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NBDC - LSDB Archive
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AcEST | BlastX Result : Swiss-Prot | BlastX Result : TrEMBL | AcESTcontig | About Libraries
BP918586
Clone id YMU001_000115_C03
Library
Length 455
Definition Adiantum capillus-veneris mRNA. clone: YMU001_000115_C03.
Accession
Tissue type prothallium
Developmental stage -
Contig ID -
Sequence 
CCTTACAATTTTTCAACCCTTTTAGGTAGATTATTATGGAATTAGTGGATGTGGCCAAAA
GTGTGTCCGACATGGTTGTGTTGGCAAAATGCTCAACCAAAACTCAGAATAACGTGCAAA
TCAAATCCAAGTATTGGCTTAGCCTTGGTTGCAAACGAGATAAATTGAGCCAACACCTTT
AGAATCCATCTTGTTGGGTGGTATGACTACATATGTGCATGTTGACTAGCTATCTCTCCA
CCACCAAGGTTGCAAGAACTCAATTCCTCAATTCTATTTTGGTCAACATCAAAGTTGTGA
GGTGTTCTTTGTTCCAGACTATCGGACGAGTCTTTGTTTGGTAGACTATCCACTCTACAT
CCTTCAAGCTATCGATGCAAAGGGGGATCAAGGGCGGCCCCTCTCATATAGCCATCAAGT
GCCAACCCCCCTCACATGCAGTTGCCAGAATTGAA
■■Homology search results ■■ -
sp_hit_id Q2QI47
Definition sp|Q2QI47|USH2A_MOUSE Usherin OS=Mus musculus
Align length 56
Score (bit) 30.4
E-value 3.8
Report 
BLASTX 2.2.19 [Nov-02-2008]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= BP918586|Adiantum capillus-veneris mRNA, clone:
YMU001_000115_C03.
         (455 letters)

Database: uniprot_sprot.fasta 
           412,525 sequences; 148,809,765 total letters

Searching..................................................done



                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

sp|Q2QI47|USH2A_MOUSE Usherin OS=Mus musculus GN=Ush2A PE=1 SV=1       30   3.8  
sp|Q8QGW7|LITAF_CHICK Lipopolysaccharide-induced tumor necrosis ...    30   3.8  
sp|Q85FL0|CEMA_ADICA Chloroplast envelope membrane protein OS=Ad...    30   3.8  
sp|O60130|YH7G_SCHPO Uncharacterized transcriptional regulatory ...    30   4.9  
sp|O04514|OPT2_ARATH Probable oligopeptide transporter 2 OS=Arab...    30   6.4  
sp|Q6P828|LITAF_XENTR Lipopolysaccharide-induced tumor necrosis ...    30   6.4  
sp|P53683|CDPK2_ORYSJ Calcium-dependent protein kinase isoform 2...    30   6.4  
sp|Q9S9V0|CDPKV_ARATH Calcium-dependent protein kinase 31 OS=Ara...    29   8.4  

>sp|Q2QI47|USH2A_MOUSE Usherin OS=Mus musculus GN=Ush2A PE=1 SV=1
          Length = 5193

 Score = 30.4 bits (67), Expect = 3.8
 Identities = 18/56 (32%), Positives = 26/56 (46%)
 Frame = +2

Query: 173 TPLESILLGGMTTYVHVD*LSLHHQGCKNSIPQFYFGQHQSCEVFFVPDYRTSLCL 340
           +PL + LL G+ + +  D   LH     +S+  F FG HQ+C     P     L L
Sbjct: 93  SPLYTALLEGLRSCIPADDGDLHPYSRSSSV-SFMFGSHQNCPSLRAPRLAAELTL 147


>sp|Q8QGW7|LITAF_CHICK Lipopolysaccharide-induced tumor necrosis
           factor-alpha factor homolog OS=Gallus gallus GN=LITAF
           PE=2 SV=1
          Length = 148

 Score = 30.4 bits (67), Expect = 3.8
 Identities = 14/26 (53%), Positives = 17/26 (65%)
 Frame = -2

Query: 430 GGWHLMAI*EGPPLIPLCIDSLKDVE 353
           GG  L+    G  LIP C+D+LKDVE
Sbjct: 107 GGLFLLGCIAGCCLIPFCVDALKDVE 132


