BP918553
Clone id YMU001_000114_H04
Library
Length 442
Definition Adiantum capillus-veneris mRNA. clone: YMU001_000114_H04.
Accession
Tissue type prothallium
Developmental stage -
Contig ID
Sequence
ATGGCCAGATGGTGACGTCACTCTCTCTCAAATTTTGAACTCTGAGCCTGTGCCCACAGA
TAACAGGAATGGAGTCGATTATGGTGTGTATGTAAATGAGAGACCGAAATATTGGCCGAT
GGAGTCTGTCTCGCAAGATATGTCTCTATCATTGGCAACTCATGGTGAGACATCATCAAA
GCCATTGCAAGCCACAGACAAATCACCCTTTCGGACAGAATTGCTTGACGAAGAACTCAA
CTCAAGAATTGAGCAGAGATTAAGCCCATCAAAGCTCAATGATATTTGGAGTAAAGTTGT
AGAGAGATGTCAATCAAACCAACTGAGGCAGTTACTCTATGCAAGTGTGCGCCTGATTTC
AATCTCAATCTCAGAAGTGGATGCTGTTGTACACCTGGAAGTTTGCAACCCTGACGATAA
TGCAAGCTGTGAGCGATCGCAG
■■Homology search results ■■ -
sp_hit_id Q8NB25
Definition sp|Q8NB25|F184A_HUMAN Protein FAM184A OS=Homo sapiens
Align length 78
Score (bit) 31.2
E-value 2.0
Report
BLASTX 2.2.19 [Nov-02-2008]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.

Query= BP918553|Adiantum capillus-veneris mRNA, clone:
YMU001_000114_H04.
(442 letters)

Database: uniprot_sprot.fasta
412,525 sequences; 148,809,765 total letters

Searching..................................................done



Score E
Sequences producing significant alignments: (bits) Value

sp|Q8NB25|F184A_HUMAN Protein FAM184A OS=Homo sapiens GN=FAM184A... 31 2.0
sp|Q54EQ9|Y1586_DICDI Putative uncharacterized protein DDB_G0291... 30 3.4
sp|Q9XZT6|DNK_DROME Deoxynucleoside kinase OS=Drosophila melanog... 29 10.0

>sp|Q8NB25|F184A_HUMAN Protein FAM184A OS=Homo sapiens GN=FAM184A PE=2
SV=3
Length = 1140

Score = 31.2 bits (69), Expect = 2.0
Identities = 17/78 (21%), Positives = 37/78 (47%)
Frame = +2

Query: 185 LQATDKSPFRTELLDEELNSRIEQRLSPSKLNDIWSKVVERCQSNQLRQLLYASVRLISI 364
L+ +S + L +++LN R+E+ L + + K + R N+ +LL + +
Sbjct: 912 LRIRSESNQQIRLHEQDLNKRLEKELDVMTADHLREKNIMRADFNKTNELLKEINAALQV 971

Query: 365 SISEVDAVVHLEVCNPDD 418
S+ E++ + P+D
Sbjct: 972 SLEEMEEKYLMRESKPED 989


>sp|Q54EQ9|Y1586_DICDI Putative uncharacterized protein DDB_G0291608
OS=Dictyostelium discoideum GN=DDB_G0291608 PE=4 SV=1
Length = 919

Score = 30.4 bits (67), Expect = 3.4
Identities = 11/24 (45%), Positives = 17/24 (70%)
Frame = -3

Query: 128 QTPSANISVSHLHTHHNRLHSCYL 57
QTP I +S++H HH ++HS +L
Sbjct: 586 QTPQFYIPISNIHRHHQQIHSPHL 609


>sp|Q9XZT6|DNK_DROME Deoxynucleoside kinase OS=Drosophila
melanogaster GN=dnk PE=1 SV=1
Length = 250

Score = 28.9 bits (63), Expect = 10.0
Identities = 29/105 (27%), Positives = 43/105 (40%), Gaps = 3/105 (2%)
Frame = +2

Query: 35 LNSEPVPT-DNRNGVDYGVYVNERPKYWPMESVSQDMSLSLATHGETSSKPLQATDKSPF 211
L +EPV N NGV+ + + PK W M S L +H ++K L+ ++S F
Sbjct: 49 LLTEPVEKWRNVNGVNLLELMYKDPKKWAMPFQSYVTLTMLQSHTAPTNKKLKIMERSIF 108

Query: 212 RTELLDEELNSRIEQRLSPSKLNDI--WSKVVERCQSNQLRQLLY 340
E N R L N + W K +E Q ++Y
Sbjct: 109 SARYCFVE-NMRRNGSLEQGMYNTLEEWYKFIEESIHVQADLIIY 152


tr_hit_id A9SKU4
Definition tr|A9SKU4|A9SKU4_PHYPA Predicted protein OS=Physcomitrella patens subsp. patens
Align length 149
Score (bit) 52.8
E-value 9.0e-06
Report
BLASTX 2.2.19 [Nov-02-2008]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.

