synechococcus sp. (strain...    44   0.003
tr|B4C3N8|B4C3N8_9CHRO Plastocyanin OS=Cyanothece sp. PCC 8802 G...    44   0.003
tr|B0JHN7|B0JHN7_MICAN Plastocyanin OS=Microcystis aeruginosa (s...    44   0.004
tr|B4B8S2|B4B8S2_9CHRO Plastocyanin OS=Cyanothece sp. PCC 7822 G...    44   0.004
tr|A7D2K9|A7D2K9_9EURY Shikimate kinase OS=Halorubrum lacusprofu...    44   0.004
tr|Q4C0W9|Q4C0W9_CROWT Blue (Type 1) copper domain OS=Crocosphae...    43   0.009
tr|A3IMH3|A3IMH3_9CHRO Plastocyanin OS=Cyanothece sp. CCY 0110 G...    43   0.009
tr|Q1WLY5|Q1WLY5_CHLIN Chloroplast plastocyanin OS=Chlamydomonas...    42   0.012
tr|A9PK67|A9PK67_POPJC Putative uncharacterized protein OS=Popul...    42   0.012
tr|Q6RUN5|Q6RUN5_TOBAC ERT10 (Fragment) OS=Nicotiana tabacum GN=...    42   0.015
tr|A9NL56|A9NL56_PICSI Putative uncharacterized protein OS=Picea...    42   0.015
tr|B7FH62|B7FH62_MEDTR Putative uncharacterized protein OS=Medic...    42   0.020
tr|A7NVP7|A7NVP7_VITVI Chromosome chr18 scaffold_1, whole genome...    42   0.020
tr|A5ALX7|A5ALX7_VITVI Putative uncharacterized protein OS=Vitis...    42   0.020
tr|Q2JU60|Q2JU60_SYNJA Plastocyanin OS=Synechococcus sp. (strain...    41   0.026
tr|A8JH68|A8JH68_CHLRE Plastocyanin, chloroplast OS=Chlamydomona...    41   0.034
tr|A4S360|A4S360_OSTLU Plastocyanin, chloroplast OS=Ostreococcus...    41   0.034
tr|Q4R1A7|Q4R1A7_PEDDU Plastocyanin OS=Pediastrum duplex GN=Pcy ...    40   0.045
tr|Q5V725|Q5V725_HALMA Halocyanin-like OS=Haloarcula marismortui...    40   0.045
tr|Q9ST31|Q9ST31_PEDBO Pre-apoplastocyanin (Plastocyanin) OS=Ped...    40   0.059
tr|A1KYG6|A1KYG6_CYAA5 Plastocyanin OS=Cyanothece (strain ATCC 5...    40   0.077
tr|B4WSM5|B4WSM5_9SYNE Plastocyanin OS=Synechococcus sp. PCC 733...    40   0.077
tr|B4FCL1|B4FCL1_MAIZE Putative uncharacterized protein OS=Zea m...    40   0.077
tr|Q7NI43|Q7NI43_GLOVI Plastocyanin OS=Gloeobacter violaceus GN=...    39   0.10 
tr|Q2JHE1|Q2JHE1_SYNJB Plastocyanin OS=Synechococcus sp. (strain...    39   0.10 

>tr|A9PJU8|A9PJU8_POPJC Putative uncharacterized protein OS=Populus
           jackii PE=2 SV=1
          Length = 168

 Score = 46.2 bits (108), Expect = 8e-04
 Identities = 21/43 (48%), Positives = 26/43 (60%)
 Frame = -3

Query: 352 SMDENDLLTEDEPTFTAKVSTPGTYTYYCTHHKSANMVGTIIV 224
           SM E DLL     TF   +S  G YT+YC+ H+ A MVG +IV
Sbjct: 125 SMSEEDLLNAKGETFEVALSDKGEYTFYCSPHQGAGMVGKVIV 167


>tr|A9PG34|A9PG34_POPTR Putative uncharacterized protein OS=Populus
           trichocarpa PE=2 SV=1
          Length = 168

 Score = 46.2 bits (108), Expect = 8e-04
 Identities = 21/43 (48%), Positives = 26/43 (60%)
 Frame = -3

Query: 352 SMDENDLLTEDEPTFTAKVSTPGTYTYYCTHHKSANMVGTIIV 224
           SM E DLL     TF   +S  G YT+YC+ H+ A MVG +IV
Sbjct: 125 SMSEEDLLNAKGETFEVALSDKGEYTFYCSPHQGAGMVGKVIV 167


>tr|Q1EMM9|Q1EMM9_PLAMJ Plastocyanine (Fragment) OS=Plantago major
           GN=pc1 PE=2 SV=1
          Length = 191

 Score = 45.4 bits (106), Expect = 0.001
 Identities = 19/46 (41%), Positives = 27/46 (58%)
 Frame = -3

Query: 358 AASMDENDLLTEDEPTFTAKVSTPGTYTYYCTHHKSANMVGTIIVK 221
           A SM E D L   +  ++  ++  GTYT+YC  H+ A MVG + VK
Sbjct: 146 AISMSEEDYLNAKDEVYSVTLTEKGTYTFYCAPHQGAGMVGKVTVK 191


