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NBDC - LSDB Archive
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AcEST | BlastX Result : Swiss-Prot | BlastX Result : TrEMBL | AcESTcontig | About Libraries
BP918582
Clone id YMU001_000115_B11
Library
Length 511
Definition Adiantum capillus-veneris mRNA. clone: YMU001_000115_B11.
Accession
Tissue type prothallium
Developmental stage -
Contig ID -
Sequence 
GGAAGAATTTGCGGCCGCGAATCCCATCTCTCGTATAGTGTACACATACTTACACTTAAA
ACTCACTTATAAGTGAGTACACACATTTTTATTAAGTGTCCGGCCACTTTGGCCGGACAA
CTTATAAGTGTACTTAATAAAAAAAAGAACCCTCACAAATGGACGATCGTGGGTTTCTTA
CGCTTGAGCCTTCTCTCATCTCTCTTTCGATCTGCTGCGCATCCTTCTTCTTGCAGTGCG
TGCCCATCTCCTCCTGCTCTCGCACACTCCTTGCACTCAACAAACTAGTATCAGAGCAAG
GCTACGTGCCTTGGGCGAATCTCTCGTGCGTAGGAAGGAGTTTCTCTCTCCTGCGCAGAT
TTTCTCTCTCTAGAAACAGCAGCGCAATAACTTTCTCTCTCTTCTCCAAGTACGGTACGT
CGCCTACCATTGCTTACACGCTGAAAACAGGGAATCACAAGTCCAAAACAGGTGCTTTTG
GGCTGTTTTTGGCTAAAAACAGGCCATTTTC
■■Homology search results ■■ -
sp_hit_id O01761
Definition sp|O01761|UNC89_CAEEL Muscle M-line assembly protein unc-89 OS=Caenorhabditis elegans
Align length 60
Score (bit) 30.4
E-value 4.5
Report 
BLASTX 2.2.19 [Nov-02-2008]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= BP918582|Adiantum capillus-veneris mRNA, clone:
YMU001_000115_B11.
         (489 letters)

Database: uniprot_sprot.fasta 
           412,525 sequences; 148,809,765 total letters

Searching..................................................done



                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

sp|O01761|UNC89_CAEEL Muscle M-line assembly protein unc-89 OS=C...    30   4.5  
sp|Q4FPT7|GPH_PSYA2 Phosphoglycolate phosphatase OS=Psychrobacte...    30   5.8  
sp|Q9C507|PP111_ARATH Putative pentatricopeptide repeat-containi...    30   7.6  
sp|Q9WUH7|SEM4G_MOUSE Semaphorin-4G OS=Mus musculus GN=Sema4g PE...    29   9.9  
sp|Q66FB7|MUTL_YERPS DNA mismatch repair protein mutL OS=Yersini...    29   9.9  
sp|A4TRP1|MUTL_YERPP DNA mismatch repair protein mutL OS=Yersini...    29   9.9  
sp|Q1CEF3|MUTL_YERPN DNA mismatch repair protein mutL OS=Yersini...    29   9.9  
sp|Q8ZIW4|MUTL_YERPE DNA mismatch repair protein mutL OS=Yersini...    29   9.9  
sp|Q1C0Z8|MUTL_YERPA DNA mismatch repair protein mutL OS=Yersini...    29   9.9  
sp|A7FMY1|MUTL_YERP3 DNA mismatch repair protein mutL OS=Yersini...    29   9.9  

>sp|O01761|UNC89_CAEEL Muscle M-line assembly protein unc-89
            OS=Caenorhabditis elegans GN=unc-89 PE=1 SV=3
          Length = 8081

 Score = 30.4 bits (67), Expect = 4.5
 Identities = 18/60 (30%), Positives = 29/60 (48%)
 Frame = -3

Query: 469  QKQPKSTCFGLVIPCFQRVSNGRRRTVLGEERESYCAAVSRERKSAQERETPSYAREIRP 290
            +++P+S  F L IP  ++   G  R VLG ++    +      KSA+  E  S A  + P
Sbjct: 5017 EEKPESGEFSLTIPSSKKSDGGAYRVVLGNDKGEVYSGSVVHVKSAKSSEPTSGANFLSP 5076


>sp|Q4FPT7|GPH_PSYA2 Phosphoglycolate phosphatase OS=Psychrobacter
           arcticus (strain DSM 17307 / 273-4) GN=Psyc_2124 PE=3
           SV=1
          Length = 230

 Score = 30.0 bits (66), Expect = 5.8
 Identities = 16/41 (39%), Positives = 22/41 (53%), Gaps = 1/41 (2%)
 Frame = +2

Query: 365 ITFSLFSKYGTSPTIAY-TLKTGNHKSKTGAFGLFLAKNRP 484
           + F  +SK G S T+AY  + +G  K K   F L L  N+P
Sbjct: 80  VFFDAYSKMGGSKTVAYPNVDSGLKKLKAAGFKLALVTNKP 120


