BP918585 |
Clone id |
YMU001_000115_C02 |
Library |
YMU01 |
Length |
521 |
Definition |
Adiantum capillus-veneris mRNA. clone: YMU001_000115_C02. |
Accession |
BP918585 |
Tissue type |
prothallium |
Developmental stage |
- |
Contig ID |
- |
Sequence |
GCAGATTCAGGACAGATGGATACTCTTGGTACACATGTGATATGTGGTGGGCACGAGGAG TCACTCCAGAGCTTGGAGTCAGAGTGCCATGGTCTCTATGATAAGGGACATGATTGCCAT GAGTTGAGTTCTGAGTTGGAGGTGGCAGAGGTTCCCAGGGCTGCATCAACATTCGGTGTC CTCATGTACGAGATGCTGATCTCGAGGCTCGACATAGCAGCTGCAGTGGGAGCATTTGCA GTAGGGTTGATTAGTTGTTCGATAACTGATCTCGGCATAGAGCATAGGGGAGGTTTGCAG GTATTGGACCGATACTTGCAGGAGTGCATGAGCTCTTGTAGACTATTTGTAGAGCTTGGA GCTAGCTCTGTGTGGCTTCCGCAGCAGGATGTTTGTCTATCAATAGAGCAAGATGCACTA GCTCATCGAGAGTCAGTGGGCATAGGTTGAGAGAATCTCTCACCTTCTATTAGTTGTACA CTAGTAGATCTTGCTTAAAGGCACATTGGCCTTTAAGTGGG |
■■Homology search results ■■ |
- |
Swiss-Prot (release 56.9) |
Link to BlastX Result : Swiss-Prot |
sp_hit_id |
P10978 |
Definition |
sp|P10978|POLX_TOBAC Retrovirus-related Pol polyprotein from transposon TNT 1-94 OS=Nicotiana tabacum |
Align length |
69 |
Score (bit) |
35.4 |
E-value |
0.16 |
Report |
|
TrEMBL (release 39.9) |
Link to BlastX Result : TrEMBL |
tr_hit_id |
Q53QA4 |
Definition |
tr|Q53QA4|Q53QA4_ORYSJ Retrotransposon protein, putative, Ty1-copia subclass OS=Oryza sativa subsp. japonica |
Align length |
78 |
Score (bit) |
39.7 |
E-value |
0.09 |
Report |
BLASTX 2.2.19 [Nov-02-2008]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402.
Query= BP918585|Adiantum capillus-veneris mRNA, clone: YMU001_000115_C02. (521 letters)
Database: uniprot_trembl.fasta 7,341,751 sequences; 2,391,615,440 total letters
Searching..................................................done
Score E Sequences producing significant alignments: (bits) Value
tr|Q53QA4|Q53QA4_ORYSJ Retrotransposon protein, putative, Ty1-co... 40 0.090 tr|Q2QQ81|Q2QQ81_ORYSJ Retrotransposon protein, putative, Ty1-co... 40 0.090 tr|Q0IN60|Q0IN60_ORYSJ Os12g0503600 protein OS=Oryza sativa subs... 40 0.090 tr|Q01M93|Q01M93_ORYSA OSIGBa0146N20.7 protein OS=Oryza sativa G... 40 0.090 tr|Q75IK3|Q75IK3_ORYSJ Putative polyprotein OS=Oryza sativa subs... 39 0.12 tr|A5C2D2|A5C2D2_VITVI Putative uncharacterized protein OS=Vitis... 39 0.15 tr|A5B5N4|A5B5N4_VITVI Putative uncharacterized protein OS=Vitis... 