NBDC - アーカイブトップ - ヘルプ
データベースの説明 | データ項目の説明 | ダウンロード | 利用許諾 | ヘルプ
AcEST | BlastX Result : Swiss-Prot | BlastX Result : TrEMBL | AcESTcontig | About Libraries
NBDC - LSDB Archive
Description of this DB | Description of data items | Download | License
AcEST | BlastX Result : Swiss-Prot | BlastX Result : TrEMBL | AcESTcontig | About Libraries
BP918542
Clone id YMU001_000114_G04
Library
Length 459
Definition Adiantum capillus-veneris mRNA. clone: YMU001_000114_G04.
Accession
Tissue type prothallium
Developmental stage -
Contig ID
Sequence 
AAAAAACTTCAGCTACAAATTTCCACAGGCCCCAAACTATTTCTTTACAGCAGTCCGTTT
TTTTACAAGAAATACCCAACATGGGCATCAAGCTCCTTGACCTCCTCATGAATCATATCC
CAAATACTTTTAGGAAATCAAATTTAAAGCAATGGCGGTATCCATCCTGCTCTCACCGCT
CTTCCAAAGTATAACTGCTATCTAGCTCCAACACTCCAGAAGCTAAACTACGTGGCCGCA
ACACAATGATTGTAGAAAAGGGTGTGGATTTCACAGAAGTCCCATCCTATGAGGTCGATT
TCCTCAGGCAAAGACAAACCAAAAGAGTTAAGGTTGAGGACAAATGACAAAAGACTTGCT
TGATCACATTAAGCTATAGATAACACGAGAAGTTTGGCTCCTAAAACCTGCACAATGCTG
ACTTGATAAAGCGCAACCCAGAAACATTAAGCGCCCAGT
■■Homology search results ■■ -
sp_hit_id Q92F56
Definition sp|Q92F56|TILS_LISIN Bifunctional protein tilS/hprT OS=Listeria innocua
Align length 38
Score (bit) 31.2
E-value 2.3
Report 
BLASTX 2.2.19 [Nov-02-2008]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= BP918542|Adiantum capillus-veneris mRNA, clone:
YMU001_000114_G04.
         (459 letters)

Database: uniprot_sprot.fasta 
           412,525 sequences; 148,809,765 total letters

Searching..................................................done



                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

sp|Q92F56|TILS_LISIN Bifunctional protein tilS/hprT OS=Listeria ...    31   2.3  
sp|Q571H0|NPA1P_MOUSE Nucleolar pre-ribosomal-associated protein...    31   2.3  
sp|P37472|HPRT_BACSU Hypoxanthine-guanine phosphoribosyltransfer...    30   6.6  
sp|P47029|YJI4_YEAST UPF0675 protein YJL084C OS=Saccharomyces ce...    29   8.6  
sp|Q9RBW3|HPAB1_PSESH Effector protein hopAB1 OS=Pseudomonas syr...    29   8.6  
sp|Q8RK12|HPAB1_PSESG Effector protein hopAB1 OS=Pseudomonas syr...    29   8.6  
sp|Q48B61|HPAB1_PSE14 Effector protein hopAB1 OS=Pseudomonas syr...    29   8.6  

>sp|Q92F56|TILS_LISIN Bifunctional protein tilS/hprT OS=Listeria
           innocua GN=tilS/hprT PE=3 SV=1
          Length = 648

 Score = 31.2 bits (69), Expect = 2.3
 Identities = 14/38 (36%), Positives = 23/38 (60%)
 Frame = +3

Query: 222 AKLRGRNTMIVEKGVDFTEVPSYEVDFLRQRQTKRVKV 335
           A + GR+ +I+E  +D     SY VD ++ R+ K VK+
Sbjct: 556 ASVEGRDVLIIEDIIDSGRTLSYLVDLIKYRKAKSVKL 593


>sp|Q571H0|NPA1P_MOUSE Nucleolar pre-ribosomal-associated protein 1
            OS=Mus musculus GN=Urb1 PE=2 SV=2
          Length = 2274

 Score = 31.2 bits (69), Expect = 2.3
 Identities = 18/43 (41%), Positives = 22/43 (51%), Gaps = 1/43 (2%)
 Frame = +3

