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AcEST | BlastX Result : Swiss-Prot | BlastX Result : TrEMBL | AcESTcontig | About Libraries
NBDC - LSDB Archive
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AcEST | BlastX Result : Swiss-Prot | BlastX Result : TrEMBL | AcESTcontig | About Libraries
BP918541
Clone id YMU001_000114_G03
Library
Length 444
Definition Adiantum capillus-veneris mRNA. clone: YMU001_000114_G03.
Accession
Tissue type prothallium
Developmental stage -
Contig ID
Sequence 
CTGTACAATCATTTGAAACGCTTTCTTTGGATAGCGCACTGTTGCGACTATCCTCATCAC
AGTGTGTCCTCATGTGACATTGATAAGGTTGTTCTAAAAAAGCCCACCTAGTATCATGTT
TGTAACTACCTACTTGTACGGCCATGGTACTCTTTTTTACAACATTCTGGTTGAAGCAGT
GGCCTTACCTTTACCATCAGATTGCAGGGAGAAGCTAGAACAAGCGTCTTTGCGGCAGAA
TCTTAGGGATCCCGAAAAGAGGTGAAATTAGAGCTTCTGGACTTCCATCTTTTCTAAATG
TCTTGTATGACCATGTCAAGCTCAAAATACCTAGCTCTTGGCCATTTCTTTCCTCCATTG
ATTGCCAAGATTTTGGCAATCATATAACAAACTCTGGCTACTTATGTCCTGTGCGAATCG
TACATTCAGTACTTAAAACCCCAA
■■Homology search results ■■ -
sp_hit_id Q8CK11
Definition sp|Q8CK11|UVRB_STRCO UvrABC system protein B OS=Streptomyces coelicolor
Align length 39
Score (bit) 31.6
E-value 1.5
Report 
BLASTX 2.2.19 [Nov-02-2008]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= BP918541|Adiantum capillus-veneris mRNA, clone:
YMU001_000114_G03.
         (444 letters)

Database: uniprot_sprot.fasta 
           412,525 sequences; 148,809,765 total letters

Searching..................................................done



                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

sp|Q8CK11|UVRB_STRCO UvrABC system protein B OS=Streptomyces coe...    32   1.5  
sp|Q7MAR1|SYK_WOLSU Lysyl-tRNA synthetase OS=Wolinella succinoge...    30   5.9  
sp|Q829Y6|UVRB_STRAW UvrABC system protein B OS=Streptomyces ave...    29   7.7  
sp|Q9N4D6|SESN_CAEEL Sestrin homolog OS=Caenorhabditis elegans G...    29   10.0 

>sp|Q8CK11|UVRB_STRCO UvrABC system protein B OS=Streptomyces
           coelicolor GN=uvrB PE=3 SV=1
          Length = 712

 Score = 31.6 bits (70), Expect = 1.5
 Identities = 13/39 (33%), Positives = 22/39 (56%)
 Frame = -3

Query: 376 PKSWQSMEERNGQELGILSLTWSYKTFRKDGSPEALISP 260
           P  W+  +ER GQ + + +   +Y+  R DG+ E +I P
Sbjct: 384 PLKWEEFQERIGQTVYLSATPGAYELSRSDGAVEQIIRP 422


>sp|Q7MAR1|SYK_WOLSU Lysyl-tRNA synthetase OS=Wolinella succinogenes
           GN=lysS PE=3 SV=1
          Length = 507

 Score = 29.6 bits (65), Expect = 5.9
 Identities = 17/48 (35%), Positives = 26/48 (54%), Gaps = 4/48 (8%)
 Frame = -3

Query: 364 QSMEERNGQELGILSLTWSYKTFRKDGS-PEALISPLF---GIPKILP 233
           + M+  +  E  ++   W+YKT+ +  S  E L   LF   G+PKILP
Sbjct: 257 EGMDHSHNPEFTMIEFYWAYKTYHELMSLTEELFGYLFERLGLPKILP 304


>sp|Q829Y6|UVRB_STRAW UvrABC system protein B OS=Streptomyces
           avermitilis GN=uvrB PE=3 SV=1
          Length = 713

 Score = 29.3 bits (64), Expect = 7.7
 Identities = 13/39 (33%), Positives = 20/39 (51%)
 Frame = -3

Query: 376 PKSWQSMEERNGQELGILSLTWSYKTFRKDGSPEALISP 260
           P  W+  +ER GQ + + +    Y+  R DG  E +I P
Sbjct: 384 PLKWEEFQERIGQAVYLSATPGKYELSRGDGFVEQIIRP 422


>sp|Q9N4D6|SESN_CAEEL Sestrin homolog OS=Caenorhabditis elegans
           GN=Y74C9A.5 PE=2 SV=3
          Length = 474

 Score = 28.9 bits (63), Expect = 10.0
 Identities = 10/21 (47%), Positives = 15/21 (71%)
 Frame = -3