39 0.15 tr|Q0E1G5|Q0E1G5_ORYSJ Os02g0450400 protein OS=Oryza sativa subs... 39 0.20 tr|B8YLY7|B8YLY7_LOTJA Gag-Pol polyprotein OS=Lotus japonicus PE... 38 0.26 tr|A5BJP3|A5BJP3_VITVI Putative uncharacterized protein (Fragmen... 38 0.26 tr|A5AQV5|A5AQV5_VITVI Putative uncharacterized protein OS=Vitis... 38 0.26 tr|A5AMT8|A5AMT8_VITVI Putative uncharacterized protein OS=Vitis... 38 0.26 tr|B8YLY6|B8YLY6_MEDTR Gag-Pol polyprotein OS=Medicago truncatul... 38 0.34 tr|B8YLY5|B8YLY5_MEDTR Gag-Pol polyprotein OS=Medicago truncatul... 38 0.34 tr|B8YLY4|B8YLY4_MEDTR Gag-Pol polyprotein OS=Medicago truncatul... 38 0.34 tr|B8YLY3|B8YLY3_MEDTR Gag-Pol polyprotein OS=Medicago truncatul... 38 0.34 tr|A5C9T3|A5C9T3_VITVI Putative uncharacterized protein OS=Vitis... 38 0.34 tr|A5ATR7|A5ATR7_VITVI Putative uncharacterized protein OS=Vitis... 38 0.34 tr|Q2QPE3|Q2QPE3_ORYSJ Retrotransposon protein, putative, Ty1-co... 37 0.45 tr|A5C065|A5C065_VITVI Putative uncharacterized protein OS=Vitis... 37 0.45 tr|A5BAP9|A5BAP9_VITVI Putative uncharacterized protein OS=Vitis... 37 0.45 tr|A5CAX7|A5CAX7_VITVI Putative uncharacterized protein OS=Vitis... 37 0.59 tr|A5C7U8|A5C7U8_VITVI Putative uncharacterized protein OS=Vitis... 37 0.59 tr|A5B743|A5B743_VITVI Putative uncharacterized protein OS=Vitis... 37 0.59 tr|A5B6M5|A5B6M5_VITVI Putative uncharacterized protein OS=Vitis... 37 0.59 tr|A5AS33|A5AS33_VITVI Putative uncharacterized protein OS=Vitis... 37 0.59 tr|A5AM64|A5AM64_VITVI Putative uncharacterized protein OS=Vitis... 37 0.59 tr|Q9ZRJ0|Q9ZRJ0_TOBAC Retrotransposon Tto1 DNA OS=Nicotiana tab... 37 0.77 tr|A5C844|A5C844_VITVI Putative uncharacterized protein OS=Vitis... 37 0.77 tr|A5BYJ3|A5BYJ3_VITVI Putative uncharacterized protein OS=Vitis... 37 0.77
>tr|Q53QA4|Q53QA4_ORYSJ Retrotransposon protein, putative, Ty1-copia subclass OS=Oryza sativa subsp. japonica GN=LOC_Os11g17390 PE=4 SV=1 Length = 1373
Score = 39.7 bits (91), Expect = 0.090 Identities = 25/78 (32%), Positives = 41/78 (52%) Frame = +1
Query: 115 CHELSSELEVAEVPRAASTFGVLMYEMLISRLDIAAAVGAFAVGLISCSITDLGIEHRGG 294 C + +E+E +S G LMY M+ SR D+ ++A+ L+S +++ G EH Sbjct: 1102 CPSIDAEIEYMSRVPYSSAVGSLMYAMVCSRPDL-----SYAMSLVSRYMSNPGKEHWRA 1156
