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AcEST | BlastX Result : Swiss-Prot | BlastX Result : TrEMBL | AcESTcontig | About Libraries
NBDC - LSDB Archive
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AcEST | BlastX Result : Swiss-Prot | BlastX Result : TrEMBL | AcESTcontig | About Libraries
BP918557
Clone id YMU001_000114_H08
Library
Length 499
Definition Adiantum capillus-veneris mRNA. clone: YMU001_000114_H08.
Accession
Tissue type prothallium
Developmental stage -
Contig ID
Sequence 
GTGAGACCTGGGCCTGTCCTCCGTCAAAGAATTGCTGATGTAATGAACGGGAAGGGGGAG
GGGCAAGATCCCCCGGAGGAAGATGAAGAAAGCTCTCATTTGGGGAGGCACACGTCTGCG
AGCAAGCGAAAGGTTCTTAGTGGCATGTATGAAACAAATACTGCTGGAGTTGGAGTGCAA
CAGCTGGAATGGATCCATCGTGAAACTGGAGGAGATAGGATATTCATAAGGAGTCCTGAA
ATTAAATGGAAGCCCGCAAGTTGGCTTCTGTTTAATGTGTGGCTACCTTGTCACACATAC
ACATATATATATTGTAGTCCTAATAGCTTGTTTCTTTTGAGTTTGGCCTTTCTTCTGCAT
AGGAGTCGAATCATATCCTTCAGTTTTGGCACATCGTGACCTTCGTGATGCTCTGAAAGC
ATTGCTCATGTCATGGTGTTTCTATTTCTACCCTGTACCTACTGTAAGTTGAGCGTGAAG
GCGTCTCCCGGACTGTAAT
■■Homology search results ■■ -
sp_hit_id Q54H45
Definition sp|Q54H45|DRKB_DICDI Probable serine/threonine-protein kinase drkB OS=Dictyostelium discoideum
Align length 48
Score (bit) 30.4
E-value 4.7
Report 
BLASTX 2.2.19 [Nov-02-2008]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= BP918557|Adiantum capillus-veneris mRNA, clone:
YMU001_000114_H08.
         (499 letters)

Database: uniprot_sprot.fasta 
           412,525 sequences; 148,809,765 total letters

Searching..................................................done



                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

sp|Q54H45|DRKB_DICDI Probable serine/threonine-protein kinase dr...    30   4.7  
sp|O35973|PER1_MOUSE Period circadian protein homolog 1 OS=Mus m...    30   4.8  
sp|A1BF35|NUOD_CHLPD NADH-quinone oxidoreductase subunit D OS=Ch...    30   6.3  
sp|Q54H46|DRKA_DICDI Probable serine/threonine-protein kinase dr...    30   8.0  
sp|Q8BIW9|CTF18_MOUSE Chromosome transmission fidelity protein 1...    30   8.2  

>sp|Q54H45|DRKB_DICDI Probable serine/threonine-protein kinase drkB
           OS=Dictyostelium discoideum GN=drkB PE=3 SV=1
          Length = 690

 Score = 30.4 bits (67), Expect = 4.7
 Identities = 14/48 (29%), Positives = 24/48 (50%)
 Frame = -3

Query: 284 SHTLNRSQLAGFHLISGLLMNILSPPVSRWIHSSCCTPTPAVFVSYMP 141
           +H +N + L  FH    L+ N+  P V +++ S   +P   +   YMP
Sbjct: 422 AHNINENILKEFHREINLMKNLRHPNVIQFLGSCLISPDICICTEYMP 469


>sp|O35973|PER1_MOUSE Period circadian protein homolog 1 OS=Mus
            musculus GN=Per1 PE=1 SV=1
          Length = 1291

 Score = 30.4 bits (67), Expect = 4.8
 Identities = 20/52 (38%), Positives = 22/52 (42%), Gaps = 1/52 (1%)
 Frame = -1

Query: 187  PAVALQLQQYLFHTCH*EPFACSQT-CASPNESFLHLPPGDLAPPPSRSLHQ 35
            P VAL L  YLF T    P+  SQ     P     H P   L PPP    H+
Sbjct: 916  PMVALVLPNYLFPTPPSYPYGVSQAPVEGPPTPASHSPSPSLPPPPLSPPHR 967


