NBDC - アーカイブトップ - ヘルプ
データベースの説明 | データ項目の説明 | ダウンロード | 利用許諾 | ヘルプ
AcEST | BlastX Result : Swiss-Prot | BlastX Result : TrEMBL | AcESTcontig | About Libraries
NBDC - LSDB Archive
Description of this DB | Description of data items | Download | License
AcEST | BlastX Result : Swiss-Prot | BlastX Result : TrEMBL | AcESTcontig | About Libraries
BP918581
Clone id YMU001_000115_B10
Library
Length 458
Definition Adiantum capillus-veneris mRNA. clone: YMU001_000115_B10.
Accession
Tissue type prothallium
Developmental stage -
Contig ID -
Sequence 
CCCTCTCACGATGAGGACACTCTCAATGCAAAAACACCAAGGGCAACTGTTTAACATTCA
ATGCAAGCAGCTTGGTCTTCTGGAAGTTAACAACAAGTAAACCAGCAACCAACACAAATA
GAACTCAGCCTAGAATTTCCAGTTTCCGGGTTACCAGTAGAAGGCAAAAGAGCAACAGCA
GATCGCTTGAACTCGCGGTGCACCTTCTCAACAAGACGGCAGATCACCTAGCGTTTTCAG
CCAACGGAAGTAGCTAGGGTTTTTGGATCCCAGATCCCTTAACGTTTATCTGCAGTAGAT
CTTCCCCGTCGTTTCCTCCAGCAGCAGAGCTCCTACTTTTGCAATTCCGTCGCCGGATCT
TGTCCAAATAAGGTAGCGTTTTCAGTTTTCAACCCTTAACCTTCGAAGATTCAGCCCCTA
GCCTCGCAGATCTCACCAACGCGCAGTAGATCCTAGCT
■■Homology search results ■■ -
sp_hit_id Q12140
Definition sp|Q12140|BSC1_YEAST Bypass of stop codon protein 1 OS=Saccharomyces cerevisiae
Align length 53
Score (bit) 31.2
E-value 2.3
Report 
BLASTX 2.2.19 [Nov-02-2008]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= BP918581|Adiantum capillus-veneris mRNA, clone:
YMU001_000115_B10.
         (458 letters)

Database: uniprot_sprot.fasta 
           412,525 sequences; 148,809,765 total letters

Searching..................................................done



                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

sp|Q12140|BSC1_YEAST Bypass of stop codon protein 1 OS=Saccharom...    31   2.3  
sp|P53756|YN99_YEAST Uncharacterized ABC transporter ATP-binding...    30   5.0  
sp|Q8HXH0|LONF3_MACFA LON peptidase N-terminal domain and RING f...    29   8.6  

>sp|Q12140|BSC1_YEAST Bypass of stop codon protein 1
           OS=Saccharomyces cerevisiae GN=BSC1 PE=1 SV=1
          Length = 328

 Score = 31.2 bits (69), Expect = 2.3
 Identities = 18/53 (33%), Positives = 26/53 (49%), Gaps = 1/53 (1%)
 Frame = +3

Query: 24  QCK-NTKGNCLTFNASSLVFWKLTTSKPATNTNRTQPRISSFRVTSRRQKSNS 179
           QCK N  G C   ++SS+    +TTS   T++  T    +S   TS    S+S
Sbjct: 148 QCKGNNDGTCTKASSSSITTSSITTSSTTTSSTTTSSTTTSSSTTSSSTTSSS 200


>sp|P53756|YN99_YEAST Uncharacterized ABC transporter ATP-binding
            protein/permease YNR070W OS=Saccharomyces cerevisiae
            GN=YNR070W PE=2 SV=1
          Length = 1333

 Score = 30.0 bits (66), Expect = 5.0
 Identities = 21/62 (33%), Positives = 28/62 (45%), Gaps = 2/62 (3%)
 Frame = +3

Query: 60   NASSLVFWKLTTSKPATNTNRTQPRISSFRVTSRRQKSN--SRSLELAVHLLNKTADHLA 233
            N+    F  +  S PATN  + +  ++      R  KSN    SL L  H LN+   HL 
Sbjct: 1095 NSLFACFMAIVISAPATNQIQERATVAKELYEVRESKSNMFHWSLLLITHYLNELPYHLL 1154