Query= BP918553|Adiantum capillus-veneris mRNA, clone:
YMU001_000114_H04.
(442 letters)

Database: uniprot_trembl.fasta
7,341,751 sequences; 2,391,615,440 total letters

Searching..................................................done



Score E
Sequences producing significant alignments: (bits) Value

tr|A9SKU4|A9SKU4_PHYPA Predicted protein OS=Physcomitrella paten... 53 9e-06
tr|A5B4C5|A5B4C5_VITVI Putative uncharacterized protein OS=Vitis... 53 9e-06
tr|O64728|O64728_ARATH Similar to prokaryotic DNA polymerase III... 50 4e-05
tr|A7QCE6|A7QCE6_VITVI Chromosome undetermined scaffold_77, whol... 50 4e-05
tr|Q9M9R7|Q9M9R7_ARATH F14L17.24 protein OS=Arabidopsis thaliana... 48 2e-04
tr|Q6YPF5|Q6YPF5_ORYSJ Os08g0120200 protein OS=Oryza sativa subs... 40 0.057
tr|B8BAD4|B8BAD4_ORYSI Putative uncharacterized protein OS=Oryza... 40 0.057
tr|A9U4M5|A9U4M5_PHYPA Predicted protein OS=Physcomitrella paten... 40 0.057
tr|A3BP49|A3BP49_ORYSJ Putative uncharacterized protein OS=Oryza... 40 0.057
tr|A7PCL7|A7PCL7_VITVI Chromosome chr17 scaffold_12, whole genom... 38 0.28
tr|A5ANL7|A5ANL7_VITVI Putative uncharacterized protein OS=Vitis... 38 0.28
tr|Q9SN33|Q9SN33_ARATH Putative uncharacterized protein F28A21.2... 37 0.37
tr|A9REP7|A9REP7_PHYPA Predicted protein (Fragment) OS=Physcomit... 36 1.1
tr|Q2QTM2|Q2QTM2_ORYSJ Expressed protein OS=Oryza sativa subsp. ... 35 1.8
tr|A3CGJ3|A3CGJ3_ORYSJ Putative uncharacterized protein OS=Oryza... 35 1.8
tr|A2ZJN8|A2ZJN8_ORYSI Putative uncharacterized protein OS=Oryza... 35 1.8
tr|Q24GK4|Q24GK4_TETTH CAF1 family ribonuclease containing prote... 34 3.1
tr|Q3KKB3|Q3KKB3_PSEPF AmpD OS=Pseudomonas fluorescens (strain P... 34 4.1
tr|B4M8Y8|B4M8Y8_DROVI GJ18215 OS=Drosophila virilis GN=GJ18215 ... 34 4.1
tr|A7QDG1|A7QDG1_VITVI Chromosome chr10 scaffold_81, whole genom... 33 5.4
tr|B4J3A8|B4J3A8_DROGR GH14805 OS=Drosophila grimshawi GN=GH1480... 33 5.4
tr|B6GZB0|B6GZB0_PENCH Pc12g12940 protein OS=Penicillium chrysog... 33 5.4
tr|A8H9Z6|A8H9Z6_SHEPA Putative uncharacterized protein OS=Shewa... 33 7.0
tr|Q1WGA8|Q1WGA8_ORYSI Putative NBS-LRR disease resistance prote... 33 7.0
tr|Q4D8V3|Q4D8V3_TRYCR Putative uncharacterized protein (Fragmen... 33 7.0
tr|Q17KK2|Q17KK2_AEDAE Putative uncharacterized protein OS=Aedes... 33 7.0
tr|Q5XV23|Q5XV23_ARATH Putative uncharacterized protein OS=Arabi... 33 9.2
tr|B3M053|B3M053_DROAN GF17761 OS=Drosophila ananassae GN=GF1776... 33 9.2
tr|B3W802|B3W802_LACCB Putative uncharacterized protein OS=Lacto... 33 9.2