>sp|A1BF35|NUOD_CHLPD NADH-quinone oxidoreductase subunit D
           OS=Chlorobium phaeobacteroides (strain DSM 266) GN=nuoD
           PE=3 SV=1
          Length = 400

 Score = 30.0 bits (66), Expect = 6.3
 Identities = 22/71 (30%), Positives = 29/71 (40%)
 Frame = +2

Query: 230 GVLKLNGSPQVGFCLMCGYLVTHTHIYIVVLIACFF*VWPFFCIGVESYPSVLAHRDLRD 409
           GVLKL        C   G +VTH   Y+  L  CF       C  V  YP ++ + D  D
Sbjct: 46  GVLKLE-------CFTDGEVVTHAEPYLGYLHRCF----EKHC-EVVDYPGIVPYTDRMD 93

Query: 410 ALKALLMSWCF 442
            L  +   W +
Sbjct: 94  YLAGMNSEWAY 104


>sp|Q54H46|DRKA_DICDI Probable serine/threonine-protein kinase drkA
           OS=Dictyostelium discoideum GN=drkA PE=3 SV=1
          Length = 642

 Score = 29.6 bits (65), Expect = 8.0
 Identities = 14/48 (29%), Positives = 23/48 (47%)
 Frame = -3

Query: 284 SHTLNRSQLAGFHLISGLLMNILSPPVSRWIHSSCCTPTPAVFVSYMP 141
           +H +N + L  FH    L+ N+  P V +++ S    P   +   YMP
Sbjct: 405 AHNINENILKEFHREINLMKNLRHPNVIQFLGSCLIPPDICICTEYMP 452


>sp|Q8BIW9|CTF18_MOUSE Chromosome transmission fidelity protein 18
           homolog OS=Mus musculus GN=Chtf18 PE=2 SV=2
          Length = 969

 Score = 29.6 bits (65), Expect = 8.2
 Identities = 10/26 (38%), Positives = 15/26 (57%)
 Frame = -1

Query: 79  PPGDLAPPPSRSLHQQFFDGGQAQVS 2
           PPGD+ PPPS  +  +  D G +  +
Sbjct: 120 PPGDITPPPSPEVFPEMLDAGYSDAN 145
tr_hit_id A9NNU4
Definition tr|A9NNU4|A9NNU4_PICSI Putative uncharacterized protein OS=Picea sitchensis
Align length 91
Score (bit) 52.4
E-value 1.0e-05
Report 
BLASTX 2.2.19 [Nov-02-2008]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= BP918557|Adiantum capillus-veneris mRNA, clone:
YMU001_000114_H08.
         (499 letters)

Database: uniprot_trembl.fasta 
           7,341,751 sequences; 2,391,615,440 total letters

Searching..................................................done



                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

tr|A9NNU4|A9NNU4_PICSI Putative uncharacterized protein OS=Picea...    52   1e-05
tr|B6T6G7|B6T6G7_MAIZE Putative uncharacterized protein OS=Zea m...    44   0.006
tr|A9TKW7|A9TKW7_PHYPA Predicted protein OS=Physcomitrella paten...    39   0.10 
tr|Q53K52|Q53K52_ORYSJ cDNA clone:J013099D01, full insert sequen...    38   0.30 
tr|B8B4D8|B8B4D8_ORYSI Putative uncharacterized protein OS=Oryza...    38   0.30 
tr|Q8LCQ2|Q8LCQ2_ARATH Putative uncharacterized protein OS=Arabi...    37   0.52 
tr|Q55CT7|Q55CT7_DICDI Putative uncharacterized protein OS=Dicty...    36   1.1  
tr|Q1H5E9|Q1H5E9_ARATH At5g48470 OS=Arabidopsis thaliana PE=2 SV=1     35   1.5  
tr|A7QYY4|A7QYY4_VITVI Chromosome undetermined scaffold_259, who...    35   2.0  
tr|P91263|P91263_CAEEL Putative uncharacterized protein OS=Caeno...    35   2.6  
tr|Q2CBR2|Q2CBR2_9RHOB ParB-like nuclease OS=Oceanicola granulos...    33   5.7  
tr|Q2GX02|Q2GX02_CHAGB Putative uncharacterized protein OS=Chaet...    33   7.4  