Query: 295 LQVLDRYLQECMSSCRLF 348 +Q + RYL+ SC F Sbjct: 1157 VQWIFRYLRGTTYSCLKF 1174
>tr|Q2QQ81|Q2QQ81_ORYSJ Retrotransposon protein, putative, Ty1-copia subclass OS=Oryza sativa subsp. japonica GN=LOC_Os12g31920 PE=4 SV=1 Length = 1333
Score = 39.7 bits (91), Expect = 0.090 Identities = 25/78 (32%), Positives = 41/78 (52%) Frame = +1
Query: 115 CHELSSELEVAEVPRAASTFGVLMYEMLISRLDIAAAVGAFAVGLISCSITDLGIEHRGG 294 C + +E+E +S G LMY M+ SR D+ ++A+ L+S +++ G EH Sbjct: 1102 CPSIDAEIEYMSRVPYSSAVGSLMYAMVCSRPDL-----SYAMSLVSRYMSNPGKEHWRA 1156
Query: 295 LQVLDRYLQECMSSCRLF 348 +Q + RYL+ SC F Sbjct: 1157 VQWIFRYLRGTTYSCLKF 1174
>tr|Q0IN60|Q0IN60_ORYSJ Os12g0503600 protein OS=Oryza sativa subsp. japonica GN=Os12g0503600 PE=4 SV=1 Length = 1345
Score = 39.7 bits (91), Expect = 0.090 Identities = 25/78 (32%), Positives = 41/78 (52%) Frame = +1
Query: 115 CHELSSELEVAEVPRAASTFGVLMYEMLISRLDIAAAVGAFAVGLISCSITDLGIEHRGG 294 C + +E+E +S G LMY M+ SR D+ ++A+ L+S +++ G EH Sbjct: 1106 CPSIDAEIEYMSRVPYSSAVGSLMYAMVCSRPDL-----SYAMSLVSRYMSNPGKEHWRA 1160
Query: 295 LQVLDRYLQECMSSCRLF 348 +Q + RYL+ SC F Sbjct: 1161 VQWIFRYLRGTTYSCLKF 1178
>tr|Q01M93|Q01M93_ORYSA OSIGBa0146N20.7 protein OS=Oryza sativa GN=OSIGBa0146N20.7 PE=4 SV=1 Length = 1335
Score = 39.7 bits (91), Expect = 0.090 Identities = 26/78 (33%), Positives = 40/78 (51%) Frame = +1
Query: 115 CHELSSELEVAEVPRAASTFGVLMYEMLISRLDIAAAVGAFAVGLISCSITDLGIEHRGG 294 C +E+E +S G LMY M+ SR D+ ++A+ L+S +++ G EH Sbjct: 1104 CPSTDAEIEYMSRVPYSSAVGSLMYAMVCSRPDL-----SYAMSLVSRYMSNPGKEHWRA 1158
Query: 295 LQVLDRYLQECMSSCRLF 348 LQ + RYL+ SC F Sbjct: 1159 LQWIFRYLRGTTYSCLKF 1176
>tr|Q75IK3|Q75IK3_ORYSJ Putative polyprotein OS=Oryza sativa subsp. japonica GN=OSJNBb0016G07.9 PE=4 SV=1 Length = 1175
Score = 39.3 bits (90), Expect = 0.12 Identities = 24/78 (30%), Positives = 40/78 (51%) Frame = +1
Query: 115 CHELSSELEVAEVPRAASTFGVLMYEMLISRLDIAAAVGAFAVGLISCSITDLGIEHRGG 294 C ++E +S G LMY M+ SRLD+ + A+ L+S + + G EH Sbjct: 944 CASTDEDVEYMSRVPYSSVVGSLMYAMVCSRLDL-----SHAMSLVSRYMANPGKEHWKA 998
Query: 295 LQVLDRYLQECMSSCRLF 348 +Q + RYL++ ++C F Sbjct: 999 IQWIFRYLRDTANACLKF 1016
>tr|A5C2D2|A5C2D2_VITVI Putative uncharacterized protein OS=Vitis vinifera GN=VITISV_005442 PE=4 SV=1 Length = 173
Score = 38.9 bits (89), Expect = 0.15 Identities = 28/76 (36%), Positives = 40/76 (52%), Gaps = 2/76 (2%) Frame = +1
