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AcEST | BlastX Result : Swiss-Prot | BlastX Result : TrEMBL | AcESTcontig | About Libraries
NBDC - LSDB Archive
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AcEST | BlastX Result : Swiss-Prot | BlastX Result : TrEMBL | AcESTcontig | About Libraries
BP918564
Clone id YMU001_000115_A04
Library
Length 499
Definition Adiantum capillus-veneris mRNA. clone: YMU001_000115_A04.
Accession
Tissue type prothallium
Developmental stage -
Contig ID -
Sequence 
CATCCATGAGACCAAAGTAAGTTGGCTCTATTGAGAACCGGGTTTGAACGTACGTTCAAA
AAATGCTATGGCTAGAATCCTATCAACCTGAGACTTTGCAAGTCGTCATTGGTGGTTGCA
AGGTGAATCTTTTTTTTATGATTTTGCAAGAAAGAGACGCTAATGCGCGTCGGGAAAACA
TTGTTGCTGGTAATAACTCGCACGAGGAAAAGATTGGAAAGAAGTGCCGTCGTACACAAG
GAATCTTCGGATTGGAACCATCTGGCTACGTTAAGCGATGACCCGGAAAAAGAACCTTCT
TTAATGTAATTGCAAACTCTGTTTGTGAAAGAAAGACATCAAGCTTAATGCTCTATGACT
TGGGCATTCCCTATGTGGGAGGACATAAGAGGTTTAGTACCCTCTGGACTAACAACGCAG
GATTATGCGCAAGGACAAATACGTAGATTGATTTCTACAAAGATTATTCTTCTCGAATTT
GAGAAGACAGCATCCAGTT
■■Homology search results ■■ -
sp_hit_id Q89AB0
Definition sp|Q89AB0|RIBD_BUCBP Riboflavin biosynthesis protein ribD OS=Buchnera aphidicola subsp. Baizongia pistaciae
Align length 31
Score (bit) 32.7
E-value 0.95
Report 
BLASTX 2.2.19 [Nov-02-2008]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= BP918564|Adiantum capillus-veneris mRNA, clone:
YMU001_000115_A04.
         (499 letters)

Database: uniprot_sprot.fasta 
           412,525 sequences; 148,809,765 total letters

Searching..................................................done



                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

sp|Q89AB0|RIBD_BUCBP Riboflavin biosynthesis protein ribD OS=Buc...    33   0.95 
sp|Q61143|TRPC6_MOUSE Short transient receptor potential channel...    31   3.7  
sp|Q9Y210|TRPC6_HUMAN Short transient receptor potential channel...    31   3.7  

>sp|Q89AB0|RIBD_BUCBP Riboflavin biosynthesis protein ribD
           OS=Buchnera aphidicola subsp. Baizongia pistaciae
           GN=ribD PE=3 SV=1
          Length = 372

 Score = 32.7 bits (73), Expect = 0.95
 Identities = 14/31 (45%), Positives = 20/31 (64%)
 Frame = -3

Query: 212 LFLVRVITSNNVFPTRISVSFLQNHKKKIHL 120
           LFL+R+ + NN++P+ I    L N  KKI L
Sbjct: 253 LFLIRIHSDNNIWPSHIKQIILNNKSKKIDL 283


>sp|Q61143|TRPC6_MOUSE Short transient receptor potential channel 6
           OS=Mus musculus GN=Trpc6 PE=2 SV=2
          Length = 930

 Score = 30.8 bits (68), Expect = 3.7
 Identities = 17/47 (36%), Positives = 24/47 (51%)
 Frame = +1

Query: 148 KKETLMRVGKTLLLVITRTRKRLERSAVVHKESSDWNHLATLSDDPE 288
           KKE L RVG  LLL I++   R+  + + H   ++   LAT     E
Sbjct: 153 KKENLSRVGDALLLAISKGYVRIVEAILNHPSFAEGKRLATSPSQSE 199