Query: 30   PQTISLQQSVFLQEIPNMGIKLLDLLMNHIPNTFRK-SNLKQW 155
            P   +L      Q IP    K L +LM+H+PNT R  SN K W
Sbjct: 1313 PSKDALHLEALAQLIPFARTKDLHVLMDHLPNTLRTLSNHKSW 1355


>sp|P37472|HPRT_BACSU Hypoxanthine-guanine phosphoribosyltransferase
           OS=Bacillus subtilis GN=hprT PE=3 SV=1
          Length = 180

 Score = 29.6 bits (65), Expect = 6.6
 Identities = 19/77 (24%), Positives = 36/77 (46%)
 Frame = +3

Query: 105 LMNHIPNTFRKSNLKQWRYPSCSHRSSKV*LLSSSNTPEAKLRGRNTMIVEKGVDFTEVP 284
           L+ HI        +    Y + +  S +V ++   +T    + GR+ +I+E  +D     
Sbjct: 52  LIKHIDTYLEMDFMDVSSYGNSTVSSGEVKIIKDLDT---SVEGRDILIIEDIIDSGLTL 108

Query: 285 SYEVDFLRQRQTKRVKV 335
           SY V+  R R+ K +K+
Sbjct: 109 SYLVELFRYRKAKSIKI 125


>sp|P47029|YJI4_YEAST UPF0675 protein YJL084C OS=Saccharomyces
           cerevisiae GN=YJL084C PE=1 SV=2
          Length = 1046

 Score = 29.3 bits (64), Expect = 8.6
 Identities = 15/55 (27%), Positives = 27/55 (49%)
 Frame = +3

Query: 18  NFHRPQTISLQQSVFLQEIPNMGIKLLDLLMNHIPNTFRKSNLKQWRYPSCSHRS 182
           N +    I   + V    + +  ++ LD+L+ H+P+T    N +Q+   S SH S
Sbjct: 566 NLYHNSNIFFPKEVLSSPVLSPNVQPLDILIPHLPSTSLTRNSRQFNRNSKSHPS 620


>sp|Q9RBW3|HPAB1_PSESH Effector protein hopAB1 OS=Pseudomonas
           syringae pv. phaseolicola GN=hopAB1 PE=2 SV=1
          Length = 539

 Score = 29.3 bits (64), Expect = 8.6
 Identities = 22/76 (28%), Positives = 37/76 (48%), Gaps = 3/76 (3%)
 Frame = +3

Query: 45  LQQSVFLQEIPNM---GIKLLDLLMNHIPNTFRKSNLKQWRYPSCSHRSSKV*LLSSSNT 215
           +++ + LQ  PNM   GI    +L N +    R++  +Q    S   R +     SSS +
Sbjct: 130 VERDILLQHFPNMPMTGISSDSVLANELRQRLRQTVRQQRIQSSTPARLAD----SSSGS 185

Query: 216 PEAKLRGRNTMIVEKG 263
            +  L GR+TM++  G
Sbjct: 186 SQRSLIGRSTMLMTPG 201


>sp|Q8RK12|HPAB1_PSESG Effector protein hopAB1 OS=Pseudomonas
           syringae pv. glycinea GN=hopAB1 PE=2 SV=1
          Length = 523

 Score = 29.3 bits (64), Expect = 8.6
 Identities = 22/76 (28%), Positives = 37/76 (48%), Gaps = 3/76 (3%)
 Frame = +3

Query: 45  LQQSVFLQEIPNM---GIKLLDLLMNHIPNTFRKSNLKQWRYPSCSHRSSKV*LLSSSNT 215
           +++ + LQ  PNM   GI    +L N +    R++  +Q    S   R +     SSS +
Sbjct: 130 VERDILLQHFPNMLMTGISSDSVLANELRQRLRQTVRQQRIQSSTPARLAD----SSSGS 185

Query: 216 PEAKLRGRNTMIVEKG 263
            +  L GR+TM++  G
Sbjct: 186 SQRSLIGRSTMLMTPG 201


>sp|Q48B61|HPAB1_PSE14 Effector protein hopAB1 OS=Pseudomonas
           syringae pv. phaseolicola (strain 1448A / Race 6)
           GN=hopAB1 PE=2 SV=1
          Length = 539

 Score = 29.3 bits (64), Expect = 8.6
 Identities = 22/76 (28%), Positives = 37/76 (48%), Gaps = 3/76 (3%)
 Frame = +3