>tr|A9NNU4|A9NNU4_PICSI Putative uncharacterized protein OS=Picea
           sitchensis PE=2 SV=1
          Length = 413

 Score = 52.4 bits (124), Expect = 1e-05
 Identities = 32/91 (35%), Positives = 42/91 (46%), Gaps = 22/91 (24%)
 Frame = +1

Query: 1   VRPGPVLRQRIADVMNGKXXXXXXXXXXXXXXH---LGRHTS------------------ 117
           ++PGP++R++I +VM GK                    RH S                  
Sbjct: 313 LKPGPIVREKILNVMRGKDEGADIVSEDEAASRSEKTSRHKSNQGIQTTGKGRPVRPGMF 372

Query: 118 -ASKRKVLSGMYETNTAGVGVQQLEWIHRET 207
             +  KVL GMYETN AGV VQ LEW+H+ET
Sbjct: 373 LETVTKVLGGMYETNVAGVTVQHLEWVHQET 403


>tr|B6T6G7|B6T6G7_MAIZE Putative uncharacterized protein OS=Zea mays
           PE=2 SV=1
          Length = 375

 Score = 43.5 bits (101), Expect = 0.006
 Identities = 27/92 (29%), Positives = 40/92 (43%), Gaps = 23/92 (25%)
 Frame = +1

Query: 1   VRPGPVLRQRIADVMNGKXXXXXXXXXXXXXXH---------LGRHTSASKR-------- 129
           ++PG  L + I DVMNG+              H         LGR + +  +        
Sbjct: 275 LKPGKALERMIKDVMNGRGEGADNVEQPSADSHSEQESLTGVLGRGSVSGHKPRPVRPGM 334

Query: 130 ------KVLSGMYETNTAGVGVQQLEWIHRET 207
                 KVL G+Y +NT+G+  Q LEW+H+ T
Sbjct: 335 FLETVYKVLGGVYASNTSGITAQHLEWVHQTT 366


>tr|A9TKW7|A9TKW7_PHYPA Predicted protein OS=Physcomitrella patens
           subsp. patens GN=PHYPADRAFT_170645 PE=4 SV=1
          Length = 431

 Score = 39.3 bits (90), Expect = 0.10
 Identities = 19/26 (73%), Positives = 21/26 (80%), Gaps = 1/26 (3%)
 Frame = +1

Query: 130 KVLSGMYETNTA-GVGVQQLEWIHRE 204
           KVL GMY TNTA GV VQQ+EWI +E
Sbjct: 372 KVLQGMYSTNTARGVTVQQMEWIRKE 397


>tr|Q53K52|Q53K52_ORYSJ cDNA clone:J013099D01, full insert sequence
           OS=Oryza sativa subsp. japonica GN=LOC_Os11g23790 PE=2
           SV=1
          Length = 382

 Score = 37.7 bits (86), Expect = 0.30
 Identities = 14/26 (53%), Positives = 19/26 (73%)
 Frame = +1

Query: 130 KVLSGMYETNTAGVGVQQLEWIHRET 207
           KVL G+Y  NT+G+  Q LEW+H+ T
Sbjct: 348 KVLGGIYANNTSGITAQHLEWVHQTT 373


>tr|B8B4D8|B8B4D8_ORYSI Putative uncharacterized protein OS=Oryza
           sativa subsp. indica GN=OsI_23641 PE=4 SV=1
          Length = 381

 Score = 37.7 bits (86), Expect = 0.30
 Identities = 14/26 (53%), Positives = 19/26 (73%)
 Frame = +1

Query: 130 KVLSGMYETNTAGVGVQQLEWIHRET 207
           KVL G+Y  NT+G+  Q LEW+H+ T
Sbjct: 347 KVLGGIYANNTSGITAQHLEWVHQTT 372


>tr|Q8LCQ2|Q8LCQ2_ARATH Putative uncharacterized protein
           OS=Arabidopsis thaliana PE=2 SV=1
          Length = 397

