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NBDC - LSDB Archive
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AcEST | BlastX Result : Swiss-Prot | BlastX Result : TrEMBL | AcESTcontig | About Libraries
BP918565
Clone id YMU001_000115_A05
Library
Length 471
Definition Adiantum capillus-veneris mRNA. clone: YMU001_000115_A05.
Accession
Tissue type prothallium
Developmental stage -
Contig ID -
Sequence 
AGGGCAAGGTAGCAAGCGGTGGGTGATCAGACAAGCAGGGGAAGGGGGGCCAACACCACT
TGTGAGGGAGTAGGCGGCACAACAGTGACCAGCGCTAGGAGAGAAGCTTGCAGGTGCACT
CAGACACTTGCAGGTGCATGGAAGTGAGATTACAGAGATTTGGTTGCATGGAAGAGAAGC
TTGCACGTGCACTTAGATACTTGCAGGTGCGTAGAAGTGAGATTACAGAGCTTTGGTTGC
ATGGAAGAGAAACTTGCATGTGCAAAGCAGTGAGATTATAGAGCCAAGGCTGCATGGGAA
ACCATTACACATTATGCATGTTGAGGCGTCAACATGAGGTAGCATTCCTGCTGCTGCTGA
GATGAATCATTGTGTGCTGTGATGACTGCATCGACTTGATTCCGCATGCTGAGGTGTCAG
AAGCAGAAGAAAGTGCAGCAAACGAATGGTGCAGATGCGCAACCCTCTGAC
■■Homology search results ■■ -
sp_hit_id Q5R544
Definition sp|Q5R544|C1R_PONAB Complement C1r subcomponent OS=Pongo abelii
Align length 32
Score (bit) 30.0
E-value 5.3
Report 
BLASTX 2.2.19 [Nov-02-2008]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= BP918565|Adiantum capillus-veneris mRNA, clone:
YMU001_000115_A05.
         (471 letters)

Database: uniprot_sprot.fasta 
           412,525 sequences; 148,809,765 total letters

Searching..................................................done



                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

sp|Q5R544|C1R_PONAB Complement C1r subcomponent OS=Pongo abelii ...    30   5.3  
sp|P01065|IBB_VICAN Bowman-Birk type proteinase inhibitor OS=Vic...    30   7.1  
sp|Q8W4Y8|IBB_LENCU Bowman-Birk type proteinase inhibitor OS=Len...    30   7.1  
sp|Q5R1W3|C1R_PANTR Complement C1r subcomponent OS=Pan troglodyt...    29   9.1  
sp|P00736|C1R_HUMAN Complement C1r subcomponent OS=Homo sapiens ...    29   9.1  
sp|Q12UF9|NIKR_METBU Putative nickel-responsive regulator OS=Met...    29   9.3  
sp|P37112|AMAA_BACST N-acyl-L-amino acid amidohydrolase OS=Bacil...    29   9.3  

>sp|Q5R544|C1R_PONAB Complement C1r subcomponent OS=Pongo abelii
           GN=C1R PE=2 SV=1
          Length = 705

 Score = 30.0 bits (66), Expect = 5.3
 Identities = 15/32 (46%), Positives = 19/32 (59%), Gaps = 2/32 (6%)
 Frame = +3

Query: 159 FGCMEEKLARALRY--LQVRRSEITELWLHGR 248
           FG MEEK+A  LR+  L V   +  E WL G+
Sbjct: 596 FGVMEEKIAHDLRFVRLPVANPQACETWLRGK 627


>sp|P01065|IBB_VICAN Bowman-Birk type proteinase inhibitor OS=Vicia
           angustifolia PE=1 SV=1
          Length = 72

 Score = 29.6 bits (65), Expect = 7.1
 Identities = 14/44 (31%), Positives = 18/44 (40%)
 Frame = -1

Query: 147 SLPCTCKCLSAPASFSPSAGHCCAAYSLTSGVGPPSPACLITHR 16
           S P TC+C+        +  HC   YS      PP   C  TH+
Sbjct: 17  SQPPTCRCVDVGERCHSACNHCVCNYS-----NPPQCQCFDTHK 55


>sp|Q8W4Y8|IBB_LENCU Bowman-Birk type proteinase inhibitor OS=Lens
           culinaris PE=1 SV=2
          Length = 110