Query: 127 SSELEVAEVPRA--ASTFGVLMYEMLISRLDIAAAVGAFAVGLISCSITDLGIEHRGGLQ 300 SSE E E+ + A + G LMY M+ +R DIA VG F S +++LG EH ++ Sbjct: 24 SSEKEKKEMRKVLYALSVGSLMYAMVYTRPDIAHVVGVF-----SKFLSNLGKEHWAAMK 78
Query: 301 VLDRYLQECMSSCRLF 348 + RYL+ C F Sbjct: 79 WILRYLRVTFKICLCF 94
>tr|A5B5N4|A5B5N4_VITVI Putative uncharacterized protein OS=Vitis vinifera GN=VITISV_005765 PE=4 SV=1 Length = 1261
Score = 38.9 bits (89), Expect = 0.15 Identities = 26/68 (38%), Positives = 39/68 (57%) Frame = +1
Query: 163 ASTFGVLMYEMLISRLDIAAAVGAFAVGLISCSITDLGIEHRGGLQVLDRYLQECMSSCR 342 AS G LMY M+ +RLDI A AVG++S ++ G +H ++ + RYL+ + +C Sbjct: 1046 ASAIGSLMYAMVCTRLDI-----AHAVGVVSRFMSXPGKQHWEAVKWILRYLKGSLDTCL 1100
Query: 343 LFVELGAS 366 F GAS Sbjct: 1101 CFT--GAS 1106
>tr|Q0E1G5|Q0E1G5_ORYSJ Os02g0450400 protein OS=Oryza sativa subsp. japonica GN=Os02g0450400 PE=4 SV=1 Length = 1350
Score = 38.5 bits (88), Expect = 0.20 Identities = 25/78 (32%), Positives = 40/78 (51%) Frame = +1
Query: 115 CHELSSELEVAEVPRAASTFGVLMYEMLISRLDIAAAVGAFAVGLISCSITDLGIEHRGG 294 C +E+E +S G LMY M+ SR D+ ++A+ L+S +++ G EH Sbjct: 1102 CPSTDAEIEYMSRVPYSSAVGSLMYAMVCSRPDL-----SYAMSLVSRYMSNPGKEHWRA 1156
Query: 295 LQVLDRYLQECMSSCRLF 348 +Q + RYL+ SC F Sbjct: 1157 VQWIFRYLRGTTYSCLKF 1174
>tr|B8YLY7|B8YLY7_LOTJA Gag-Pol polyprotein OS=Lotus japonicus PE=4 SV=1 Length = 1305
Score = 38.1 bits (87), Expect = 0.26 Identities = 27/67 (40%), Positives = 37/67 (55%), Gaps = 2/67 (2%) Frame = +1
Query: 127 SSELEVAEVPRA--ASTFGVLMYEMLISRLDIAAAVGAFAVGLISCSITDLGIEHRGGLQ 300 SSE E E+ R AS G LMY M+ +R DIA AVG +S + D G EH ++ Sbjct: 1075 SSEAERMEMSRVPYASAVGSLMYAMICTRPDIAQAVGT-----VSRFMADPGKEHWNAVK 1129
Query: 301 VLDRYLQ 321 + RY++ Sbjct: 1130 RILRYIR 1136
>tr|A5BJP3|A5BJP3_VITVI Putative uncharacterized protein (Fragment) OS=Vitis vinifera GN=VITISV_001876 PE=4 SV=1 Length = 1392
Score = 38.1 bits (87), Expect = 0.26 Identities = 25/70 (35%), Positives = 42/70 (60%), Gaps = 2/70 (2%) Frame = +1
Query: 118 HELSSELEVAEVPRA--ASTFGVLMYEMLISRLDIAAAVGAFAVGLISCSITDLGIEHRG 291 H S++ E ++ R AST G LMY M+ +R DI A+A+G++S +++LG H Sbjct: 797 HNPSTDKEKEDMRRVPYASTVGSLMYAMVCTRPDI-----AYAIGVVSHFLSNLGRHHWE 851
Query: 292 GLQVLDRYLQ 321 ++ + RYL+ Sbjct: 852 VVKWIMRYLR 861
|