Query: 234  FS 239
            FS
Sbjct: 1155 FS 1156


>sp|Q8HXH0|LONF3_MACFA LON peptidase N-terminal domain and RING
           finger protein 3 OS=Macaca fascicularis GN=LONRF3 PE=2
           SV=1
          Length = 718

 Score = 29.3 bits (64), Expect = 8.6
 Identities = 15/43 (34%), Positives = 22/43 (51%), Gaps = 1/43 (2%)
 Frame = -2

Query: 388 KLKTLPYLDKIRRRNCKSRSSAAGGNDGEDLLQ-INVKGSGIQ 263
           KL+ + + D +   +C S+  AA   DG  L+    VKG G Q
Sbjct: 305 KLRPMGFKDNLELPHCSSQEEAAARGDGSSLMDPAKVKGDGQQ 347
tr_hit_id A4I6T1
Definition tr|A4I6T1|A4I6T1_LEIIN Protein kinase, putative OS=Leishmania infantum
Align length 118
Score (bit) 35.0
E-value 1.9
Report 
BLASTX 2.2.19 [Nov-02-2008]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= BP918581|Adiantum capillus-veneris mRNA, clone:
YMU001_000115_B10.
         (458 letters)

Database: uniprot_trembl.fasta 
           7,341,751 sequences; 2,391,615,440 total letters

Searching..................................................done



                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

tr|A4I6T1|A4I6T1_LEIIN Protein kinase, putative OS=Leishmania in...    35   1.9  
tr|B4L2G4|B4L2G4_DROMO GI15403 OS=Drosophila mojavensis GN=GI154...    34   4.1  
tr|B7PVY6|B7PVY6_IXOSC Putative uncharacterized protein OS=Ixode...    33   7.1  
tr|A4HHD7|A4HHD7_LEIBR Putative uncharacterized protein OS=Leish...    33   7.1  
tr|B1SUG0|B1SUG0_9BACI Putative uncharacterized protein OS=Geoba...    33   9.2  
tr|Q653Z4|Q653Z4_ORYSJ Putative uncharacterized protein OSJNBb00...    33   9.2  
tr|A2YFX0|A2YFX0_ORYSI Putative uncharacterized protein OS=Oryza...    33   9.2  

>tr|A4I6T1|A4I6T1_LEIIN Protein kinase, putative OS=Leishmania
           infantum GN=LinJ31.1920 PE=4 SV=1
          Length = 2283

 Score = 35.0 bits (79), Expect = 1.9
 Identities = 30/118 (25%), Positives = 50/118 (42%), Gaps = 14/118 (11%)
 Frame = +3

Query: 18  HSQCKNTKGNCLTFNASSLVFWKLTTSKPATNTNRTQPRISSFRVTSRRQKSNSRS---- 185
           HS       +   F+ASSLV  +   S P ++++R    ++  +  S R + N  S    
Sbjct: 242 HSSHAAISSSISCFHASSLVTPRALPSYPLSSSSRNSMALTKLQAESSRSEGNRSSSPTG 301

Query: 186 --------LELAVHLLNKTADHLAFSANGSS*GFWIPDPLTFICSRSS--PSFPPAAE 329
                   +  A+ L ++  DHL   A  S  G ++P   TF  ++ +  P   P AE
Sbjct: 302 TCGGAACIISDALALTHEKPDHLLLRALASEEGAYVPPLSTFTTTQCTIPPITAPQAE 359


>tr|B4L2G4|B4L2G4_DROMO GI15403 OS=Drosophila mojavensis GN=GI15403
           PE=4 SV=1
          Length = 218

 Score = 33.9 bits (76), Expect = 4.1
 Identities = 19/57 (33%), Positives = 30/57 (52%)
 Frame = +3

Query: 258 GFWIPDPLTFICSRSSPSFPPAAELLLLQFRRRILSK*GSVFSFQPLTFEDSAPSLA 428
           G  +  P T +C+ S+PS PP A+L ++  + R         S + +TFED + S A
Sbjct: 138 GLQLGPPQTLLCAASTPSAPPPAQLQIVTLKPR---------SEKMVTFEDESKSAA 185


