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NBDC - LSDB Archive
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BP918549
Clone id YMU001_000114_G11
Library
Length 504
Definition Adiantum capillus-veneris mRNA. clone: YMU001_000114_G11.
Accession
Tissue type prothallium
Developmental stage -
Contig ID -
Sequence 
GAGTCATCAATCTCTGATGAAGGTTCCTCTTGTCAGAGTAGCAACCTGGAGAACAATAAT
GAGGTGTTGCTTGCTCACAAACCATCAAATGAGCTGGTGGATATGAAGCTTAGCAGGATT
CGCACTGCAGAGACACTAAAGGAGAAGGCGGCCATGGTTGGTGCGTCTCCAAAGAGCAGA
CACGAGCACAATGGCAATGAAGAGAACCTTGCCCACAGCACAGCAGCAAATAGGTTGGGG
AAGAAGCATAGTGGTTTGCCTGCAAATACGCCTCGCAGATCTCTAAAACAGCAACCATCC
AGTCCACGGTTGGCGAAGGGCAACCCAGGAAAGGTTCTGAGGCCTTGGTATTAGTAGGTC
TTATTATGTATAAGTGTAATTTTGTCTCAAAAAGTACTGAATATAGTTGTTATAGCTTCA
TGTAGAAGTGTTCTGCTGTGATACACAATTGAACAGAGGCAAATCGCCATTCTTTTAGGA
AAAATTCGCGGTCGCGAATTCTTC
■■Homology search results ■■ -
sp_hit_id Q9J6K8
Definition sp|Q9J6K8|POLS_RUBVD Structural polyprotein OS=Rubella virus (strain Cendehill)
Align length 80
Score (bit) 32.3
E-value 1.2
Report 
BLASTX 2.2.19 [Nov-02-2008]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= BP918549|Adiantum capillus-veneris mRNA, clone:
YMU001_000114_G11.
         (483 letters)

Database: uniprot_sprot.fasta 
           412,525 sequences; 148,809,765 total letters

Searching..................................................done



                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

sp|Q9J6K8|POLS_RUBVD Structural polyprotein OS=Rubella virus (st...    32   1.2  
sp|P19725|POLS_RUBVR Structural polyprotein OS=Rubella virus (st...    32   1.5  
sp|Q8VA10|POLS_RUBVN Structural polyprotein OS=Rubella virus (st...    32   1.5  
sp|P08563|POLS_RUBVM Structural polyprotein OS=Rubella virus (st...    32   1.5  
sp|P07566|POLS_RUBVT Structural polyprotein OS=Rubella virus (st...    32   2.0  
sp|Q86T29|ZN605_HUMAN Zinc finger protein 605 OS=Homo sapiens GN...    32   2.0  
sp|P08564|POLS_RUBVV Structural polyprotein OS=Rubella virus (st...    31   3.4  
sp|Q99IE6|POLS_RUBVO Structural polyprotein OS=Rubella virus (st...    31   3.4  
sp|Q8CIZ8|VWF_MOUSE von Willebrand factor OS=Mus musculus GN=Vwf...    31   3.4  
sp|P04155|TFF1_HUMAN Trefoil factor 1 OS=Homo sapiens GN=TFF1 PE...    31   3.4  
sp|O43918|AIRE_HUMAN Autoimmune regulator OS=Homo sapiens GN=AIR...    30   4.4  
sp|O44783|SPY_DROME Protein sprouty OS=Drosophila melanogaster G...    30   7.5  
sp|Q9Z2P5|RIPK3_RAT Receptor-interacting serine/threonine-protei...    30   7.5  
sp|Q5BE22|PRP46_EMENI Pre-mRNA-splicing factor prp46 OS=Emericel...    30   7.5  
sp|Q2GZN9|NST1_CHAGB Stress response protein NST1 OS=Chaetomium ...    30   7.5  
sp|Q9NKV0|MLF_DROME Myeloid leukemia factor OS=Drosophila melano...    30   7.5  
sp|P97399|DSPP_MOUSE Dentin sialophosphoprotein OS=Mus musculus ...    29   9.8  