>sp|Q85FL0|CEMA_ADICA Chloroplast envelope membrane protein
           OS=Adiantum capillus-veneris GN=cemA PE=2 SV=2
          Length = 464

 Score = 30.4 bits (67), Expect = 3.8
 Identities = 16/52 (30%), Positives = 23/52 (44%)
 Frame = -1

Query: 419 LDGYMRGAALDPPLHR*LEGCRVDSLPNKDSSDSLEQRTPHNFDVDQNRIEE 264
           +DGY  G+ LDPPLH  L+      +     S+S  +    N  V    + E
Sbjct: 71  VDGYPAGSCLDPPLHEPLDTSTPKKISLVSCSNSYMRNKTDNGKVGSRNVSE 122


>sp|O60130|YH7G_SCHPO Uncharacterized transcriptional regulatory
           protein C16G5.16 OS=Schizosaccharomyces pombe
           GN=SPBC16G5.16 PE=1 SV=1
          Length = 827

 Score = 30.0 bits (66), Expect = 4.9
 Identities = 21/76 (27%), Positives = 38/76 (50%), Gaps = 2/76 (2%)
 Frame = +3

Query: 222 LTSYLSTTKVAR--TQFLNSILVNIKVVRCSLFQTIGRVFVW*TIHSTSFKLSMQRGIKG 395
           L SYL  ++V +   +++ +I++ +K      F+ I  +F    IHS S  +  Q G   
Sbjct: 457 LPSYLKMSEVPKFSPKWIQAIILELK------FRQIELIFYRPFIHSISTPIDNQNGSPM 510

Query: 396 GPSHIAIKCQPPSHAV 443
            P++ A+KC   +  V
Sbjct: 511 KPANFALKCAQSAERV 526


>sp|O04514|OPT2_ARATH Probable oligopeptide transporter 2
           OS=Arabidopsis thaliana GN=OPT2 PE=2 SV=1
          Length = 722

 Score = 29.6 bits (65), Expect = 6.4
 Identities = 21/73 (28%), Positives = 38/73 (52%), Gaps = 1/73 (1%)
 Frame = +3

Query: 195 WVV*LHMCMLTSYLSTTKVARTQFLNSILVNIKVVRCSLFQTIGRVFVW*TIHSTSFKL- 371
           W + L  C+L S+L+T    RTQ L   +++++VV   L + + RV     +  T +K+ 
Sbjct: 45  WFLGLLSCILLSFLNTFFGYRTQPLMITMISVQVVTLPLGKLMARV-----LPETKYKIG 99

Query: 372 SMQRGIKGGPSHI 410
           S +     GP ++
Sbjct: 100 SWEFSFNPGPFNV 112


>sp|Q6P828|LITAF_XENTR Lipopolysaccharide-induced tumor necrosis
           factor-alpha factor homolog OS=Xenopus tropicalis
           GN=litaf PE=2 SV=1
          Length = 148

 Score = 29.6 bits (65), Expect = 6.4
 Identities = 15/26 (57%), Positives = 17/26 (65%)
 Frame = -2

Query: 430 GGWHLMAI*EGPPLIPLCIDSLKDVE 353
           GG  L+    G  LIP CIDSLKDV+
Sbjct: 107 GGLCLLGCIGGCCLIPFCIDSLKDVD 132


>sp|P53683|CDPK2_ORYSJ Calcium-dependent protein kinase isoform 2
           OS=Oryza sativa subsp. japonica GN=CPK2 PE=2 SV=2
          Length = 533

 Score = 29.6 bits (65), Expect = 6.4
 Identities = 16/45 (35%), Positives = 23/45 (51%)
 Frame = +2

Query: 80  VGKMLNQNSE*RANQIQVLA*PWLQTR*IEPTPLESILLGGMTTY 214
           V KML Q+ + R    QVL  PWL+       P++S +L  M  +
Sbjct: 320 VRKMLTQDPKKRITSAQVLQHPWLRDGEASDKPIDSAVLSRMKQF 364


>sp|Q9S9V0|CDPKV_ARATH Calcium-dependent protein kinase 31
           OS=Arabidopsis thaliana GN=CPK31 PE=2 SV=2
          Length = 484

 Score = 29.3 bits (64), Expect = 8.4
 Identities = 12/45 (26%), Positives = 25/45 (55%)
 Frame = +2