>tr|B7PVY6|B7PVY6_IXOSC Putative uncharacterized protein OS=Ixodes
           scapularis GN=IscW_ISCW008005 PE=4 SV=1
          Length = 134

 Score = 33.1 bits (74), Expect = 7.1
 Identities = 15/31 (48%), Positives = 21/31 (67%), Gaps = 1/31 (3%)
 Frame = -3

Query: 324 LLEETTGKIYCR*TLRDLGS-KNPSYFRWLK 235
           +++  TGK+YC  TL  +GS +NPS  RW K
Sbjct: 15  VIKNQTGKLYCNVTLPAVGSDENPSQIRWYK 45


>tr|A4HHD7|A4HHD7_LEIBR Putative uncharacterized protein
           OS=Leishmania braziliensis GN=LbrM29_V2.1330 PE=4 SV=1
          Length = 1962

 Score = 33.1 bits (74), Expect = 7.1
 Identities = 27/97 (27%), Positives = 39/97 (40%), Gaps = 4/97 (4%)
 Frame = +1

Query: 28  AKTPRATV*HSMQAAWSSGS*QQVNQQPTQIELSL----EFPVSGLPVEGKRATADRLNS 195
           A+  R+   +  +A WSS      +  P     S      +PVS L   G+R  +D  + 
Sbjct: 376 ARNGRSVTSYDTEALWSSVRSAGAHAPPQSSRASAASRSSYPVSSLEHGGRRRASDTTSV 435

Query: 196 RCTFSTRRQIT*RFQPTEVARVFGSQIP*RLSAVDLP 306
           RC+  T+   T          V GS +P  LS   LP
Sbjct: 436 RCSSHTQETAT---------AVAGSSVPRILSHASLP 463


>tr|B1SUG0|B1SUG0_9BACI Putative uncharacterized protein
           OS=Geobacillus sp. WCH70 GN=GWCH70DRAFT_2556 PE=4 SV=1
          Length = 92

 Score = 32.7 bits (73), Expect = 9.2
 Identities = 21/65 (32%), Positives = 28/65 (43%)
 Frame = -1

Query: 329 LCCWRKRRGRSTADKR*GIWDPKTLATSVG*KR*VICRLVEKVHREFKRSAVALLPSTGN 150
           LCCW +  G+ T   +  IWD +              R+ E +  E KR A  +LP    
Sbjct: 13  LCCWLQVPGKETCGAQGNIWDYR--------------RVNELLTEEEKRGATFVLPLATI 58

Query: 149 PETGN 135
            ETGN
Sbjct: 59  IETGN 63


>tr|Q653Z4|Q653Z4_ORYSJ Putative uncharacterized protein
           OSJNBb0065C04.44 (Putative uncharacterized protein)
           OS=Oryza sativa subsp. japonica GN=OSJNBb0065C04.44 PE=4
           SV=1
          Length = 71

 Score = 32.7 bits (73), Expect = 9.2
 Identities = 17/55 (30%), Positives = 23/55 (41%)
 Frame = -3

Query: 336 VGALLLEETTGKIYCR*TLRDLGSKNPSYFRWLKTLGDLPSC*EGAPRVQAICCC 172
           + ALL+    GK  CR    D+   +     W KT G  P   +  P +   CCC
Sbjct: 19  IAALLIPSGEGKFVCRGKCEDIRDCD----NWCKTAGGYPQGGQCVPPLYQFCCC 69


>tr|A2YFX0|A2YFX0_ORYSI Putative uncharacterized protein OS=Oryza
           sativa subsp. indica GN=OsI_24015 PE=4 SV=1
          Length = 71

 Score = 32.7 bits (73), Expect = 9.2
 Identities = 17/55 (30%), Positives = 23/55 (41%)
 Frame = -3

Query: 336 VGALLLEETTGKIYCR*TLRDLGSKNPSYFRWLKTLGDLPSC*EGAPRVQAICCC 172
           + ALL+    GK  CR    D+   +     W KT G  P   +  P +   CCC
Sbjct: 19  IAALLIPSGEGKFVCRGKCEDIRDCD----NWCKTAGGYPQGGQCVPPLYQFCCC 69