BP918588
Clone id YMU001_000115_C05
Library
Length 249
Definition Adiantum capillus-veneris mRNA. clone: YMU001_000115_C05.
Accession
Tissue type prothallium
Developmental stage -
Contig ID -
Sequence
ATTGGCTTCTGTCCTCCTGCAAGACTTCTCTTCCTGAATCCTTTACTTCTACCATACTTA
TTCGGAGTCCTGCTTTTTCTTGAGCTACTTCCCCTACTTCTTTCACCTTGCTGAACAAGG
AGACTCTCTGTATCCAGAACAAAAACACCTTCCGAAACATCCCAAAAGCCTGGCATCCAA
GATCCAAACACACAACCCTCACTTTGGTTTGTTGTGCTTGAGCTGTCTAAGGCATCTTTC
ATACGCTTT
■■Homology search results ■■ -
sp_hit_id P54084
Definition sp|P54084|RNR_THIFE Ribonuclease R (Fragment) OS=Thiobacillus ferrooxidans
Align length 37
Score (bit) 30.0
E-value 3.7
Report
BLASTX 2.2.19 [Nov-02-2008]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.

Query= BP918588|Adiantum capillus-veneris mRNA, clone:
YMU001_000115_C05.
(249 letters)

Database: uniprot_sprot.fasta
412,525 sequences; 148,809,765 total letters

Searching..................................................done



Score E
Sequences producing significant alignments: (bits) Value

sp|P54084|RNR_THIFE Ribonuclease R (Fragment) OS=Thiobacillus fe... 30 3.7
sp|Q9Q8X0|TRDH_RFVKA Transcript release DNA helicase OS=Rabbit f... 30 4.9
sp|Q9CH00|RNR1_LACLA Ribonuclease R 1 OS=Lactococcus lactis subs... 29 6.4
sp|Q5QD51|AKA12_RAT A-kinase anchor protein 12 OS=Rattus norvegi... 29 8.3
sp|Q9WTQ5|AKA12_MOUSE A-kinase anchor protein 12 OS=Mus musculus... 29 8.3

>sp|P54084|RNR_THIFE Ribonuclease R (Fragment) OS=Thiobacillus
ferrooxidans GN=rnr PE=3 SV=2
Length = 439

Score = 30.0 bits (66), Expect = 3.7
Identities = 12/37 (32%), Positives = 24/37 (64%)
Frame = +2

Query: 116 QGDSLYPEQKHLPKHPKSLASKIQTHNPHFGLLCLSC 226
+G+S+Y ++ +P P+ L++ + + NPH LC+ C
Sbjct: 329 RGNSVYFPRRVIPMLPEILSNGLCSLNPHVDRLCMFC 365


>sp|Q9Q8X0|TRDH_RFVKA Transcript release DNA helicase OS=Rabbit
fibroma virus (strain Kasza) GN=s108R PE=3 SV=1
Length = 478

Score = 29.6 bits (65), Expect = 4.9
Identities = 15/35 (42%), Positives = 20/35 (57%), Gaps = 1/35 (2%)
Frame = +2

Query: 125 SLYPEQKHLPKH-PKSLASKIQTHNPHFGLLCLSC 226
+LYP QKH+ S+ K+ TH P + L LSC
Sbjct: 79 NLYPLQKHVVAEVTTSMRQKLSTHRPMYMTLHLSC 113


>sp|Q9CH00|RNR1_LACLA Ribonuclease R 1 OS=Lactococcus lactis subsp.
lactis GN=rnr1 PE=3 SV=1
Length = 817

Score = 29.3 bits (64), Expect = 6.4
Identities = 14/43 (32%), Positives = 24/43 (55%)
Frame = +2

Query: 113 EQGDSLYPEQKHLPKHPKSLASKIQTHNPHFGLLCLSCLRHLS 241
E+G S+Y + +P P+ L++ I + NP L SC+ +S
Sbjct: 317 ERGTSVYVTDRVVPMLPERLSNGICSLNPRINRLTQSCVMEIS 359