>sp|Q9C507|PP111_ARATH Putative pentatricopeptide repeat-containing
           protein At1g69350, mitochondrial OS=Arabidopsis thaliana
           GN=PCMP-E66 PE=3 SV=1
          Length = 787

 Score = 29.6 bits (65), Expect = 7.6
 Identities = 14/47 (29%), Positives = 25/47 (53%)
 Frame = +2

Query: 161 LEPSLISLSICCASFFLQCVPISSCSRTLLALNKLVSEQGYVPWANL 301
           L+P+  SLS+     + +C  +S C   L    ++VS++  V W +L
Sbjct: 334 LDPNYESLSLALVELYAECGKLSDCETVL----RVVSDRNIVAWNSL 376


>sp|Q9WUH7|SEM4G_MOUSE Semaphorin-4G OS=Mus musculus GN=Sema4g PE=1
           SV=1
          Length = 837

 Score = 29.3 bits (64), Expect = 9.9
 Identities = 19/57 (33%), Positives = 29/57 (50%)
 Frame = +2

Query: 122 KEPSQMDDRGFLTLEPSLISLSICCASFFLQCVPISSCSRTLLALNKLVSEQGYVPW 292
           +EP  +D+   L + P   SL +  AS  LQ  P+SSCSR     + +++   Y  W
Sbjct: 473 REPQSVDN---LVISPMQHSLYVGAASGVLQ-FPLSSCSRYQSCYDCILARDPYCGW 525


>sp|Q66FB7|MUTL_YERPS DNA mismatch repair protein mutL OS=Yersinia
           pseudotuberculosis GN=mutL PE=3 SV=1
          Length = 635

 Score = 29.3 bits (64), Expect = 9.9
 Identities = 17/42 (40%), Positives = 24/42 (57%), Gaps = 2/42 (4%)
 Frame = -3

Query: 418 RVSNGRRRTVLGEERESYCA--AVSRERKSAQERETPSYARE 299
           RV+ G  +    E  +S  A  AV+RER SA+ER  P+Y  +
Sbjct: 355 RVAAGTNKYAQPEAAKSSAAEQAVARERSSARERAAPAYKED 396


>sp|A4TRP1|MUTL_YERPP DNA mismatch repair protein mutL OS=Yersinia
           pestis (strain Pestoides F) GN=mutL PE=3 SV=1
          Length = 635

 Score = 29.3 bits (64), Expect = 9.9
 Identities = 17/42 (40%), Positives = 24/42 (57%), Gaps = 2/42 (4%)
 Frame = -3

Query: 418 RVSNGRRRTVLGEERESYCA--AVSRERKSAQERETPSYARE 299
           RV+ G  +    E  +S  A  AV+RER SA+ER  P+Y  +
Sbjct: 355 RVAAGTNKYAQPEAAKSSAAEQAVARERSSARERAAPAYKED 396


>sp|Q1CEF3|MUTL_YERPN DNA mismatch repair protein mutL OS=Yersinia
           pestis bv. Antiqua (strain Nepal516) GN=mutL PE=3 SV=1
          Length = 635

 Score = 29.3 bits (64), Expect = 9.9
 Identities = 17/42 (40%), Positives = 24/42 (57%), Gaps = 2/42 (4%)
 Frame = -3

Query: 418 RVSNGRRRTVLGEERESYCA--AVSRERKSAQERETPSYARE 299
           RV+ G  +    E  +S  A  AV+RER SA+ER  P+Y  +
Sbjct: 355 RVAAGTNKYAQPEAAKSSAAEQAVARERSSARERAAPAYKED 396


>sp|Q8ZIW4|MUTL_YERPE DNA mismatch repair protein mutL OS=Yersinia
           pestis GN=mutL PE=3 SV=1
          Length = 635

 Score = 29.3 bits (64), Expect = 9.9
 Identities = 17/42 (40%), Positives = 24/42 (57%), Gaps = 2/42 (4%)
 Frame = -3

Query: 418 RVSNGRRRTVLGEERESYCA--AVSRERKSAQERETPSYARE 299
           RV+ G  +    E  +S  A  AV+RER SA+ER  P+Y  +
Sbjct: 355 RVAAGTNKYAQPEAAKSSAAEQAVARERSSARERAAPAYKED 396


>sp|Q1C0Z8|MUTL_YERPA DNA mismatch repair protein mutL OS=Yersinia
           pestis bv. Antiqua (strain Antiqua) GN=mutL PE=3 SV=1
          Length = 635

 Score = 29.3 bits (64), Expect = 9.9
 Identities = 17/42 (40%), Positives = 24/42 (57%), Gaps = 2/42 (4%)
 Frame = -3

Query: 418 RVSNGRRRTVLGEERESYCA--AVSRERKSAQERETPSYARE 299
           RV+ G  +    E  +S  A  AV+RER SA+ER  P+Y  +
Sbjct: 355 RVAAGTNKYAQPEAAKSSAAEQAVARERSSARERAAPAYKED 396