>sp|Q9J6K8|POLS_RUBVD Structural polyprotein OS=Rubella virus
           (strain Cendehill) PE=3 SV=1
          Length = 1063

 Score = 32.3 bits (72), Expect = 1.2
 Identities = 22/80 (27%), Positives = 32/80 (40%), Gaps = 3/80 (3%)
 Frame = +1

Query: 115 RIRTAETLKEKAAMVGASPKSRHEHNGNEENLAHSTAANRLGKKHSG---LPANTPRRSL 285
           R R + T  + +      P+ R  + G  +    S A     ++  G    PA  P R+ 
Sbjct: 41  RQRDSSTSGDDSGRDSGGPRRRRGNRGRGQRKDWSRAPPPPEERQEGRSQTPAPKPSRAP 100

Query: 286 KQQPSSPRLAKGNPGKVLRP 345
            QQP  PR+  G  G   RP
Sbjct: 101 PQQPQPPRMQTGRGGSAPRP 120


>sp|P19725|POLS_RUBVR Structural polyprotein OS=Rubella virus
           (strain RA27/3 vaccine) PE=3 SV=2
          Length = 1063

 Score = 32.0 bits (71), Expect = 1.5
 Identities = 22/80 (27%), Positives = 31/80 (38%), Gaps = 3/80 (3%)
 Frame = +1

Query: 115 RIRTAETLKEKAAMVGASPKSRHEHNGNEENLAHSTAA---NRLGKKHSGLPANTPRRSL 285
           R R + T  + +      P+ R  + G  +    S A        +  S  PA  P R+ 
Sbjct: 41  RQRDSSTTGDDSGRDSGGPRRRRGNRGRGQRRDWSRAPPPPEERQETRSQTPAPKPSRAP 100

Query: 286 KQQPSSPRLAKGNPGKVLRP 345
            QQP  PR+  G  G   RP
Sbjct: 101 PQQPQPPRMQTGRGGSAPRP 120


>sp|Q8VA10|POLS_RUBVN Structural polyprotein OS=Rubella virus
           (strain RN-UK86) PE=3 SV=1
          Length = 1063

 Score = 32.0 bits (71), Expect = 1.5
 Identities = 22/80 (27%), Positives = 31/80 (38%), Gaps = 3/80 (3%)
 Frame = +1

Query: 115 RIRTAETLKEKAAMVGASPKSRHEHNGNEENLAHSTAA---NRLGKKHSGLPANTPRRSL 285
           R R + T  + +      P+ R  + G  +    S A        +  S  PA  P R+ 
Sbjct: 41  RQRDSSTSGDDSGRDSGGPRRRRGNRGRGQRKDWSMAPPPPEERQESRSQTPAPKPSRAP 100

Query: 286 KQQPSSPRLAKGNPGKVLRP 345
            QQP  PR+  G  G   RP
Sbjct: 101 PQQPQPPRMQTGRGGSAPRP 120


>sp|P08563|POLS_RUBVM Structural polyprotein OS=Rubella virus
           (strain M33) PE=1 SV=2
          Length = 1063

 Score = 32.0 bits (71), Expect = 1.5
 Identities = 22/80 (27%), Positives = 31/80 (38%), Gaps = 3/80 (3%)
 Frame = +1

Query: 115 RIRTAETLKEKAAMVGASPKSRHEHNGNEENLAHSTAA---NRLGKKHSGLPANTPRRSL 285
           R R + T  + +      P+ R  + G  +    S A        +  S  PA  P R+ 
Sbjct: 41  RQRDSSTSGDDSGRDSGGPRRRRGNRGRGQRKDWSRAPPPPEERQESRSQTPAPKPSRAP 100

Query: 286 KQQPSSPRLAKGNPGKVLRP 345
            QQP  PR+  G  G   RP
Sbjct: 101 PQQPQPPRMQTGRGGSAPRP 120


>sp|P07566|POLS_RUBVT Structural polyprotein OS=Rubella virus
           (strain Therien) PE=1 SV=1
          Length = 1063

 Score = 31.6 bits (70), Expect = 2.0
 Identities = 22/80 (27%), Positives = 31/80 (38%), Gaps = 3/80 (3%)
 Frame = +1