>sp|Q9Y210|TRPC6_HUMAN Short transient receptor potential channel 6
           OS=Homo sapiens GN=TRPC6 PE=1 SV=1
          Length = 931

 Score = 30.8 bits (68), Expect = 3.7
 Identities = 17/47 (36%), Positives = 24/47 (51%)
 Frame = +1

Query: 148 KKETLMRVGKTLLLVITRTRKRLERSAVVHKESSDWNHLATLSDDPE 288
           KKE L RVG  LLL I++   R+  + + H   ++   LAT     E
Sbjct: 154 KKENLSRVGDALLLAISKGYVRIVEAILSHPAFAEGKRLATSPSQSE 200
tr_hit_id A7ASN5
Definition tr|A7ASN5|A7ASN5_BABBO Putative uncharacterized protein OS=Babesia bovis
Align length 51
Score (bit) 35.8
E-value 1.2
Report 
BLASTX 2.2.19 [Nov-02-2008]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= BP918564|Adiantum capillus-veneris mRNA, clone:
YMU001_000115_A04.
         (499 letters)

Database: uniprot_trembl.fasta 
           7,341,751 sequences; 2,391,615,440 total letters

Searching..................................................done



                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

tr|A7ASN5|A7ASN5_BABBO Putative uncharacterized protein OS=Babes...    36   1.2  
tr|A2QWN1|A2QWN1_ASPNC Putative uncharacterized protein OS=Asper...    35   2.6  
tr|Q4PA34|Q4PA34_USTMA Putative uncharacterized protein OS=Ustil...    33   9.7  

>tr|A7ASN5|A7ASN5_BABBO Putative uncharacterized protein OS=Babesia
           bovis GN=BBOV_IV012020 PE=4 SV=1
          Length = 858

 Score = 35.8 bits (81), Expect = 1.2
 Identities = 19/51 (37%), Positives = 30/51 (58%)
 Frame = -3

Query: 263 RWFQSEDSLCTTALLSNLFLVRVITSNNVFPTRISVSFLQNHKKKIHLATT 111
           RWF SED +C  A L+ L  V ++T+ N+    +SV+F  +  KK+ +  T
Sbjct: 327 RWFVSEDFICLMACLNILCCVTLMTNENL----MSVAFTMDANKKLSIDNT 373


>tr|A2QWN1|A2QWN1_ASPNC Putative uncharacterized protein
           OS=Aspergillus niger (strain CBS 513.88 / FGSC A1513)
           GN=An11g05780 PE=4 SV=1
          Length = 233

 Score = 34.7 bits (78), Expect = 2.6
 Identities = 18/53 (33%), Positives = 24/53 (45%)
 Frame = +3

Query: 282 PGKRTFFNVIANSVCERKTSSLMLYDLGIPYVGGHKRFSTLWTNNAGLCARTN 440
           P  ++F    A S C+  T +   ++ G P  G H  FS  W NN G    TN
Sbjct: 66  PSSQSFATQAATSACKSDTPNPWAWNGGFPNSGSHNNFS--WNNNTGNNTSTN 116


>tr|Q4PA34|Q4PA34_USTMA Putative uncharacterized protein OS=Ustilago
           maydis GN=UM03029.1 PE=4 SV=1
          Length = 294

 Score = 32.7 bits (73), Expect = 9.7
 Identities = 22/76 (28%), Positives = 39/76 (51%)
 Frame = +1

Query: 205 RKRLERSAVVHKESSDWNHLATLSDDPEKEPSLM*LQTLFVKERHQA*CSMTWAFPMWED 384
           ++ +ER   ++K++SDW ++A   D P+    L  L T    ER +       A   W +
Sbjct: 164 KRNMER---LNKQASDWIYMANNEDSPQGTIDLHGLYTSEALERAEQAVKHAQA-QGWSE 219

Query: 385 IRGLVPSGLTTQDYAQ 432
           +R +V  GL ++D+ Q
Sbjct: 220 LRIIVGKGLHSKDHRQ 235