Query: 352 ERNGQELGILSLTWSYKTFRK 290
           E+ GQ++ +L + WSY  FRK
Sbjct: 84  EKGGQQMWLLGIDWSYMKFRK 104
tr_hit_id A9SV79
Definition tr|A9SV79|A9SV79_PHYPA Predicted protein OS=Physcomitrella patens subsp. patens
Align length 30
Score (bit) 38.1
E-value 0.22
Report 
BLASTX 2.2.19 [Nov-02-2008]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= BP918541|Adiantum capillus-veneris mRNA, clone:
YMU001_000114_G03.
         (444 letters)

Database: uniprot_trembl.fasta 
           7,341,751 sequences; 2,391,615,440 total letters

Searching..................................................done



                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

tr|A9SV79|A9SV79_PHYPA Predicted protein OS=Physcomitrella paten...    38   0.22 
tr|A9SJH4|A9SJH4_PHYPA Predicted protein OS=Physcomitrella paten...    37   0.37 
tr|A9RQL4|A9RQL4_PHYPA Predicted protein OS=Physcomitrella paten...    37   0.37 
tr|A9RJK1|A9RJK1_PHYPA Predicted protein OS=Physcomitrella paten...    37   0.37 
tr|A9T0A2|A9T0A2_PHYPA Predicted protein OS=Physcomitrella paten...    36   0.83 
tr|A9TTH2|A9TTH2_PHYPA Predicted protein OS=Physcomitrella paten...    36   1.1  
tr|A9T1K7|A9T1K7_PHYPA Predicted protein OS=Physcomitrella paten...    36   1.1  
tr|A9SVJ1|A9SVJ1_PHYPA Predicted protein OS=Physcomitrella paten...    35   1.4  
tr|A9SGE1|A9SGE1_PHYPA Predicted protein OS=Physcomitrella paten...    35   1.4  
tr|A9TS49|A9TS49_PHYPA Predicted protein OS=Physcomitrella paten...    35   1.8  
tr|A9RTK7|A9RTK7_PHYPA Predicted protein OS=Physcomitrella paten...    35   1.8  
tr|A9RKH8|A9RKH8_PHYPA Predicted protein OS=Physcomitrella paten...    35   1.8  
tr|A9TQ03|A9TQ03_PHYPA Predicted protein OS=Physcomitrella paten...    35   2.4  
tr|A9TPW3|A9TPW3_PHYPA Predicted protein OS=Physcomitrella paten...    35   2.4  
tr|A9TH86|A9TH86_PHYPA Predicted protein OS=Physcomitrella paten...    35   2.4  
tr|A9TAE5|A9TAE5_PHYPA Predicted protein OS=Physcomitrella paten...    35   2.4  
tr|A9RW48|A9RW48_PHYPA Predicted protein OS=Physcomitrella paten...    35   2.4  
tr|A9RBV1|A9RBV1_PHYPA Predicted protein OS=Physcomitrella paten...    35   2.4  
tr|Q4RPS7|Q4RPS7_TETNG Chromosome 12 SCAF15007, whole genome sho...    34   3.1  
tr|A9U483|A9U483_PHYPA Predicted protein OS=Physcomitrella paten...    34   3.1  
tr|A9SA66|A9SA66_PHYPA Predicted protein OS=Physcomitrella paten...    34   3.1  
tr|A9S529|A9S529_PHYPA Predicted protein OS=Physcomitrella paten...    34   3.1  
tr|A9U485|A9U485_PHYPA Predicted protein OS=Physcomitrella paten...    34   4.1  
tr|A9TU46|A9TU46_PHYPA Predicted protein OS=Physcomitrella paten...    34   4.1  
tr|A9TMU3|A9TMU3_PHYPA Predicted protein OS=Physcomitrella paten...    34   4.1  
tr|A9TKA1|A9TKA1_PHYPA Predicted protein OS=Physcomitrella paten...    34   4.1  
tr|A9TE82|A9TE82_PHYPA Predicted protein OS=Physcomitrella paten...    34   4.1  
tr|A9TE78|A9TE78_PHYPA Predicted protein OS=Physcomitrella paten...    34   4.1  
tr|A9T218|A9T218_PHYPA Predicted protein OS=Physcomitrella paten...    34   4.1  
tr|A9SVJ9|A9SVJ9_PHYPA Predicted protein OS=Physcomitrella paten...    34   4.1  

>tr|A9SV79|A9SV79_PHYPA Predicted protein OS=Physcomitrella patens
           subsp. patens GN=PHYPADRAFT_84427 PE=4 SV=1
          Length = 596

 Score = 38.1 bits (87), Expect = 0.22
 Identities = 16/30 (53%), Positives = 24/30 (80%)
 Frame = +2

Query: 170 VEAVALPLPSDCREKLEQASLRQNLRDPEK 259
           V+ VA  LP DC+E++E+AS  ++LRDP+K
Sbjct: 538 VKPVARLLPKDCKEQMEEASKEESLRDPKK 567


>tr|A9SJH4|A9SJH4_PHYPA Predicted protein OS=Physcomitrella patens
           subsp. patens GN=PHYPADRAFT_80261 PE=4 SV=1
          Length = 708

 Score = 37.4 bits (85), Expect = 0.37
 Identities = 16/30 (53%), Positives = 24/30 (80%)
 Frame = +2