>tr|A9SKU4|A9SKU4_PHYPA Predicted protein OS=Physcomitrella patens
subsp. patens GN=PHYPADRAFT_229978 PE=4 SV=1
Length = 1473

Score = 52.8 bits (125), Expect = 9e-06
Identities = 44/149 (29%), Positives = 68/149 (45%), Gaps = 16/149 (10%)
Frame = +2

Query: 38 NSEPVPTDNRNGVDYGVY---------VNERPKYWPMESVSQDMSLSLATHGETSSKPLQ 190
+S+ VP D + + V+ V+ P P + + S H T S Q
Sbjct: 1088 HSQQVPNDVSSALSQPVHGHRDKDKAPVSASPTGKPKGPPTGNQLQSKVHHAATESAMDQ 1147

Query: 191 ATDKSPFRTELL-----DEELNSRIEQRLSPSKLNDIWSKVVERCQSNQLRQLLYASVRL 355
A D S L + + SR + L+ + DIW KV++ C+SN LRQLL + L
Sbjct: 1148 ADDTSLRSASSLVLFDPSQAVGSRDFRMLTRRDMEDIWGKVLDGCRSNVLRQLLSSQGTL 1207

Query: 356 ISISIS--EVDAVVHLEVCNPDDNASCER 436
+++S++ E AV H+E +P A ER
Sbjct: 1208 MALSVARDETFAVAHVEFRSPGHKARAER 1236


>tr|A5B4C5|A5B4C5_VITVI Putative uncharacterized protein OS=Vitis
vinifera GN=VITISV_013864 PE=4 SV=1
Length = 545

Score = 52.8 bits (125), Expect = 9e-06
Identities = 35/113 (30%), Positives = 56/113 (49%), Gaps = 2/113 (1%)
Frame = +2

Query: 104 PKYWPMESVSQDMSLSLATHGETSSKPL--QATDKSPFRTELLDEELNSRIEQRLSPSKL 277
PK S Q LSL ++KP+ Q + + D + + + + ++ KL
Sbjct: 91 PKSAEKNSTHQGDLLSLVDGFNFNAKPVHSQFRNSGASASSHDDVMMGNLVFRSINADKL 150

Query: 278 NDIWSKVVERCQSNQLRQLLYASVRLISISISEVDAVVHLEVCNPDDNASCER 436
+DIW + +ERC S LRQLL+A +L+SIS +E V ++ + D ER
Sbjct: 151 DDIWERCIERCHSKTLRQLLHAHGKLVSISEAEGGLVAYVAFQDEDIKCRAER 203


>tr|O64728|O64728_ARATH Similar to prokaryotic DNA polymerase III
gamma subunit (STICHEL) OS=Arabidopsis thaliana GN=STI
PE=1 SV=2
Length = 1218

Score = 50.4 bits (119), Expect = 4e-05
Identities = 28/58 (48%), Positives = 32/58 (55%)
Frame = +2

Query: 263 SPSKLNDIWSKVVERCQSNQLRQLLYASVRLISISISEVDAVVHLEVCNPDDNASCER 436
S KLNDIW K +ERC S LRQLLY +LISIS E V ++ D ER
Sbjct: 908 SSEKLNDIWRKCIERCHSKTLRQLLYTHGKLISISEVEGILVAYIAFGENDIKLRAER 965


>tr|A7QCE6|A7QCE6_VITVI Chromosome undetermined scaffold_77, whole
genome shotgun sequence OS=Vitis vinifera
GN=GSVIVT00035364001 PE=4 SV=1
Length = 1054

Score = 50.4 bits (119), Expect = 4e-05
Identities = 25/70 (35%), Positives = 41/70 (58%)
Frame = +2

Query: 227 DEELNSRIEQRLSPSKLNDIWSKVVERCQSNQLRQLLYASVRLISISISEVDAVVHLEVC 406
D + + + + ++ KL+DIW + +ERC S LRQLL+A +L+SIS +E V ++
Sbjct: 746 DVMMGNLVFRSINADKLDDIWERCIERCHSKTLRQLLHAHGKLVSISEAEGGLVAYVAFQ 805

Query: 407 NPDDNASCER 436
+ D ER
Sbjct: 806 DEDIKCRAER 815


>tr|Q9M9R7|Q9M9R7_ARATH F14L17.24 protein OS=Arabidopsis thaliana
GN=F14L17.24 PE=1 SV=1
Length = 1071

