NBDC - アーカイブトップ - ヘルプ
データベースの説明 | データ項目の説明 | ダウンロード | 利用許諾 | ヘルプ
AcEST | BlastX Result : Swiss-Prot | BlastX Result : TrEMBL | AcESTcontig | About Libraries
NBDC - LSDB Archive
Description of this DB | Description of data items | Download | License
AcEST | BlastX Result : Swiss-Prot | BlastX Result : TrEMBL | AcESTcontig | About Libraries
BP918544
Clone id YMU001_000114_G06
Library
Length 561
Definition Adiantum capillus-veneris mRNA. clone: YMU001_000114_G06.
Accession
Tissue type prothallium
Developmental stage -
Contig ID -
Sequence 
AGAATTCGCGGCCGCAGGAATTTTGACTTGTGTGAAAATCTTTTTAGTCACAAGACGTTA
ACTTTACATTCAATTGGATATATGATACAGCAGAGTCATGGCTAGCTGATCTCTTCCTTT
AGGCACACGCATTGAGCCTTCCAAATCGATCCCACAACACTAACGGAAAACCTTGAGAGC
AACCAGCACATCTCCACCAATGCTTAAACAAGAATCAATGTTGGTAAGCTTGATGGAGTA
TCACCAAGCTACATCTGCGTGCTGTCTTCTAGTGTTGAATGGGGATGGTCATGCCTGGTC
CATGATTGATGCAAAGGGCCCACCCTCAGACTTTTGCTTGAAGATAAGTATGATTGCAAA
ATCTTTGTTTCCACTATCAAGCCTGTGTCTTTACTGTCAGAGTATCCCCCCTTCTCACAA
GGCGAGTACTCGAGATGAAGGCAGATCGATGACTCACGTTCACAAAAATCCTACCAGCAT
TCAGCCTTATATCCGTCATTTGGTAGTCCCTTGCGGTAGAGCTCAAGTGAATGCTCTCCT
TCTTGGTGCATTCTATTCTCC
■■Homology search results ■■ -
sp_hit_id Q39DN4
Definition sp|Q39DN4|NADA_BURS3 Quinolinate synthetase A OS=Burkholderia sp. (strain 383)
Align length 41
Score (bit) 32.0
E-value 2.0
Report 
BLASTX 2.2.19 [Nov-02-2008]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= BP918544|Adiantum capillus-veneris mRNA, clone:
YMU001_000114_G06.
         (537 letters)

Database: uniprot_sprot.fasta 
           412,525 sequences; 148,809,765 total letters

Searching..................................................done



                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

sp|Q39DN4|NADA_BURS3 Quinolinate synthetase A OS=Burkholderia sp...    32   2.0  
sp|Q0BCL4|NADA_BURCM Quinolinate synthetase A OS=Burkholderia am...    32   2.0  
sp|A0K9S9|NADA_BURCH Quinolinate synthetase A OS=Burkholderia ce...    32   2.0  
sp|Q1BUA7|NADA_BURCA Quinolinate synthetase A OS=Burkholderia ce...    32   2.0  
sp|Q2T0G7|NADA_BURTA Quinolinate synthetase A OS=Burkholderia th...    32   2.6  
sp|Q63WH7|NADA_BURPS Quinolinate synthetase A OS=Burkholderia ps...    32   2.6  
sp|A3N6Q4|NADA_BURP6 Quinolinate synthetase A OS=Burkholderia ps...    32   2.6  
sp|A3NSD8|NADA_BURP0 Quinolinate synthetase A OS=Burkholderia ps...    32   2.6  
sp|A1V6U5|NADA_BURMS Quinolinate synthetase A OS=Burkholderia ma...    32   2.6  
sp|Q62HM0|NADA_BURMA Quinolinate synthetase A OS=Burkholderia ma...    32   2.6  
sp|A2S4Z4|NADA_BURM9 Quinolinate synthetase A OS=Burkholderia ma...    32   2.6  
sp|A3MN00|NADA_BURM7 Quinolinate synthetase A OS=Burkholderia ma...    32   2.6  
sp|Q8XWM5|NADA_RALSO Quinolinate synthetase A OS=Ralstonia solan...    31   3.4  
sp|Q9UN73|PCDA6_HUMAN Protocadherin alpha-6 OS=Homo sapiens GN=P...    30   5.7  
sp|P31515|FST_XENLA Follistatin OS=Xenopus laevis GN=fst PE=1 SV=2     30   7.4  
sp|Q8RUN1|ACA3_ORYSJ Calcium-transporting ATPase 3, plasma membr...    30   7.4  
sp|Q4G353|RK6_EMIHU 50S ribosomal protein L6, chloroplastic OS=E...    30   7.5  
sp|Q8TDW7|FAT3_HUMAN Protocadherin Fat 3 OS=Homo sapiens GN=FAT3...    30   9.7  
sp|O08688|CAN5_MOUSE Calpain-5 OS=Mus musculus GN=Capn5 PE=2 SV=1      30   9.7  