Query: 170 VEAVALPLPSDCREKLEQASLRQNLRDPEK 259
           V+ VA PLP D +E++E+AS  ++LRDP+K
Sbjct: 558 VKLVAEPLPKDFKEQIEEASKEESLRDPKK 587


>tr|A9RQL4|A9RQL4_PHYPA Predicted protein OS=Physcomitrella patens
           subsp. patens GN=PHYPADRAFT_69317 PE=4 SV=1
          Length = 503

 Score = 37.4 bits (85), Expect = 0.37
 Identities = 17/30 (56%), Positives = 22/30 (73%)
 Frame = +2

Query: 170 VEAVALPLPSDCREKLEQASLRQNLRDPEK 259
           V+ VALPLP D  E +  AS++ NLRDP+K
Sbjct: 404 VKPVALPLPCDYEEMISGASIQPNLRDPKK 433


>tr|A9RJK1|A9RJK1_PHYPA Predicted protein OS=Physcomitrella patens
           subsp. patens GN=PHYPADRAFT_66979 PE=4 SV=1
          Length = 601

 Score = 37.4 bits (85), Expect = 0.37
 Identities = 16/29 (55%), Positives = 23/29 (79%)
 Frame = +2

Query: 170 VEAVALPLPSDCREKLEQASLRQNLRDPE 256
           V+ VA PLP D +E++E+AS  +NLRDP+
Sbjct: 363 VKPVAGPLPKDSKEQIEEASKEENLRDPK 391


>tr|A9T0A2|A9T0A2_PHYPA Predicted protein OS=Physcomitrella patens
           subsp. patens GN=PHYPADRAFT_86388 PE=4 SV=1
          Length = 235

 Score = 36.2 bits (82), Expect = 0.83
 Identities = 15/30 (50%), Positives = 24/30 (80%)
 Frame = +2

Query: 170 VEAVALPLPSDCREKLEQASLRQNLRDPEK 259
           V+ VA PLP D +E++E+AS  ++L+DP+K
Sbjct: 139 VKCVAGPLPEDFKEQIEEASKEESLKDPKK 168


>tr|A9TTH2|A9TTH2_PHYPA Predicted protein OS=Physcomitrella patens
           subsp. patens GN=PHYPADRAFT_96916 PE=4 SV=1
          Length = 504

 Score = 35.8 bits (81), Expect = 1.1
 Identities = 15/30 (50%), Positives = 24/30 (80%)
 Frame = +2

Query: 170 VEAVALPLPSDCREKLEQASLRQNLRDPEK 259
           V+ VA PLP D +E++++AS  ++LRDP+K
Sbjct: 408 VKPVAGPLPEDSKEQIKEASKEESLRDPKK 437


>tr|A9T1K7|A9T1K7_PHYPA Predicted protein OS=Physcomitrella patens
            subsp. patens GN=PHYPADRAFT_86852 PE=4 SV=1
          Length = 1148

 Score = 35.8 bits (81), Expect = 1.1
 Identities = 15/28 (53%), Positives = 22/28 (78%)
 Frame = +2

Query: 170  VEAVALPLPSDCREKLEQASLRQNLRDP 253
            V+ VA PLP DC+E++ +AS  ++LRDP
Sbjct: 943  VKPVAGPLPEDCKEQMGKASKEESLRDP 970


>tr|A9SVJ1|A9SVJ1_PHYPA Predicted protein OS=Physcomitrella patens
           subsp. patens GN=PHYPADRAFT_84546 PE=4 SV=1
          Length = 869

 Score = 35.4 bits (80), Expect = 1.4
 Identities = 15/28 (53%), Positives = 21/28 (75%)
 Frame = +2

Query: 170 VEAVALPLPSDCREKLEQASLRQNLRDP 253
           V+ +A PLP D +E++E+AS   NLRDP
Sbjct: 671 VKPIAGPLPEDSKEQMEEASKEANLRDP 698


>tr|A9SGE1|A9SGE1_PHYPA Predicted protein OS=Physcomitrella patens
           subsp. patens GN=PHYPADRAFT_79070 PE=4 SV=1
          Length = 774

 Score = 35.4 bits (80), Expect = 1.4
 Identities = 16/28 (57%), Positives = 21/28 (75%)
 Frame = +2

Query: 170 VEAVALPLPSDCREKLEQASLRQNLRDP 253
           V+ VA PLP D +EK+E+AS   +LRDP
Sbjct: 733 VKPVAGPLPEDSKEKMEEASKEASLRDP 760


>tr|A9TS49|A9TS49_PHYPA Predicted protein OS=Physcomitrella patens
           subsp. patens GN=PHYPADRAFT_96471 PE=4 SV=1
          Length = 852

 Score = 35.0 bits (79), Expect = 1.8
 Identities = 19/49 (38%), Positives = 27/49 (55%)
 Frame = +2

Query: 107 PSIMFVTTYLYGHGTLFYNILVEAVALPLPSDCREKLEQASLRQNLRDP 253
           P ++  T Y   H        V+ VA PLP D +E++E+AS   +LRDP
Sbjct: 741 PEVIVETRYKTAHKK------VKPVAGPLPEDSKEQMEEASKETSLRDP 783