Query: 115 RIRTAETLKEKAAMVGASPKSRHEHNGNEENLAHSTAA---NRLGKKHSGLPANTPRRSL 285
           R R + T  + +      P+ R  + G  +    S A        +  S  PA  P R+ 
Sbjct: 41  RQRDSSTSGDDSGRDSGGPRRRRGNRGRGQRRDWSRAPPPPEERQETRSQTPAPKPSRAP 100

Query: 286 KQQPSSPRLAKGNPGKVLRP 345
            QQP  PR+  G  G   RP
Sbjct: 101 PQQPQPPRMQTGRGGSAPRP 120


>sp|Q86T29|ZN605_HUMAN Zinc finger protein 605 OS=Homo sapiens
           GN=ZNF605 PE=2 SV=1
          Length = 641

 Score = 31.6 bits (70), Expect = 2.0
 Identities = 29/100 (29%), Positives = 39/100 (39%), Gaps = 9/100 (9%)
 Frame = -3

Query: 274 EAYLQANHYASSPTYLLLCCGQGSLHCHCARVCSLETHQPWPPSPLVSLQCESC*ASYPP 95
           E +L ANH   +  YL + CG+   +     V    TH    P      QC  C  ++  
Sbjct: 155 EPWLTANHITHTGVYLCMECGR-FFNKKSQLVIHQRTHTGEKP-----YQCSECGKAFSQ 208

Query: 94  AHLMVCEQAT-----PHYCSPGCYSDKRN----LHQRLMT 2
             L+   Q T     PH CS    +  R     LHQR+ T
Sbjct: 209 KSLLTVHQRTHSGEKPHGCSECQKAFSRKSLLILHQRIHT 248


>sp|P08564|POLS_RUBVV Structural polyprotein OS=Rubella virus
           (strain TO-336) PE=3 SV=3
          Length = 1063

 Score = 30.8 bits (68), Expect = 3.4
 Identities = 22/80 (27%), Positives = 31/80 (38%), Gaps = 3/80 (3%)
 Frame = +1

Query: 115 RIRTAETLKEKAAMVGASPKSRHEHNGNEENLAHSTAA---NRLGKKHSGLPANTPRRSL 285
           R R + T  + +      P+ R  + G  +    S A        +  S  PA  P R+ 
Sbjct: 41  RQRDSSTSGDDSGRDSGGPRRRRGNRGRGQLRDWSRAPPPPEERQESRSQTPAPKPSRAP 100

Query: 286 KQQPSSPRLAKGNPGKVLRP 345
            QQP  PR+  G  G   RP
Sbjct: 101 PQQPQPPRMQTGRGGSAPRP 120


>sp|Q99IE6|POLS_RUBVO Structural polyprotein OS=Rubella virus
           (strain TO-336 vaccine) PE=3 SV=1
          Length = 1063

 Score = 30.8 bits (68), Expect = 3.4
 Identities = 22/80 (27%), Positives = 31/80 (38%), Gaps = 3/80 (3%)
 Frame = +1

Query: 115 RIRTAETLKEKAAMVGASPKSRHEHNGNEENLAHSTAA---NRLGKKHSGLPANTPRRSL 285
           R R + T  + +      P+ R  + G  +    S A        +  S  PA  P R+ 
Sbjct: 41  RQRDSSTSGDDSGRDSGGPRRRRGNRGRGQLRDWSRAPPPPEERQESRSQTPAPKPSRAP 100

Query: 286 KQQPSSPRLAKGNPGKVLRP 345
            QQP  PR+  G  G   RP
Sbjct: 101 PQQPQPPRMQTGRGGSAPRP 120


>sp|Q8CIZ8|VWF_MOUSE von Willebrand factor OS=Mus musculus GN=Vwf
           PE=1 SV=2
          Length = 2813

 Score = 30.8 bits (68), Expect = 3.4
 Identities = 21/71 (29%), Positives = 28/71 (39%)
 Frame = -3