>sp|Q5QD51|AKA12_RAT A-kinase anchor protein 12 OS=Rattus norvegicus
GN=Akap12 PE=1 SV=1
Length = 1687

Score = 28.9 bits (63), Expect = 8.3
Identities = 10/20 (50%), Positives = 16/20 (80%)
Frame = +2

Query: 128 LYPEQKHLPKHPKSLASKIQ 187
L PE+K LPKHP+ + S+++
Sbjct: 468 LSPEEKTLPKHPEGIVSEVE 487


>sp|Q9WTQ5|AKA12_MOUSE A-kinase anchor protein 12 OS=Mus musculus
GN=Akap12 PE=1 SV=1
Length = 1684

Score = 28.9 bits (63), Expect = 8.3
Identities = 10/20 (50%), Positives = 16/20 (80%)
Frame = +2

Query: 128 LYPEQKHLPKHPKSLASKIQ 187
L PE+K LPKHP+ + S+++
Sbjct: 466 LSPEEKMLPKHPEGIVSEVE 485


tr_hit_id Q0VMF7
Definition tr|Q0VMF7|Q0VMF7_ALCBS Ribonuclease R OS=Alcanivorax borkumensis (strain SK2 / ATCC 700651 / DSM 11573)
Align length 39
Score (bit) 33.5
E-value 5.5
Report
BLASTX 2.2.19 [Nov-02-2008]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.

Query= BP918588|Adiantum capillus-veneris mRNA, clone:
YMU001_000115_C05.
(249 letters)

Database: uniprot_trembl.fasta
7,341,751 sequences; 2,391,615,440 total letters

Searching..................................................done



Score E
Sequences producing significant alignments: (bits) Value

tr|Q0VMF7|Q0VMF7_ALCBS Ribonuclease R OS=Alcanivorax borkumensis... 33 5.5
tr|B4WXW3|B4WXW3_9GAMM Ribonuclease R OS=Alcanivorax sp. DG881 G... 33 5.5
tr|B2QFL5|B2QFL5_9BACL Ribonuclease R OS=Exiguobacterium sp. AT1... 33 7.2
tr|B0MMH0|B0MMH0_9FIRM Putative uncharacterized protein OS=Eubac... 33 7.2
tr|A8U6H2|A8U6H2_9LACT Ribonuclease R OS=Carnobacterium sp. AT7 ... 33 7.2
tr|A7BS37|A7BS37_9GAMM Putative uncharacterized protein OS=Beggi... 33 7.2
tr|A4GI26|A4GI26_9BACT Exoribonuclease OS=uncultured marine bact... 33 7.2
tr|Q31FJ1|Q31FJ1_THICR RNAse R OS=Thiomicrospira crunogena (stra... 33 9.4

>tr|Q0VMF7|Q0VMF7_ALCBS Ribonuclease R OS=Alcanivorax borkumensis
(strain SK2 / ATCC 700651 / DSM 11573) GN=vacB PE=3 SV=1
Length = 828

Score = 33.5 bits (75), Expect = 5.5
Identities = 14/39 (35%), Positives = 26/39 (66%)
Frame = +2

Query: 110 AEQGDSLYPEQKHLPKHPKSLASKIQTHNPHFGLLCLSC 226
A++G+S+Y + +P P++L++ + + NPH LCL C
Sbjct: 332 AKRGNSVYFPNRVIPMLPEALSNGLCSLNPHVDRLCLYC 370


>tr|B4WXW3|B4WXW3_9GAMM Ribonuclease R OS=Alcanivorax sp. DG881
GN=ADG881_181 PE=4 SV=1
Length = 817

Score = 33.5 bits (75), Expect = 5.5
Identities = 14/39 (35%), Positives = 26/39 (66%)
Frame = +2

Query: 110 AEQGDSLYPEQKHLPKHPKSLASKIQTHNPHFGLLCLSC 226
A++G+S+Y + +P P++L++ + + NPH LCL C
Sbjct: 322 AKRGNSVYFPNRVIPMLPEALSNGLCSLNPHVDRLCLYC 360


