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AcEST | BlastX Result : Swiss-Prot | BlastX Result : TrEMBL | AcESTcontig | About Libraries
NBDC - LSDB Archive
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AcEST | BlastX Result : Swiss-Prot | BlastX Result : TrEMBL | AcESTcontig | About Libraries
BP918558
Clone id YMU001_000114_H09
Library
Length 406
Definition Adiantum capillus-veneris mRNA. clone: YMU001_000114_H09.
Accession
Tissue type prothallium
Developmental stage -
Contig ID
Sequence 
TAGAAGAAAGAGGAAAACACATTTTGTCAAAACTGTTAAATTCCTTGTAGAGTACAGTTA
CGTTGTTGGCTCACCTATGGATAGAACATCCTCCAGCTTGTGCTACACTTTACCTAGTCA
AACAAAGAGAAGCCCATATCATCATCACTTTCTTCTTCTGCTTTCTTTTCTTCTTCCTTC
TTTTCCTCAACAGCGGGGGCCGCTCCACCACCAGCTGCAGCTGGCACAGCTCCAGCACCA
CCGTCGCCACCAATGAAGCTTCCACCAGCACCAATCTCCAACAATGACCTGGAAAACAGC
AGCAGAGGGCGTTATGTACGAGAAGGAGGAGGAGATGCCACCGGATCCTGCAGAGGAGAA
CGCTAGCTTGGAAAGATGGCGTTGAAGCTCGAATGCGGAATCTGCC
■■Homology search results ■■ -
sp_hit_id Q9SVZ6
Definition sp|Q9SVZ6|RLA31_ARATH 60S acidic ribosomal protein P3-1 OS=Arabidopsis thaliana
Align length 43
Score (bit) 30.4
E-value 2.8
Report 
BLASTX 2.2.19 [Nov-02-2008]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= BP918558|Adiantum capillus-veneris mRNA, clone:
YMU001_000114_H09.
         (406 letters)

Database: uniprot_sprot.fasta 
           412,525 sequences; 148,809,765 total letters

Searching..................................................done



                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

sp|Q9SVZ6|RLA31_ARATH 60S acidic ribosomal protein P3-1 OS=Arabi...    30   2.8  
sp|O24413|RLA3_MAIZE 60S acidic ribosomal protein P3 OS=Zea mays...    30   4.8  
sp|Q9NZV5|SELN_HUMAN Selenoprotein N OS=Homo sapiens GN=SEPN1 PE...    29   8.2  

>sp|Q9SVZ6|RLA31_ARATH 60S acidic ribosomal protein P3-1
           OS=Arabidopsis thaliana GN=RPP3A PE=1 SV=1
          Length = 119

 Score = 30.4 bits (67), Expect = 2.8
 Identities = 17/43 (39%), Positives = 24/43 (55%)
 Frame = -2

Query: 405 ADSAFELQRHLSKLXXXXXXXXXXXXXXSYITPSAAVFQVIVG 277
           A S +ELQR L ++              S ++P++AVFQVIVG
Sbjct: 28  ASSTYELQRKLVQVSLSADSSGGVQSSFSLVSPTSAVFQVIVG 70


>sp|O24413|RLA3_MAIZE 60S acidic ribosomal protein P3 OS=Zea mays
           GN=RPP3A PE=1 SV=3
          Length = 120

 Score = 29.6 bits (65), Expect = 4.8
 Identities = 18/43 (41%), Positives = 22/43 (51%)
 Frame = -2

Query: 405 ADSAFELQRHLSKLXXXXXXXXXXXXXXSYITPSAAVFQVIVG 277
           A + +ELQR L                 S +TPS+AVFQVIVG
Sbjct: 28  AATPYELQRRLVAAASAADSRYGVQSSFSMVTPSSAVFQVIVG 70


>sp|Q9NZV5|SELN_HUMAN Selenoprotein N OS=Homo sapiens GN=SEPN1 PE=1
           SV=4
          Length = 590

 Score = 28.9 bits (63), Expect = 8.2
 Identities = 10/17 (58%), Positives = 15/17 (88%)
 Frame = +2

Query: 323 KEEEMPPDPAEENASLE 373
           +EEE+PPDP+EE  ++E
Sbjct: 143 EEEELPPDPSEETLTIE 159
tr_hit_id A9PE32
Definition tr|A9PE32|A9PE32_POPTR Putative uncharacterized protein OS=Populus trichocarpa
Align length 43
Score (bit) 35.8
E-value 1.1
Report 
BLASTX 2.2.19 [Nov-02-2008]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= BP918558|Adiantum capillus-veneris mRNA, clone:
YMU001_000114_H09.
         (406 letters)

Database: uniprot_trembl.fasta 
           7,341,751 sequences; 2,391,615,440 total letters

Searching..................................................done



                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

tr|A9PE32|A9PE32_POPTR Putative uncharacterized protein OS=Popul...    36   1.1  
tr|A9P8B5|A9P8B5_POPTR Putative uncharacterized protein OS=Popul...    35   1.4  
tr|A9NPS6|A9NPS6_PICSI Putative uncharacterized protein OS=Picea...    33   5.5  

>tr|A9PE32|A9PE32_POPTR Putative uncharacterized protein OS=Populus
           trichocarpa PE=2 SV=1
          Length = 124

 Score = 35.8 bits (81), Expect = 1.1
 Identities = 20/43 (46%), Positives = 24/43 (55%)
 Frame = -2

Query: 405 ADSAFELQRHLSKLXXXXXXXXXXXXXXSYITPSAAVFQVIVG 277
           A S FELQR L +               SY+TPS+AVFQVI+G
Sbjct: 29  ASSTFELQRKLVQSALSADSSGGVQSSFSYVTPSSAVFQVIIG 71


>tr|A9P8B5|A9P8B5_POPTR Putative uncharacterized protein OS=Populus
           trichocarpa PE=2 SV=1
          Length = 124

 Score = 35.4 bits (80), Expect = 1.4
 Identities = 19/43 (44%), Positives = 24/43 (55%)
 Frame = -2

Query: 405 ADSAFELQRHLSKLXXXXXXXXXXXXXXSYITPSAAVFQVIVG 277
           A S FELQR L +               SY+TPS+AVFQV++G
Sbjct: 29  ASSTFELQRKLVQSALSADSSGAVQSSFSYVTPSSAVFQVVIG 71


>tr|A9NPS6|A9NPS6_PICSI Putative uncharacterized protein OS=Picea
           sitchensis PE=2 SV=1
          Length = 121

 Score = 33.5 bits (75), Expect = 5.5
 Identities = 18/43 (41%), Positives = 24/43 (55%)
 Frame = -2

Query: 405 ADSAFELQRHLSKLXXXXXXXXXXXXXXSYITPSAAVFQVIVG 277
           A S F+LQR L  +              SY++PS+AVFQVI+G
Sbjct: 28  AASTFDLQRQLVNVALRSEGSGPVSSSFSYVSPSSAVFQVIIG 70