 Score = 29.6 bits (65), Expect = 7.1
 Identities = 15/44 (34%), Positives = 19/44 (43%)
 Frame = -1

Query: 147 SLPCTCKCLSAPASFSPSAGHCCAAYSLTSGVGPPSPACLITHR 16
           S P TC+C+    S   +   C  AYS      PP   C  TH+
Sbjct: 59  SQPPTCRCVDVRESCHSACDKCVCAYS-----NPPQCQCYDTHK 97


>sp|Q5R1W3|C1R_PANTR Complement C1r subcomponent OS=Pan troglodytes
           GN=C1R PE=2 SV=1
          Length = 705

 Score = 29.3 bits (64), Expect = 9.1
 Identities = 15/32 (46%), Positives = 19/32 (59%), Gaps = 2/32 (6%)
 Frame = +3

Query: 159 FGCMEEKLARALRY--LQVRRSEITELWLHGR 248
           FG MEEK+A  LR+  L V   +  E WL G+
Sbjct: 596 FGVMEEKIAHDLRFVRLPVANPQACENWLRGK 627


>sp|P00736|C1R_HUMAN Complement C1r subcomponent OS=Homo sapiens
           GN=C1R PE=1 SV=2
          Length = 705

 Score = 29.3 bits (64), Expect = 9.1
 Identities = 15/32 (46%), Positives = 19/32 (59%), Gaps = 2/32 (6%)
 Frame = +3

Query: 159 FGCMEEKLARALRY--LQVRRSEITELWLHGR 248
           FG MEEK+A  LR+  L V   +  E WL G+
Sbjct: 596 FGVMEEKIAHDLRFVRLPVANPQACENWLRGK 627


>sp|Q12UF9|NIKR_METBU Putative nickel-responsive regulator
           OS=Methanococcoides burtonii (strain DSM 6242)
           GN=Mbur_2041 PE=3 SV=1
          Length = 140

 Score = 29.3 bits (64), Expect = 9.3
 Identities = 13/24 (54%), Positives = 17/24 (70%)
 Frame = +1

Query: 148 DYRDLVAWKRSLHVHLDTCRCVEV 219
           DY DL+  K S+H+HLD   C+EV
Sbjct: 82  DYSDLI--KSSVHIHLDHDNCLEV 103


>sp|P37112|AMAA_BACST N-acyl-L-amino acid amidohydrolase OS=Bacillus
           stearothermophilus GN=amaA PE=1 SV=1
          Length = 370

 Score = 29.3 bits (64), Expect = 9.3
 Identities = 15/37 (40%), Positives = 21/37 (56%), Gaps = 7/37 (18%)
 Frame = +1

Query: 157 DLVAWKRSLHVHLD-------TCRCVEVRLQSFGCME 246
           D++AW+R LH H +       T + V   LQSFG +E
Sbjct: 16  DVIAWRRHLHAHPELSFQEEKTAQFVYETLQSFGHLE 52
tr_hit_id B6KYK0
Definition tr|B6KYK0|B6KYK0_BRAFL Putative uncharacterized protein OS=Branchiostoma floridae
Align length 46
Score (bit) 33.1
E-value 7.1
Report 
BLASTX 2.2.19 [Nov-02-2008]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= BP918565|Adiantum capillus-veneris mRNA, clone:
YMU001_000115_A05.
         (471 letters)

Database: uniprot_trembl.fasta 
           7,341,751 sequences; 2,391,615,440 total letters

Searching..................................................done



                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

tr|B6KYK0|B6KYK0_BRAFL Putative uncharacterized protein OS=Branc...    33   7.1  
tr|Q4SVR6|Q4SVR6_TETNG Chromosome undetermined SCAF13729, whole ...    33   9.3  
tr|O61858|O61858_CAEEL Putative uncharacterized protein OS=Caeno...    33   9.3  
tr|Q22BY0|Q22BY0_TETTH Regulator of chromosome condensation (RCC...    33   9.3  
tr|A8PVM1|A8PVM1_BRUMA Golgi autoantigen, golgin subfamily A mem...    33   9.3  

>tr|B6KYK0|B6KYK0_BRAFL Putative uncharacterized protein
           OS=Branchiostoma floridae GN=BRAFLDRAFT_275108 PE=4 SV=1
          Length = 912