>sp|Q39DN4|NADA_BURS3 Quinolinate synthetase A OS=Burkholderia sp.
           (strain 383) GN=nadA PE=3 SV=1
          Length = 378

 Score = 32.0 bits (71), Expect = 2.0
 Identities = 16/41 (39%), Positives = 23/41 (56%)
 Frame = +1

Query: 256 WGWSCLVHD*CKGPTLRLLLEDKYDCKIFVSTIKPVSLLSE 378
           W  SCLVHD  KG  L LL  +  D K+ V    P +++++
Sbjct: 208 WQGSCLVHDEFKGIELDLLRAEYPDAKVLVHPESPENVVAQ 248


>sp|Q0BCL4|NADA_BURCM Quinolinate synthetase A OS=Burkholderia
           ambifaria (strain ATCC BAA-244 / AMMD) GN=nadA PE=3 SV=1
          Length = 378

 Score = 32.0 bits (71), Expect = 2.0
 Identities = 16/41 (39%), Positives = 23/41 (56%)
 Frame = +1

Query: 256 WGWSCLVHD*CKGPTLRLLLEDKYDCKIFVSTIKPVSLLSE 378
           W  SCLVHD  KG  L LL  +  D K+ V    P +++++
Sbjct: 208 WQGSCLVHDEFKGIELDLLRAEYPDAKVLVHPESPENVVAQ 248


>sp|A0K9S9|NADA_BURCH Quinolinate synthetase A OS=Burkholderia
           cenocepacia (strain HI2424) GN=nadA PE=3 SV=1
          Length = 378

 Score = 32.0 bits (71), Expect = 2.0
 Identities = 16/41 (39%), Positives = 23/41 (56%)
 Frame = +1

Query: 256 WGWSCLVHD*CKGPTLRLLLEDKYDCKIFVSTIKPVSLLSE 378
           W  SCLVHD  KG  L LL  +  D K+ V    P +++++
Sbjct: 208 WQGSCLVHDEFKGIELDLLRAEYPDAKVLVHPESPENVVAQ 248


>sp|Q1BUA7|NADA_BURCA Quinolinate synthetase A OS=Burkholderia
           cenocepacia (strain AU 1054) GN=nadA PE=3 SV=1
          Length = 378

 Score = 32.0 bits (71), Expect = 2.0
 Identities = 16/41 (39%), Positives = 23/41 (56%)
 Frame = +1

Query: 256 WGWSCLVHD*CKGPTLRLLLEDKYDCKIFVSTIKPVSLLSE 378
           W  SCLVHD  KG  L LL  +  D K+ V    P +++++
Sbjct: 208 WQGSCLVHDEFKGIELDLLRAEYPDAKVLVHPESPENVVAQ 248


>sp|Q2T0G7|NADA_BURTA Quinolinate synthetase A OS=Burkholderia
           thailandensis (strain E264 / ATCC 700388 / DSM 13276 /
           CIP 106301) GN=nadA PE=3 SV=1
          Length = 378

 Score = 31.6 bits (70), Expect = 2.6
 Identities = 17/40 (42%), Positives = 21/40 (52%)
 Frame = +1