Query: 238 PTYLLLCCGQGSLHCHCARVCSLETHQPWPPSPLVSLQCESC*ASYPPAHLMVCEQATPH 59
           P +  L C QG ++  C   C+L           +SL  E C          VC +    
Sbjct: 645 PGFCALGCPQGQVYLQCGNSCNLTCRS-------LSLPDEEC--------SEVCLEGC-- 687

Query: 58  YCSPGCYSDKR 26
           YC PG Y D+R
Sbjct: 688 YCPPGLYQDER 698


>sp|P04155|TFF1_HUMAN Trefoil factor 1 OS=Homo sapiens GN=TFF1 PE=1
           SV=1
          Length = 84

 Score = 30.8 bits (68), Expect = 3.4
 Identities = 16/34 (47%), Positives = 20/34 (58%), Gaps = 1/34 (2%)
 Frame = -2

Query: 332 FPGLPFANRGLDGCCFRD-LRGVFAGKPLCFFPN 234
           FPG+  +     GCCF D +RGV    P CF+PN
Sbjct: 43  FPGVTPSQCANKGCCFDDTVRGV----PWCFYPN 72
tr_hit_id A9VBH0
Definition tr|A9VBH0|A9VBH0_MONBE Predicted protein OS=Monosiga brevicollis
Align length 68
Score (bit) 35.4
E-value 1.4
Report 
BLASTX 2.2.19 [Nov-02-2008]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= BP918549|Adiantum capillus-veneris mRNA, clone:
YMU001_000114_G11.
         (483 letters)

Database: uniprot_trembl.fasta 
           7,341,751 sequences; 2,391,615,440 total letters

Searching..................................................done



                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

tr|A9VBH0|A9VBH0_MONBE Predicted protein OS=Monosiga brevicollis...    35   1.4  
tr|B2U8B8|B2U8B8_RALPJ Urate catabolism protein OS=Ralstonia pic...    34   3.1  
tr|B6GVZ7|B6GVZ7_PENCH Pc06g00520 protein OS=Penicillium chrysog...    34   4.1  
tr|A7CLP1|A7CLP1_BURPI Polysaccharide deacetylase OS=Ralstonia p...    33   5.4  
tr|A1ZRL8|A1ZRL8_9SPHI Putative uncharacterized protein OS=Micro...    33   5.4  
tr|A3CXG5|A3CXG5_METMJ Restriction endonuclease OS=Methanoculleu...    33   5.4  
tr|B2KTD3|B2KTD3_9CNID Nematocyst outer wall antigen OS=Clytia h...    30   5.4  
tr|Q4FV32|Q4FV32_PSYA2 RNAse E OS=Psychrobacter arcticus (strain...    33   7.0  
tr|A4A9C5|A4A9C5_9GAMM Cell division protein FtsX OS=Congregibac...    33   7.0  
tr|B8BNK0|B8BNK0_ORYSI Putative uncharacterized protein OS=Oryza...    33   9.1  

>tr|A9VBH0|A9VBH0_MONBE Predicted protein OS=Monosiga brevicollis
           GN=29569 PE=4 SV=1
          Length = 897

 Score = 35.4 bits (80), Expect = 1.4
 Identities = 25/68 (36%), Positives = 29/68 (42%), Gaps = 7/68 (10%)
 Frame = -3

Query: 277 CEAYLQANHYASSPTYLLLC--CGQGSLHC-----HCARVCSLETHQPWPPSPLVSLQCE 119
           CEA  Q N  AS       C  C QGS +C      C  +C L    P     + +LQCE
Sbjct: 534 CEATCQPNQMASCNPLTKQCEICSQGSPNCTQTKAECDAICDL----PHAKCNMQTLQCE 589

Query: 118 SC*ASYPP 95
           SC  S  P
Sbjct: 590 SCDISSDP 597


>tr|B2U8B8|B2U8B8_RALPJ Urate catabolism protein OS=Ralstonia
           pickettii (strain 12J) GN=Rpic_2260 PE=4 SV=1
          Length = 320

 Score = 34.3 bits (77), Expect = 3.1
 Identities = 27/95 (28%), Positives = 43/95 (45%), Gaps = 16/95 (16%)
 Frame = -3