 Score = 33.1 bits (74), Expect = 7.1
 Identities = 17/46 (36%), Positives = 26/46 (56%)
 Frame = -3

Query: 256 QVSLPCNQSSVISLLRTCKYLSARASFSSMQPNLCNLTSMHLQVSE 119
           Q++ PC+    +  L+  K + A  +FS   P LCN  +M LQV+E
Sbjct: 405 QLTPPCDTDGSVLKLKCLKTVKALDAFSLTPPLLCNDEAMKLQVAE 450


>tr|Q4SVR6|Q4SVR6_TETNG Chromosome undetermined SCAF13729, whole
           genome shotgun sequence OS=Tetraodon nigroviridis
           GN=GSTENG00011854001 PE=4 SV=1
          Length = 868

 Score = 32.7 bits (73), Expect = 9.3
 Identities = 20/59 (33%), Positives = 24/59 (40%)
 Frame = -1

Query: 180 ASLPCNQISVISLPCTCKCLSAPASFSPSAGHCCAAYSLTSGVGPPSPACLITHRLLPC 4
           AS P    S+   P      SAPA+  P  G  C   +   G GPP+P    TH    C
Sbjct: 581 ASSPGASQSLRPAPTPPNATSAPAT--PQTGRSCGTGAAPGGAGPPAPGGTPTHSKRTC 637


>tr|O61858|O61858_CAEEL Putative uncharacterized protein
           OS=Caenorhabditis elegans GN=T26C12.3 PE=1 SV=2
          Length = 393

 Score = 32.7 bits (73), Expect = 9.3
 Identities = 30/93 (32%), Positives = 40/93 (43%), Gaps = 5/93 (5%)
 Frame = -1

Query: 360 SAAAGMLPHVDASTCIMCNGFPCSL--GSIISLLCTCKFLFHATKAL*SHFYAP---ASI 196
           S   G+ PH     C+     P SL  G  + L+C  + LF +  AL SH   P     I
Sbjct: 104 SLPVGVCPH-----CLQIFEQPISLQCGHSLCLICCNQLLFSSPPALTSHLNRPIPRMGI 158

Query: 195 *VHVQASLPCNQISVISLPCTCKCLSAPASFSP 97
              V ++LP +   V+     C   SAP S SP
Sbjct: 159 SQRVPSTLPGSNGIVMYRTPRCPVCSAPPSRSP 191


>tr|Q22BY0|Q22BY0_TETTH Regulator of chromosome condensation (RCC1)
            OS=Tetrahymena thermophila SB210 GN=TTHERM_01082880 PE=4
            SV=1
          Length = 1984

 Score = 32.7 bits (73), Expect = 9.3
 Identities = 21/70 (30%), Positives = 35/70 (50%)
 Frame = -3

Query: 367  IHLSSSRNATSC*RLNMHNV*WFPMQPWLYNLTALHMQVSLPCNQSSVISLLRTCKYLSA 188
            I  S  +N  +  + N H + W P +P+ YNL   ++   LP   +S+ISL +  + L  
Sbjct: 1299 IQFSMQKNVFNYYKFN-HYIYWDPFKPFEYNLKNANLDKDLPSTFTSLISLRQNQENLQP 1357

Query: 187  RASFSSMQPN 158
              + S  +PN
Sbjct: 1358 -TTLSQNEPN 1366


>tr|A8PVM1|A8PVM1_BRUMA Golgi autoantigen, golgin subfamily A member
           5, putative OS=Brugia malayi GN=Bm1_35740 PE=4 SV=1
          Length = 570

 Score = 32.7 bits (73), Expect = 9.3
 Identities = 25/75 (33%), Positives = 36/75 (48%), Gaps = 2/75 (2%)
 Frame = +3

Query: 117 HSDTCRCMEVRLQRFGCMEEKLARALRYLQVRRSEITELWLHGRETCMCKAVRL*SQGCM 296
           HSDT RCM ++  +   M  +L  A      + ++I EL   GRE  + K       G M
Sbjct: 143 HSDTLRCMHMKESQIAVMSVRLQEAEEANIKKDAQIAEL---GRELKLMKEELEAGNGDM 199

Query: 297 GNHY--TLCMLRRQH 335
            N +  TL  L+R+H
Sbjct: 200 TNDHSSTLKKLQREH 214