Query: 256 WGWSCLVHD*CKGPTLRLLLEDKYDCKIFVSTIKPVSLLS 375
           W  SCLVHD  KG  L LL  +  D KI V    P  +++
Sbjct: 208 WQGSCLVHDEFKGIELDLLRNEYPDAKILVHPESPEGVVA 247


>sp|Q63WH7|NADA_BURPS Quinolinate synthetase A OS=Burkholderia
           pseudomallei GN=nadA PE=3 SV=1
          Length = 378

 Score = 31.6 bits (70), Expect = 2.6
 Identities = 17/40 (42%), Positives = 21/40 (52%)
 Frame = +1

Query: 256 WGWSCLVHD*CKGPTLRLLLEDKYDCKIFVSTIKPVSLLS 375
           W  SCLVHD  KG  L LL  +  D KI V    P  +++
Sbjct: 208 WQGSCLVHDEFKGIELDLLRHEYPDAKILVHPESPEGVVA 247


>sp|A3N6Q4|NADA_BURP6 Quinolinate synthetase A OS=Burkholderia
           pseudomallei (strain 668) GN=nadA PE=3 SV=1
          Length = 378

 Score = 31.6 bits (70), Expect = 2.6
 Identities = 17/40 (42%), Positives = 21/40 (52%)
 Frame = +1

Query: 256 WGWSCLVHD*CKGPTLRLLLEDKYDCKIFVSTIKPVSLLS 375
           W  SCLVHD  KG  L LL  +  D KI V    P  +++
Sbjct: 208 WQGSCLVHDEFKGIELDLLRHEYPDAKILVHPESPEGVVA 247


>sp|A3NSD8|NADA_BURP0 Quinolinate synthetase A OS=Burkholderia
           pseudomallei (strain 1106a) GN=nadA PE=3 SV=1
          Length = 378

 Score = 31.6 bits (70), Expect = 2.6
 Identities = 17/40 (42%), Positives = 21/40 (52%)
 Frame = +1

Query: 256 WGWSCLVHD*CKGPTLRLLLEDKYDCKIFVSTIKPVSLLS 375
           W  SCLVHD  KG  L LL  +  D KI V    P  +++
Sbjct: 208 WQGSCLVHDEFKGIELDLLRREYPDAKILVHPESPEGVVA 247


>sp|A1V6U5|NADA_BURMS Quinolinate synthetase A OS=Burkholderia
           mallei (strain SAVP1) GN=nadA PE=3 SV=1
          Length = 378

 Score = 31.6 bits (70), Expect = 2.6
 Identities = 17/40 (42%), Positives = 21/40 (52%)
 Frame = +1

Query: 256 WGWSCLVHD*CKGPTLRLLLEDKYDCKIFVSTIKPVSLLS 375
           W  SCLVHD  KG  L LL  +  D KI V    P  +++
Sbjct: 208 WQGSCLVHDEFKGIELDLLRHEYPDAKILVHPESPEGVVA 247


>sp|Q62HM0|NADA_BURMA Quinolinate synthetase A OS=Burkholderia
           mallei GN=nadA PE=3 SV=1
          Length = 378

 Score = 31.6 bits (70), Expect = 2.6
 Identities = 17/40 (42%), Positives = 21/40 (52%)
 Frame = +1

Query: 256 WGWSCLVHD*CKGPTLRLLLEDKYDCKIFVSTIKPVSLLS 375
           W  SCLVHD  KG  L LL  +  D KI V    P  +++
Sbjct: 208 WQGSCLVHDEFKGIELDLLRHEYPDAKILVHPESPEGVVA 247
tr_hit_id A9RLK3
Definition tr|A9RLK3|A9RLK3_PHYPA Predicted protein OS=Physcomitrella patens subsp. patens
Align length 42
Score (bit) 37.0
E-value 0.65
Report 
BLASTX 2.2.19 [Nov-02-2008]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= BP918544|Adiantum capillus-veneris mRNA, clone:
YMU001_000114_G06.
         (537 letters)