Query: 472 EWRFASVQLCITAEHFYMKL*QLYSVLFE--------------TKLHLYII-RPTNTKAS 338
           + RFAS Q   TA+HFY  L   + VL+E                +H  ++ RP   +A 
Sbjct: 220 DMRFASPQGFNTADHFYQYLKDAFDVLYEEGDPNGLAQPKMLSIGMHCRLLGRPARFRAL 279

Query: 337 EPFLG-CPSPTVDWMVAVLEICEAYLQANHYASSP 236
           + FL    S    W+   ++I + ++Q + YA  P
Sbjct: 280 QRFLDYVQSHDKVWICRRIDIAQHWIQNHPYAKQP 314


>tr|B6GVZ7|B6GVZ7_PENCH Pc06g00520 protein OS=Penicillium
           chrysogenum Wisconsin 54-1255 GN=Pc06g00520 PE=4 SV=1
          Length = 733

 Score = 33.9 bits (76), Expect = 4.1
 Identities = 17/48 (35%), Positives = 27/48 (56%)
 Frame = +1

Query: 160 GASPKSRHEHNGNEENLAHSTAANRLGKKHSGLPANTPRRSLKQQPSS 303
           GASP+S H   G+  N ++S++ + + K  S LP+  PR     +P S
Sbjct: 110 GASPRSPHLAAGSVSNSSNSSSRSYVSKDDSALPSRQPRSDQPLRPLS 157


>tr|A7CLP1|A7CLP1_BURPI Polysaccharide deacetylase OS=Ralstonia
           pickettii 12D GN=Rpic12DDRAFT_0674 PE=4 SV=1
          Length = 329

 Score = 33.5 bits (75), Expect = 5.4
 Identities = 27/95 (28%), Positives = 43/95 (45%), Gaps = 16/95 (16%)
 Frame = -3

Query: 472 EWRFASVQLCITAEHFYMKL*QLYSVLFE--------------TKLHLYII-RPTNTKAS 338
           + RFAS Q   TA+HFY  L   + VL+E                +H  ++ RP   +A 
Sbjct: 229 DMRFASPQGFNTADHFYQYLKDAFDVLYEEGDPNGLAQPKMLSIGMHCRLLGRPGRFRAL 288

Query: 337 EPFLG-CPSPTVDWMVAVLEICEAYLQANHYASSP 236
           + FL    S    W+   ++I + ++Q + YA  P
Sbjct: 289 QRFLDYVQSHDKVWICRRIDIAQHWIQNHPYAKQP 323


>tr|A1ZRL8|A1ZRL8_9SPHI Putative uncharacterized protein
           OS=Microscilla marina ATCC 23134 GN=M23134_03574 PE=4
           SV=1
          Length = 189

 Score = 33.5 bits (75), Expect = 5.4
 Identities = 17/56 (30%), Positives = 24/56 (42%)
 Frame = -2

Query: 470 MAICLCSIVYHSRTLLHEAITTIFSTF*DKITLIHNKTY*YQGLRTFPGLPFANRG 303
           +  CL   +YH +    E + T F  F   I L++      +GL  FP  PF   G
Sbjct: 16  LLFCLVYAIYHPQFFTAEGLQTFFQQFEQHILLVYLLLSIVRGLALFPSTPFVIAG 71


>tr|A3CXG5|A3CXG5_METMJ Restriction endonuclease OS=Methanoculleus
           marisnigri (strain ATCC 35101 / DSM 1498 / JR1)
           GN=Memar_2142 PE=4 SV=1
          Length = 547

 Score = 33.5 bits (75), Expect = 5.4
 Identities = 23/94 (24%), Positives = 37/94 (39%), Gaps = 10/94 (10%)
 Frame = -3

Query: 292 AVLEICEAYLQANHYASSPT--------YLLLCCGQGSLHC--HCARVCSLETHQPWPPS 143
           AV E+C     + H +  P         +  +C   G   C  H +++C  E HQP    
Sbjct: 441 AVCEVCGKAYCSEHISQCPVCGRWVCSDHASVCSSCGKTFCKEHASKICR-ECHQPLCSD 499