Query: 80  VGKMLNQNSE*RANQIQVLA*PWLQTR*IEPTPLESILLGGMTTY 214
           V +MLN+N + R +  +VL  PW++       P++ ++L  +  +
Sbjct: 267 VNRMLNRNPKERISAAEVLGHPWMKDGEASDKPIDGVVLSRLKQF 311
tr_hit_id A9Y8M0
Definition tr|A9Y8M0|A9Y8M0_9ASPA Putative uncharacterized protein ycf1 (Fragment) OS=Dichaea riopalenquensis
Align length 36
Score (bit) 33.5
E-value 5.4
Report 
BLASTX 2.2.19 [Nov-02-2008]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= BP918586|Adiantum capillus-veneris mRNA, clone:
YMU001_000115_C03.
         (455 letters)

Database: uniprot_trembl.fasta 
           7,341,751 sequences; 2,391,615,440 total letters

Searching..................................................done



                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

tr|A9Y8M0|A9Y8M0_9ASPA Putative uncharacterized protein ycf1 (Fr...    33   5.4  
tr|A9Y8K3|A9Y8K3_9ASPA Putative uncharacterized protein ycf1 (Fr...    33   5.4  
tr|A9Y8K2|A9Y8K2_9ASPA Putative uncharacterized protein ycf1 (Fr...    33   5.4  
tr|B4M3X6|B4M3X6_DROVI GJ10821 OS=Drosophila virilis GN=GJ10821 ...    33   5.4  

>tr|A9Y8M0|A9Y8M0_9ASPA Putative uncharacterized protein ycf1
           (Fragment) OS=Dichaea riopalenquensis GN=ycf1 PE=4 SV=1
          Length = 485

 Score = 33.5 bits (75), Expect = 5.4
 Identities = 14/36 (38%), Positives = 22/36 (61%)
 Frame = -2

Query: 385 PLCIDSLKDVEWIVYQTKTRPIVWNKEHLTTLMLTK 278
           P+C+   +D ++I+YQT    +V NK+H T    TK
Sbjct: 369 PICLSIRRDGKYIIYQTMDISLVHNKKHQTNKKYTK 404


>tr|A9Y8K3|A9Y8K3_9ASPA Putative uncharacterized protein ycf1
           (Fragment) OS=Dichaea lankesteri GN=ycf1 PE=4 SV=1
          Length = 485

 Score = 33.5 bits (75), Expect = 5.4
 Identities = 14/36 (38%), Positives = 22/36 (61%)
 Frame = -2

Query: 385 PLCIDSLKDVEWIVYQTKTRPIVWNKEHLTTLMLTK 278
           P+C+   +D ++I+YQT    +V NK+H T    TK
Sbjct: 369 PICLSIRRDGKYIIYQTMDISLVHNKKHQTNKKYTK 404


>tr|A9Y8K2|A9Y8K2_9ASPA Putative uncharacterized protein ycf1
           (Fragment) OS=Dichaea lankesteri GN=ycf1 PE=4 SV=1
          Length = 471

 Score = 33.5 bits (75), Expect = 5.4
 Identities = 14/36 (38%), Positives = 22/36 (61%)
 Frame = -2

Query: 385 PLCIDSLKDVEWIVYQTKTRPIVWNKEHLTTLMLTK 278
           P+C+   +D ++I+YQT    +V NK+H T    TK
Sbjct: 355 PICLSIRRDGKYIIYQTMDISLVHNKKHQTNKKYTK 390


>tr|B4M3X6|B4M3X6_DROVI GJ10821 OS=Drosophila virilis GN=GJ10821 PE=4
            SV=1
          Length = 1836

 Score = 33.5 bits (75), Expect = 5.4
 Identities = 20/62 (32%), Positives = 28/62 (45%)
 Frame = -1

Query: 377  HR*LEGCRVDSLPNKDSSDSLEQRTPHNFDVDQNRIEELSSCNLGGGEIASQHAHM*SYH 198
            H+ L   R DS P +D S   +QR P  FD +    E   S  L     +++H H+    
Sbjct: 1201 HQQLADWRHDSYPAQDLSGQQQQREPKRFDFNAVASEYAQSGELDTSPSSNRHNHLLDAQ 1260

Query: 197  PT 192
            PT
Sbjct: 1261 PT 1262