 Score = 37.0 bits (84), Expect = 0.52
 Identities = 24/91 (26%), Positives = 35/91 (38%), Gaps = 22/91 (24%)
 Frame = +1

Query: 1   VRPGPVLRQRIADVMNGKXXXXXXXXXXXXXXHLGRHTSASK------------------ 126
           ++PG  ++Q I +VM GK                GR  S  K                  
Sbjct: 298 LKPGKTVQQMIQNVMQGKDEGADNLSKESDSSTEGRKPSGLKGRGSVTGRKPLPVRPGMF 357

Query: 127 ----RKVLSGMYETNTAGVGVQQLEWIHRET 207
                KVL  +Y  N +G+  Q LEW+H++T
Sbjct: 358 LETVTKVLGSIYSGNASGITAQHLEWVHQKT 388


>tr|Q55CT7|Q55CT7_DICDI Putative uncharacterized protein
           OS=Dictyostelium discoideum GN=DDB_0190661 PE=4 SV=1
          Length = 373

 Score = 35.8 bits (81), Expect = 1.1
 Identities = 19/52 (36%), Positives = 27/52 (51%), Gaps = 5/52 (9%)
 Frame = +1

Query: 172 GVQQLEWIHRETGGDRIFIRSPEI-----KWKPASWLLFNVWLPCHTYTYIY 312
           G   L+WIH +TG ++I I    I     +W    W +F +W+P  T  YIY
Sbjct: 162 GKNYLKWIHSQTGLNKIIIFDNSILELFTRWP--WWYIFILWIPIITACYIY 211


>tr|Q1H5E9|Q1H5E9_ARATH At5g48470 OS=Arabidopsis thaliana PE=2 SV=1
          Length = 397

 Score = 35.4 bits (80), Expect = 1.5
 Identities = 23/91 (25%), Positives = 35/91 (38%), Gaps = 22/91 (24%)
 Frame = +1

Query: 1   VRPGPVLRQRIADVMNGKXXXXXXXXXXXXXXHLGRHTSA-------------------- 120
           ++PG  ++Q I +VM GK                GR  S                     
Sbjct: 298 LKPGKTVQQMIQNVMQGKDEGADNLSKEDDSSTEGRKPSGLNGRGSVTGRKPLPVRPGMF 357

Query: 121 --SKRKVLSGMYETNTAGVGVQQLEWIHRET 207
             +  KVL  +Y  N +G+  Q LEW+H++T
Sbjct: 358 LETVTKVLGSIYSGNASGITAQHLEWVHQKT 388


>tr|A7QYY4|A7QYY4_VITVI Chromosome undetermined scaffold_259, whole
           genome shotgun sequence OS=Vitis vinifera
           GN=GSVIVT00010395001 PE=4 SV=1
          Length = 350

 Score = 35.0 bits (79), Expect = 2.0
 Identities = 13/26 (50%), Positives = 19/26 (73%)
 Frame = +1

Query: 130 KVLSGMYETNTAGVGVQQLEWIHRET 207
           KVL G+Y  N +G+  Q LEW+H++T
Sbjct: 315 KVLDGIYGGNISGITAQHLEWVHQKT 340


>tr|P91263|P91263_CAEEL Putative uncharacterized protein
           OS=Caenorhabditis elegans GN=F18F11.4 PE=2 SV=4
          Length = 550

 Score = 34.7 bits (78), Expect = 2.6
 Identities = 18/71 (25%), Positives = 35/71 (49%), Gaps = 2/71 (2%)
 Frame = +1

Query: 112 TSASKRKVLSGMYETNTAGVGVQQLEWIHRETGGDRIFIRS--PEIKWKPASWLLFNVWL 285
           TS++K     G+Y      V  +++ +++ E   + + +++  P I WKP  W  FN   
Sbjct: 77  TSSTK---FGGIYVREAYRVSDEEIRFLYLENQDNNVNLKAEVPSIGWKPVEWFCFN--- 130

Query: 286 PCHTYTYIYCS 318
               + Y++CS
Sbjct: 131 -ASCFDYLFCS 140