>tr|B2QFL5|B2QFL5_9BACL Ribonuclease R OS=Exiguobacterium sp. AT1b
GN=EAT1bDRAFT_2839 PE=4 SV=1
Length = 801

Score = 33.1 bits (74), Expect = 7.2
Identities = 16/43 (37%), Positives = 25/43 (58%)
Frame = +2

Query: 113 EQGDSLYPEQKHLPKHPKSLASKIQTHNPHFGLLCLSCLRHLS 241
E+G S+Y + +P P L++ I + NPH L LSC+ +S
Sbjct: 304 ERGTSVYLVDRVIPMLPHRLSNGICSLNPHVNRLTLSCVMEIS 346


>tr|B0MMH0|B0MMH0_9FIRM Putative uncharacterized protein
OS=Eubacterium siraeum DSM 15702 GN=EUBSIR_00932 PE=3
SV=1
Length = 713

Score = 33.1 bits (74), Expect = 7.2
Identities = 17/43 (39%), Positives = 24/43 (55%)
Frame = +2

Query: 113 EQGDSLYPEQKHLPKHPKSLASKIQTHNPHFGLLCLSCLRHLS 241
E+G S+Y K +P PK L++ I + NP L SCL +S
Sbjct: 299 ERGTSVYIADKVIPMLPKELSNGICSLNPGVDRLAFSCLMEIS 341


>tr|A8U6H2|A8U6H2_9LACT Ribonuclease R OS=Carnobacterium sp. AT7
GN=CAT7_06091 PE=3 SV=1
Length = 783

Score = 33.1 bits (74), Expect = 7.2
Identities = 15/43 (34%), Positives = 26/43 (60%)
Frame = +2

Query: 113 EQGDSLYPEQKHLPKHPKSLASKIQTHNPHFGLLCLSCLRHLS 241
E+G S+Y + +P P+ L++ I + NPH L +SC+ +S
Sbjct: 319 ERGTSVYLTDRVIPMIPQRLSNGICSLNPHVDRLTMSCVMEMS 361


>tr|A7BS37|A7BS37_9GAMM Putative uncharacterized protein
OS=Beggiatoa sp. PS GN=BGP_2282 PE=4 SV=1
Length = 394

Score = 33.1 bits (74), Expect = 7.2
Identities = 14/38 (36%), Positives = 21/38 (55%), Gaps = 1/38 (2%)
Frame = +2

Query: 44 YFYHTYSESCF-FLSYFPYFFHLAEQGDSLYPEQKHLP 154
YF++ Y + FL ++ FF L GD+ PE+ H P
Sbjct: 233 YFWYEYEQVLLGFLDFYRTFFSLVSTGDAKVPEEAHFP 270


>tr|A4GI26|A4GI26_9BACT Exoribonuclease OS=uncultured marine
bacterium EB0_41B09 GN=MBMO_EB0-41B09.0007 PE=3 SV=1
Length = 749

Score = 33.1 bits (74), Expect = 7.2
Identities = 13/38 (34%), Positives = 26/38 (68%)
Frame = +2

Query: 113 EQGDSLYPEQKHLPKHPKSLASKIQTHNPHFGLLCLSC 226
E+G+S+Y ++ +P P++L++ + + NPH LC+ C
Sbjct: 324 ERGNSVYFPRRVIPMLPEALSNGLCSLNPHVDRLCMVC 361


>tr|Q31FJ1|Q31FJ1_THICR RNAse R OS=Thiomicrospira crunogena (strain
XCL-2) GN=Tcr_1490 PE=3 SV=2
Length = 818

Score = 32.7 bits (73), Expect = 9.4
Identities = 14/38 (36%), Positives = 25/38 (65%)
Frame = +2

Query: 113 EQGDSLYPEQKHLPKHPKSLASKIQTHNPHFGLLCLSC 226
E+G+S+Y QK +P P+ L++ + + NP+ LC+ C
Sbjct: 355 ERGNSVYFPQKVVPMLPEKLSNDLCSLNPNVDRLCMVC 392