Database: uniprot_trembl.fasta 
           7,341,751 sequences; 2,391,615,440 total letters

Searching..................................................done



                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

tr|A9RLK3|A9RLK3_PHYPA Predicted protein OS=Physcomitrella paten...    37   0.65 
tr|A9T8M4|A9T8M4_PHYPA Predicted protein OS=Physcomitrella paten...    36   1.1  
tr|A4I242|A4I242_LEIIN Putative uncharacterized protein OS=Leish...    35   2.5  
tr|Q21U96|Q21U96_RHOFD Histidinol dehydrogenase OS=Rhodoferax fe...    33   7.2  
tr|A9UUX5|A9UUX5_MONBE Predicted protein OS=Monosiga brevicollis...    33   7.2  
tr|B2JDZ5|B2JDZ5_BURP8 Quinolinate synthetase complex, A subunit...    33   7.3  
tr|A9AGP2|A9AGP2_BURM1 Quinolinate synthetase complex, A subunit...    33   9.5  
tr|B3D2V0|B3D2V0_BURM1 Quinolinate synthase OS=Burkholderia mult...    33   9.5  

>tr|A9RLK3|A9RLK3_PHYPA Predicted protein OS=Physcomitrella patens
            subsp. patens GN=PHYPADRAFT_67750 PE=4 SV=1
          Length = 1067

 Score = 37.0 bits (84), Expect = 0.65
 Identities = 19/42 (45%), Positives = 29/42 (69%)
 Frame = -3

Query: 499  SSTARDYQMTDIRLNAGRIFVNVSHRSAFISSTRLVRRGDTL 374
            + +A + Q T+IRL+AGRI VNVSHR+  I+ +   +R D +
Sbjct: 971  AGSANNCQRTNIRLDAGRIHVNVSHRTGSINQSE--KRNDLI 1010


>tr|A9T8M4|A9T8M4_PHYPA Predicted protein OS=Physcomitrella patens
            subsp. patens GN=PHYPADRAFT_89525 PE=4 SV=1
          Length = 1884

 Score = 36.2 bits (82), Expect = 1.1
 Identities = 16/42 (38%), Positives = 27/42 (64%)
 Frame = -3

Query: 487  RDYQMTDIRLNAGRIFVNVSHRSAFISSTRLVRRGDTLTVKT 362
            ++ Q T+IRL  GRI VNV  RS  ++++   +R D + V++
Sbjct: 1843 QNLQKTNIRLEGGRIHVNVCRRSGTVTTSHYEKRADAIAVES 1884


>tr|A4I242|A4I242_LEIIN Putative uncharacterized protein
           OS=Leishmania infantum GN=LinJ26.1090 PE=4 SV=1
          Length = 1728

 Score = 35.0 bits (79), Expect = 2.5
 Identities = 31/115 (26%), Positives = 47/115 (40%)
 Frame = +2

Query: 113 PSKSIPQH*RKTLRATSTSPPMLKQESMLVSLMEYHQATSACCLLVLNGDGHAWSMIDAK 292
           P+ S P H    + ATST  P+ K  S   +L+E+HQ          +   H  +  D  
Sbjct: 623 PNSSTPAHSAVAVSATSTCHPLPKTASRKRALVEFHQIPEMQTCAHRSRKPHVSATDDLN 682

Query: 293 GPPSDFCLKISMIAKSLFPLSSLCLYCQSIPPSHKASTRDEGRSMTHVHKNPTSI 457
           G  S+     S++A +    S +       P  H +S  + G S T +  N  SI
Sbjct: 683 GDGSEASQLSSVLANT--DSSKV-----GTPSPHTSSFSEHGISATGIRTNDPSI 730


>tr|Q21U96|Q21U96_RHOFD Histidinol dehydrogenase OS=Rhodoferax
           ferrireducens (strain DSM 15236 / ATCC BAA-621 / T118)
           GN=Rfer_2946 PE=3 SV=1
          Length = 447

 Score = 33.5 bits (75), Expect = 7.2
 Identities = 29/131 (22%), Positives = 58/131 (44%), Gaps = 3/131 (2%)
 Frame = +2