Query: 142 PLVSLQCESC*ASYPPAHLMVCEQATPHYCSPGC 41
               ++C  C   Y   H ++C++     C P C
Sbjct: 500 --CEVECPICHEPYGANHTLICDKCGAAVC-PSC 530


>tr|B2KTD3|B2KTD3_9CNID Nematocyst outer wall antigen OS=Clytia
           hemisphaerica PE=2 SV=1
          Length = 509

 Score = 30.0 bits (66), Expect(2) = 5.4
 Identities = 18/62 (29%), Positives = 27/62 (43%)
 Frame = -3

Query: 226 LLCCGQGSLHCHCARVCSLETHQPWPPSPLVSLQCESC*ASYPPAHLMVCEQATPHYCSP 47
           ++C G  +  C  +   S  + Q  PP  L + Q +   A  P    M CE + P  C+P
Sbjct: 228 MMCPGDCASSCFPSCSSSCCSQQQSPPKALTNKQGKKLPAPKP----MTCEGSCPDSCAP 283

Query: 46  GC 41
            C
Sbjct: 284 SC 285



 Score = 22.3 bits (46), Expect(2) = 5.4
 Identities = 9/19 (47%), Positives = 11/19 (57%)
 Frame = -1

Query: 267 ICRQTTMLLPQPICCCAVG 211
           I  Q  +L PQP+  CA G
Sbjct: 184 ILHQAAVLSPQPVQQCAAG 202


>tr|Q4FV32|Q4FV32_PSYA2 RNAse E OS=Psychrobacter arcticus (strain
           DSM 17307 / 273-4) GN=Psyc_0256 PE=4 SV=1
          Length = 1405

 Score = 33.1 bits (74), Expect = 7.0
 Identities = 18/65 (27%), Positives = 30/65 (46%)
 Frame = +1

Query: 124 TAETLKEKAAMVGASPKSRHEHNGNEENLAHSTAANRLGKKHSGLPANTPRRSLKQQPSS 303
           TA    + +    A P+S ++ +GNE+N   + +A      +S       R+  K +PS 
Sbjct: 666 TALVNTDNSQNASAPPQSTNQQSGNEQNRQQTRSAENSTDDNSDAEERRRRKPRKSRPSK 725

Query: 304 PRLAK 318
           PR  K
Sbjct: 726 PRQRK 730


>tr|A4A9C5|A4A9C5_9GAMM Cell division protein FtsX OS=Congregibacter
           litoralis KT71 GN=KT71_05140 PE=4 SV=1
          Length = 329

 Score = 33.1 bits (74), Expect = 7.0
 Identities = 18/59 (30%), Positives = 26/59 (44%)
 Frame = -1

Query: 345 RPQNLSWVALRQPWTGWLLF*RSARRICRQTTMLLPQPICCCAVGKVLFIAIVLVSALW 169
           RP+ + W    + W GW      ++        +L QP+  C    V+ IAI L S LW
Sbjct: 18  RPRRIRWA---ERWRGWRR--HHSQSAAESLAKVLQQPLSSCMTWLVIGIAIALPSGLW 71


>tr|B8BNK0|B8BNK0_ORYSI Putative uncharacterized protein OS=Oryza
           sativa subsp. indica GN=OsI_37763 PE=4 SV=1
          Length = 507

 Score = 32.7 bits (73), Expect = 9.1
 Identities = 25/75 (33%), Positives = 35/75 (46%), Gaps = 1/75 (1%)
 Frame = +1

Query: 121 RTAETLKEKAAMVGASPKSRHEHNGNEENLAHSTAANRLGKK-HSGLPANTPRRSLKQQP 297
           R AE + E  AM   SP+ RH  N   E  + S+A+N +  +    L  N  R ++K QP
Sbjct: 233 RLAEKMAEFKAMKHTSPEQRHSLNKPTEEHSCSSASNNIQPRIVEALQLNQKRPAMKIQP 292

Query: 298 SSPRLAKGNPGKVLR 342
              R  + N  K  R
Sbjct: 293 RIARELQLNLNKHAR 307