>sp|A7FMY1|MUTL_YERP3 DNA mismatch repair protein mutL OS=Yersinia
           pseudotuberculosis serotype O:1b (strain IP 31758)
           GN=mutL PE=3 SV=1
          Length = 635

 Score = 29.3 bits (64), Expect = 9.9
 Identities = 17/42 (40%), Positives = 24/42 (57%), Gaps = 2/42 (4%)
 Frame = -3

Query: 418 RVSNGRRRTVLGEERESYCA--AVSRERKSAQERETPSYARE 299
           RV+ G  +    E  +S  A  AV+RER SA+ER  P+Y  +
Sbjct: 355 RVAAGTNKYAQPEAAKSSAAEQAVARERSSARERAAPAYKED 396
tr_hit_id A8WZG4
Definition tr|A8WZG4|A8WZG4_CAEBR Putative uncharacterized protein OS=Caenorhabditis briggsae
Align length 52
Score (bit) 33.5
E-value 5.5
Report 
BLASTX 2.2.19 [Nov-02-2008]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= BP918582|Adiantum capillus-veneris mRNA, clone:
YMU001_000115_B11.
         (489 letters)

Database: uniprot_trembl.fasta 
           7,341,751 sequences; 2,391,615,440 total letters

Searching..................................................done



                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

tr|A8WZG4|A8WZG4_CAEBR Putative uncharacterized protein OS=Caeno...    33   5.5  
tr|B5DKQ7|B5DKQ7_DROPS GA22915 OS=Drosophila pseudoobscura pseud...    33   9.3  
tr|B4H3Q6|B4H3Q6_DROPE GL15221 OS=Drosophila persimilis GN=GL152...    33   9.3  
tr|B6KHD7|B6KHD7_TOXGO Protein kinase, putative OS=Toxoplasma go...    33   9.3  

>tr|A8WZG4|A8WZG4_CAEBR Putative uncharacterized protein
           OS=Caenorhabditis briggsae GN=CBG05239 PE=3 SV=2
          Length = 876

 Score = 33.5 bits (75), Expect = 5.5
 Identities = 15/52 (28%), Positives = 28/52 (53%)
 Frame = +2

Query: 119 KKEPSQMDDRGFLTLEPSLISLSICCASFFLQCVPISSCSRTLLALNKLVSE 274
           +KE S  D +  L +    +SL+ICC +FF+ C+  +     ++ +N   +E
Sbjct: 337 EKEKSDFDWQLLLIIGIPCVSLTICCIAFFVCCLKCAKLKMAMMRMNVFSNE 388


>tr|B5DKQ7|B5DKQ7_DROPS GA22915 OS=Drosophila pseudoobscura
           pseudoobscura GN=GA22915 PE=4 SV=1
          Length = 499

 Score = 32.7 bits (73), Expect = 9.3
 Identities = 24/58 (41%), Positives = 34/58 (58%), Gaps = 2/58 (3%)
 Frame = +1

Query: 304 VRRKEFLSPAQIFSL*KQQRNNFLSLLQVRYVAYHC--LHAENRESQVQNRCFWAVFG 471
           +RR +FLSP+  + + ++ RN+  S +Q RY  +    LH E R SQ Q R FW  FG
Sbjct: 70  LRRFDFLSPSSSYQINRRYRNS--SSVQ-RYYGHQLWKLH-ETRLSQPQLRAFWRHFG 123


>tr|B4H3Q6|B4H3Q6_DROPE GL15221 OS=Drosophila persimilis GN=GL15221
           PE=4 SV=1
          Length = 501

 Score = 32.7 bits (73), Expect = 9.3
 Identities = 24/58 (41%), Positives = 34/58 (58%), Gaps = 2/58 (3%)
 Frame = +1

Query: 304 VRRKEFLSPAQIFSL*KQQRNNFLSLLQVRYVAYHC--LHAENRESQVQNRCFWAVFG 471
           +RR +FLSP+  + + ++ RN+  S +Q RY  +    LH E R SQ Q R FW  FG
Sbjct: 72  LRRFDFLSPSSSYQINRRYRNS--SSVQ-RYYGHQLWKLH-ETRLSQPQLRAFWRHFG 125


>tr|B6KHD7|B6KHD7_TOXGO Protein kinase, putative OS=Toxoplasma gondii
            ME49 GN=TGME49_049260 PE=4 SV=1
          Length = 1838

 Score = 32.7 bits (73), Expect = 9.3
 Identities = 17/39 (43%), Positives = 26/39 (66%)
 Frame = -3

Query: 418  RVSNGRRRTVLGEERESYCAAVSRERKSAQERETPSYAR 302
            R S+GRRR++  EERES+ A+ S ++K  +E E  +  R
Sbjct: 1070 RGSSGRRRSLDSEERESHPASRSGDKKRGRETERSNRGR 1108