Query: 45  LQQSVFLQEIPNM---GIKLLDLLMNHIPNTFRKSNLKQWRYPSCSHRSSKV*LLSSSNT 215
           +++ + LQ  PNM   GI    +L N +    R++  +Q    S   R +     SSS +
Sbjct: 130 VERDILLQHFPNMPMTGISSDSVLANELRQRLRQTVRQQRIQSSTPARLAD----SSSGS 185

Query: 216 PEAKLRGRNTMIVEKG 263
            +  L GR+TM++  G
Sbjct: 186 SQRSLIGRSTMLMTPG 201
tr_hit_id Q23DV7
Definition tr|Q23DV7|Q23DV7_TETTH Putative uncharacterized protein OS=Tetrahymena thermophila SB210
Align length 53
Score (bit) 33.9
E-value 4.1
Report 
BLASTX 2.2.19 [Nov-02-2008]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= BP918542|Adiantum capillus-veneris mRNA, clone:
YMU001_000114_G04.
         (459 letters)

Database: uniprot_trembl.fasta 
           7,341,751 sequences; 2,391,615,440 total letters

Searching..................................................done



                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

tr|Q23DV7|Q23DV7_TETTH Putative uncharacterized protein OS=Tetra...    34   4.1  
tr|B0S4H7|B0S4H7_FINM2 Putative uncharacterized protein OS=Fineg...    33   5.4  
tr|B1SUV6|B1SUV6_9BACI Hypoxanthine phosphoribosyltransferase OS...    33   9.2  

>tr|Q23DV7|Q23DV7_TETTH Putative uncharacterized protein
           OS=Tetrahymena thermophila SB210 GN=TTHERM_00043860 PE=4
           SV=1
          Length = 1123

 Score = 33.9 bits (76), Expect = 4.1
 Identities = 22/53 (41%), Positives = 32/53 (60%), Gaps = 4/53 (7%)
 Frame = +3

Query: 18  NFHRPQTISLQQSVFLQEIP---NMGIKLLDLLMNHIPNTFRKSNLKQ-WRYP 164
           N  R +TI   QS+  Q IP   ++ I +LDL++ +I   F + N+KQ WRYP
Sbjct: 348 NDERSETIRFGQSLINQYIPCFEDISI-VLDLVILNIKKLFEEGNIKQDWRYP 399


>tr|B0S4H7|B0S4H7_FINM2 Putative uncharacterized protein
           OS=Finegoldia magna (strain ATCC 29328) GN=FMG_P0119
           PE=4 SV=1
          Length = 1039

 Score = 33.5 bits (75), Expect = 5.4
 Identities = 19/84 (22%), Positives = 44/84 (52%)
 Frame = +3

Query: 93  LLDLLMNHIPNTFRKSNLKQWRYPSCSHRSSKV*LLSSSNTPEAKLRGRNTMIVEKGVDF 272
           + ++ +N   NT   + +K+    +   + +++   ++      KL+   T +V+KGV+ 
Sbjct: 386 ITNIAINSKDNTGSSTEVKK---ETKEEKKTEIIKYTTETKQNPKLKKGETKVVQKGVNG 442

Query: 273 TEVPSYEVDFLRQRQTKRVKVEDK 344
           T+   Y+V +   ++TKR K+ +K
Sbjct: 443 TKEIIYKVTYENGKETKREKISEK 466


>tr|B1SUV6|B1SUV6_9BACI Hypoxanthine phosphoribosyltransferase
           OS=Geobacillus sp. WCH70 GN=GWCH70DRAFT_2699 PE=4 SV=1
          Length = 181

 Score = 32.7 bits (73), Expect = 9.2
 Identities = 21/77 (27%), Positives = 35/77 (45%)
 Frame = +3

Query: 105 LMNHIPNTFRKSNLKQWRYPSCSHRSSKV*LLSSSNTPEAKLRGRNTMIVEKGVDFTEVP 284
           L+ HI        +    Y + +  S +V +L   NT    + GR+ +I+E  +D     
Sbjct: 53  LLKHIDTYLEMDFMDVSSYGNATVSSGEVKILKDLNT---SVEGRDILIIEDIIDSGLTL 109

Query: 285 SYEVDFLRQRQTKRVKV 335
           SY VD  R R+   +K+
Sbjct: 110 SYLVDLFRYRKANSIKI 126