>tr|A8YB36|A8YB36_MICAE Genome sequencing data, contig C266
           OS=Microcystis aeruginosa PCC 7806 GN=IPF_5038 PE=4 SV=1
          Length = 125

 Score = 45.1 bits (105), Expect = 0.002
 Identities = 21/46 (45%), Positives = 26/46 (56%)
 Frame = -3

Query: 358 AASMDENDLLTEDEPTFTAKVSTPGTYTYYCTHHKSANMVGTIIVK 221
           AA +    L      +F +  S PGTYTYYC  H+ A MVGTI V+
Sbjct: 80  AAKLSHKGLAFSAGESFESTFSEPGTYTYYCEPHRGAGMVGTITVQ 125


>tr|B7KAE8|B7KAE8_9CHRO Plastocyanin OS=Cyanothece sp. PCC 7424
           GN=PCC7424_4559 PE=3 SV=1
          Length = 127

 Score = 44.3 bits (103), Expect = 0.003
 Identities = 20/46 (43%), Positives = 25/46 (54%)
 Frame = -3

Query: 358 AASMDENDLLTEDEPTFTAKVSTPGTYTYYCTHHKSANMVGTIIVK 221
           A  +    L+     +FT     PGTYTYYC  H+ A MVGTI V+
Sbjct: 82  ATKISHKALVFSPGESFTTTFDEPGTYTYYCEPHRGAGMVGTITVE 127


>tr|B7K170|B7K170_SYNP8 Plastocyanin OS=Synechococcus sp. (strain
           PCC 8801 / RF-1) GN=PCC8801_2240 PE=3 SV=1
          Length = 119

 Score = 44.3 bits (103), Expect = 0.003
 Identities = 20/43 (46%), Positives = 24/43 (55%)
 Frame = -3

Query: 349 MDENDLLTEDEPTFTAKVSTPGTYTYYCTHHKSANMVGTIIVK 221
           +   D+  +    F A  S PG YTYYC  H+ A MVG IIVK
Sbjct: 77  LSHKDMAFKAGEAFEATFSEPGEYTYYCAPHRGAGMVGKIIVK 119


>tr|B4C3N8|B4C3N8_9CHRO Plastocyanin OS=Cyanothece sp. PCC 8802
           GN=Cyan8802DRAFT_3655 PE=3 SV=1
          Length = 119

 Score = 44.3 bits (103), Expect = 0.003
 Identities = 20/43 (46%), Positives = 24/43 (55%)
 Frame = -3

Query: 349 MDENDLLTEDEPTFTAKVSTPGTYTYYCTHHKSANMVGTIIVK 221
           +   D+  +    F A  S PG YTYYC  H+ A MVG IIVK
Sbjct: 77  LSHKDMAFKAGEAFEATFSEPGEYTYYCAPHRGAGMVGKIIVK 119


>tr|B0JHN7|B0JHN7_MICAN Plastocyanin OS=Microcystis aeruginosa
           (strain NIES-843) GN=petE PE=4 SV=1
          Length = 125

 Score = 43.9 bits (102), Expect = 0.004
 Identities = 20/46 (43%), Positives = 26/46 (56%)
 Frame = -3

Query: 358 AASMDENDLLTEDEPTFTAKVSTPGTYTYYCTHHKSANMVGTIIVK 221
           A+ +    L      +F +  S PGTYTYYC  H+ A MVGTI V+
Sbjct: 80  ASKLSHKGLAFSAGESFESTFSEPGTYTYYCEPHRGAGMVGTITVQ 125


>tr|B4B8S2|B4B8S2_9CHRO Plastocyanin OS=Cyanothece sp. PCC 7822
           GN=Cyan7822DRAFT_5017 PE=3 SV=1
          Length = 127

 Score = 43.9 bits (102), Expect = 0.004
 Identities = 20/46 (43%), Positives = 25/46 (54%)
 Frame = -3

Query: 358 AASMDENDLLTEDEPTFTAKVSTPGTYTYYCTHHKSANMVGTIIVK 221
           A  +    L+     +FT     PGTYTYYC  H+ A MVGTI V+
Sbjct: 82  ATKISHKALVFAPGESFTTTFDQPGTYTYYCEPHRGAGMVGTITVE 127


>tr|A7D2K9|A7D2K9_9EURY Shikimate kinase OS=Halorubrum lacusprofundi
           ATCC 49239 GN=HlacDRAFT_1375 PE=3 SV=1
          Length = 232

 Score = 43.9 bits (102), Expect = 0.004
 Identities = 28/67 (41%), Positives = 37/67 (55%)
 Frame = -3

Query: 358 AASMDENDLLTEDEPTFTAKVSTPGTYTYYCTHHKSANMVGTIIVK*IT*PTSYTNPPLL 179
           AAS D + LL+E   TF     T G Y YYCT H++  M+G+IIV     P ++  P L 
Sbjct: 148 AASWDSS-LLSEAGATFEHTFETEGVYHYYCTPHETVGMIGSIIV---GEPDAHGQPAL- 202

Query: 178 CFVDEPP 158
              +EPP
Sbjct: 203 ---EEPP 206