Query: 149 LRATSTSPPMLKQESMLVS---LMEYHQATSACCLLVLNGDGHAWSMIDAKGPPSDFCLK 319
           L+A   + P +++E++  +   +  YH+A    C       G +WS +DA G        
Sbjct: 79  LKAAFEAIPAVQREALQAAAARVRSYHEAQKKAC-------GESWSYVDADG-------- 123

Query: 320 ISMIAKSLFPLSSLCLYCQSIPPSHKASTRDEGRSMTHVHKNPTSIQPYIRHLVVPCGRA 499
            +++ + + PL  + +Y      ++ +S       M  +  +   +   I  +VVP  + 
Sbjct: 124 -TLLGQKVTPLDRVGIYVPGGKAAYPSSVL-----MNAIPAHVAGVGEII--MVVPTPKG 175

Query: 500 QVNALLLGAFY 532
           + NAL+L A Y
Sbjct: 176 EKNALVLAAAY 186


>tr|A9UUX5|A9UUX5_MONBE Predicted protein OS=Monosiga brevicollis
           GN=23819 PE=4 SV=1
          Length = 748

 Score = 33.5 bits (75), Expect = 7.2
 Identities = 20/67 (29%), Positives = 32/67 (47%), Gaps = 8/67 (11%)
 Frame = +2

Query: 347 PLSSLCLYCQSIPPSHKASTRDEGRSMTHV-----HKNPTSIQPYIRHLVVPCGRAQ--- 502
           P   +C +  S  P+  ++T D   ++ HV      + PT   P + + +V C RAQ   
Sbjct: 132 PARHICFFSLSCQPTRVSTTLDVSATLNHVVQSLLRERPTEDHPVVLNALVACVRAQPAL 191

Query: 503 VNALLLG 523
            +A LLG
Sbjct: 192 ADAALLG 198


>tr|B2JDZ5|B2JDZ5_BURP8 Quinolinate synthetase complex, A subunit
           OS=Burkholderia phymatum (strain DSM 17167 / STM815)
           GN=Bphy_0580 PE=4 SV=1
          Length = 376

 Score = 33.5 bits (75), Expect = 7.3
 Identities = 17/41 (41%), Positives = 23/41 (56%)
 Frame = +1

Query: 256 WGWSCLVHD*CKGPTLRLLLEDKYDCKIFVSTIKPVSLLSE 378
           W  SCLVHD  KG  L LL  +  D K+ V    P S++++
Sbjct: 206 WQGSCLVHDEFKGVELDLLRAEYPDAKVLVHPESPESVVAQ 246


>tr|A9AGP2|A9AGP2_BURM1 Quinolinate synthetase complex, A subunit
           OS=Burkholderia multivorans (strain ATCC 17616 / 249)
           GN=Bmul_0789 PE=4 SV=1
          Length = 391

 Score = 33.1 bits (74), Expect = 9.5
 Identities = 17/41 (41%), Positives = 23/41 (56%)
 Frame = +1

Query: 256 WGWSCLVHD*CKGPTLRLLLEDKYDCKIFVSTIKPVSLLSE 378
           W  SCLVHD  KG  L LL  +  D K+ V    P S++++
Sbjct: 221 WQGSCLVHDEFKGIELDLLRAEYPDAKVLVHPESPESVVAQ 261


>tr|B3D2V0|B3D2V0_BURM1 Quinolinate synthase OS=Burkholderia
           multivorans (strain ATCC 17616 / 249) GN=nadA PE=4 SV=1
          Length = 378

 Score = 33.1 bits (74), Expect = 9.5
 Identities = 17/41 (41%), Positives = 23/41 (56%)
 Frame = +1

Query: 256 WGWSCLVHD*CKGPTLRLLLEDKYDCKIFVSTIKPVSLLSE 378
           W  SCLVHD  KG  L LL  +  D K+ V    P S++++
Sbjct: 208 WQGSCLVHDEFKGIELDLLRAEYPDAKVLVHPESPESVVAQ 248