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AcEST | BlastX Result : Swiss-Prot | BlastX Result : TrEMBL | AcESTcontig | About Libraries
NBDC - LSDB Archive
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AcEST | BlastX Result : Swiss-Prot | BlastX Result : TrEMBL | AcESTcontig | About Libraries
BP918550
Clone id YMU001_000114_G12
Library
Length 499
Definition Adiantum capillus-veneris mRNA. clone: YMU001_000114_G12.
Accession
Tissue type prothallium
Developmental stage -
Contig ID -
Sequence 
CACACGGTGGTGAGAGAGAACGTGTGAATGCAATGCCATAAAATCTGTTCATCTTTCTCT
AAAGGGACGCTTGAGCTGCAAATAAGCCTGAGAAGCCCATTTATGTGAAGGCAAGCCATA
ATGCAGTTATGCCTCTGAATGTTGCAAGGTCTGCAGCGATGCAGTGGAGTTCTGGGGTTC
CACACCGGATGCATTATTTCAGTCACCAGAAAGGAAAGCAACGTGGATACGCATGGACCT
CCTGTGGCTTCAAATGAGACAATGCTTAGCTTAGAGCTTGGAAAAAGAGTTTCTTTCGTT
TTGTTGTCGCTAATGCAGGCTACATCCTTTGGTAAAATAGTAGGCATGGAACAATGAAGT
CTAAGTAGGAAGCCAATCACCTGACATGAGGAACAAACTGGTTCTGGTGCCAACCCACCG
AGACAAAATAGTTCAGACTGGTACAAAGTAAAAGAGAGAAGGACTTCTGGTGGGTGATGA
AATCTATGGGAATGGGTGG
■■Homology search results ■■ -
sp_hit_id Q6NTZ5
Definition sp|Q6NTZ5|XPO6B_XENLA Exportin-6-B OS=Xenopus laevis
Align length 96
Score (bit) 30.8
E-value 3.6
Report 
BLASTX 2.2.19 [Nov-02-2008]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= BP918550|Adiantum capillus-veneris mRNA, clone:
YMU001_000114_G12.
         (499 letters)

Database: uniprot_sprot.fasta 
           412,525 sequences; 148,809,765 total letters

Searching..................................................done



                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

sp|Q6NTZ5|XPO6B_XENLA Exportin-6-B OS=Xenopus laevis GN=xpo6-B P...    31   3.6  
sp|Q89B37|GYRB_BUCBP DNA gyrase subunit B OS=Buchnera aphidicola...    30   4.7  
sp|P42523|LAGC_DICDI Loose aggregate C protein OS=Dictyostelium ...    30   4.8  

>sp|Q6NTZ5|XPO6B_XENLA Exportin-6-B OS=Xenopus laevis GN=xpo6-B PE=2
           SV=1
          Length = 1138

 Score = 30.8 bits (68), Expect = 3.6
 Identities = 28/96 (29%), Positives = 40/96 (41%), Gaps = 3/96 (3%)
 Frame = -3

Query: 290 TLFPSSKLSIVSFEATGGPCVSTLLSFLVTEIMHPVWNPRT---PLHRCRPCNIQRHNCI 120
           ++ PS   +I  F   G    S   + + T     V N  +   PLH   P   +    +
Sbjct: 265 SITPSLLTTIFHFARLGCDARSRHTTSVTTNTTSSVVNGGSSSPPLHSAAPTRDRGRLGV 324

Query: 119 MACLHINGLLRLICSSSVPLEKDEQILWHCIHTFSL 12
           +A   IN    L+C + VPLE  E +L  C  TF L
Sbjct: 325 LAMSCIN---ELMCKNCVPLEFQEYLLRVCQQTFYL 357


>sp|Q89B37|GYRB_BUCBP DNA gyrase subunit B OS=Buchnera aphidicola
           subsp. Baizongia pistaciae GN=gyrB PE=3 SV=1
          Length = 804

 Score = 30.4 bits (67), Expect = 4.7
 Identities = 15/49 (30%), Positives = 26/49 (53%)
 Frame = +3

Query: 81  NKPEKPIYVKASHNAVMPLNVARSAAMQWSSGVPHRMHYFSHQKGKQRG 227
           NK +KPI+ K  + +    NV    AMQW+ G    ++ +++   +Q G
Sbjct: 230 NKNKKPIHSKIFYFSSKKNNVEVEIAMQWNKGFQENIYCYTNNIPQQDG 278


>sp|P42523|LAGC_DICDI Loose aggregate C protein OS=Dictyostelium
           discoideum GN=lagC PE=2 SV=2
          Length = 889

 Score = 30.4 bits (67), Expect = 4.8
 Identities = 15/47 (31%), Positives = 25/47 (53%)
 Frame = -1

Query: 499 PPIPIDFITHQKSFSLLLCTSLNYFVSVGWHQNQFVPHVR*LASYLD 359
           PP PID I   KSF+L+  ++L Y   +  ++N+  P      +Y +
Sbjct: 22  PPTPIDAIYDDKSFTLIFNSNLPYSTRLILYKNEKEPRTEMAPNYFN 68
tr_hit_id Q54U05
Definition tr|Q54U05|Q54U05_DICDI Cell surface receptor IPT/TIG domain-containing protein OS=Dictyostelium discoideum
Align length 46
Score (bit) 34.3
E-value 3.3
Report 
BLASTX 2.2.19 [Nov-02-2008]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= BP918550|Adiantum capillus-veneris mRNA, clone:
YMU001_000114_G12.
         (499 letters)

Database: uniprot_trembl.fasta 
           7,341,751 sequences; 2,391,615,440 total letters

Searching..................................................done



                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

tr|Q54U05|Q54U05_DICDI Cell surface receptor IPT/TIG domain-cont...    34   3.3  
tr|A5V0H7|A5V0H7_ROSS1 Putative uncharacterized protein OS=Rosei...    34   3.4  

>tr|Q54U05|Q54U05_DICDI Cell surface receptor IPT/TIG
           domain-containing protein OS=Dictyostelium discoideum
           GN=DDB_0205561 PE=4 SV=1
          Length = 885

 Score = 34.3 bits (77), Expect = 3.3
 Identities = 17/46 (36%), Positives = 24/46 (52%)
 Frame = -1

Query: 496 PIPIDFITHQKSFSLLLCTSLNYFVSVGWHQNQFVPHVR*LASYLD 359
           P PID I   KSF+ +  ++L YF  +  +QNQ  P      +Y D
Sbjct: 24  PSPIDVIYEDKSFTFIFNSNLPYFTRLILYQNQTTPRNEMAPNYFD 69


>tr|A5V0H7|A5V0H7_ROSS1 Putative uncharacterized protein
           OS=Roseiflexus sp. (strain RS-1) GN=RoseRS_4036 PE=4
           SV=1
          Length = 295

 Score = 34.3 bits (77), Expect = 3.4
 Identities = 16/31 (51%), Positives = 18/31 (58%), Gaps = 3/31 (9%)
 Frame = -3

Query: 233 CVSTLLSFLVTEIMHPV---WNPRTPLHRCR 150
           C S  LS L T I+HP    W  RTP+ RCR
Sbjct: 185 CTSHFLSLLCTSIIHPTFSSWISRTPMSRCR 215