Score = 48.1 bits (113), Expect = 2e-04
Identities = 26/55 (47%), Positives = 33/55 (60%)
Frame = +2

Query: 272 KLNDIWSKVVERCQSNQLRQLLYASVRLISISISEVDAVVHLEVCNPDDNASCER 436
KLNDIW K V+RC S L+QLLYA +L+SIS E V ++ + A ER
Sbjct: 876 KLNDIWIKCVDRCHSKTLKQLLYAHGKLLSISEVEGILVAYIAFGEGEIKARAER 930


>tr|Q6YPF5|Q6YPF5_ORYSJ Os08g0120200 protein OS=Oryza sativa subsp.
japonica GN=B1203H11.6 PE=4 SV=1
Length = 799

Score = 40.0 bits (92), Expect = 0.057
Identities = 20/56 (35%), Positives = 29/56 (51%)
Frame = +2

Query: 266 PSKLNDIWSKVVERCQSNQLRQLLYASVRLISISISEVDAVVHLEVCNPDDNASCE 433
P L IW K +E C S L LL +L S+ ++ AV L+ C+P+D + E
Sbjct: 552 PDVLETIWIKALENCTSKPLHSLLRKDGKLSSLYTTQGVAVAELQFCHPEDVPTTE 607


>tr|B8BAD4|B8BAD4_ORYSI Putative uncharacterized protein OS=Oryza
sativa subsp. indica GN=OsI_27632 PE=4 SV=1
Length = 811

Score = 40.0 bits (92), Expect = 0.057
Identities = 20/56 (35%), Positives = 29/56 (51%)
Frame = +2

Query: 266 PSKLNDIWSKVVERCQSNQLRQLLYASVRLISISISEVDAVVHLEVCNPDDNASCE 433
P L IW K +E C S L LL +L S+ ++ AV L+ C+P+D + E
Sbjct: 564 PDVLETIWIKALENCTSKPLHSLLRKDGKLSSLYTTQGVAVAELQFCHPEDVPTTE 619


>tr|A9U4M5|A9U4M5_PHYPA Predicted protein OS=Physcomitrella patens
subsp. patens GN=PHYPADRAFT_173641 PE=4 SV=1
Length = 523

Score = 40.0 bits (92), Expect = 0.057
Identities = 27/91 (29%), Positives = 45/91 (49%), Gaps = 2/91 (2%)
Frame = +2

Query: 173 SSKPLQATDKSPFRTELLDEELNSRIEQRLSPSKLNDIWSKVVERCQSNQLRQLLYASVR 352
+SKPL+ ++ ++ EE+ +R+ W++V+ S LRQLL+ R
Sbjct: 68 TSKPLRHEPETTLDFQVFGEEILARL------------WNRVLSEITSRSLRQLLHTDAR 115

Query: 353 LIS--ISISEVDAVVHLEVCNPDDNASCERS 439
L++ +I A+V LE +P D ERS
Sbjct: 116 LVAAGAAIDGSRAIVALEFDHPRDKHKAERS 146


>tr|A3BP49|A3BP49_ORYSJ Putative uncharacterized protein OS=Oryza
sativa subsp. japonica GN=OsJ_024821 PE=4 SV=1
Length = 795

Score = 40.0 bits (92), Expect = 0.057
Identities = 20/56 (35%), Positives = 29/56 (51%)
Frame = +2

Query: 266 PSKLNDIWSKVVERCQSNQLRQLLYASVRLISISISEVDAVVHLEVCNPDDNASCE 433
P L IW K +E C S L LL +L S+ ++ AV L+ C+P+D + E
Sbjct: 548 PDVLETIWIKALENCTSKPLHSLLRKDGKLSSLYTTQGVAVAELQFCHPEDVPTTE 603


>tr|A7PCL7|A7PCL7_VITVI Chromosome chr17 scaffold_12, whole genome
shotgun sequence OS=Vitis vinifera GN=GSVIVT00015918001
PE=4 SV=1
Length = 931

Score = 37.7 bits (86), Expect = 0.28
Identities = 19/56 (33%), Positives = 31/56 (55%)
Frame = +2

Query: 272 KLNDIWSKVVERCQSNQLRQLLYASVRLISISISEVDAVVHLEVCNPDDNASCERS 439
+L +W + E CQS+ L+ L +L S+ +S+ AV LE +PD + E+S
Sbjct: 651 QLEFLWKQATEICQSSSLKNFLRKQGKLSSVIVSQGMAVAELEFQHPDYVSKAEKS 706